Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq788 127 2e-24 seq541 125 7e-24 seq203 120 3e-22 seq377 113 4e-20 seq496 105 6e-18 seq322 105 6e-18 seq1309 102 8e-17 seq348 82.4 7e-11 >seq788 Length=1000743 Score = 127 bits (140), Expect = 2e-24 Identities = 156/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||||||||| ||||| || || || || | | | || || || Sbjct 445018 AAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACGGCCA-TCTTCCAG 445076 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| |||||||| ||| || ||||||||||| || |||||||| |||||||| ||| Sbjct 445077 CTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTGGAT 445136 Query 133574 CTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| || |||| | ||||| ||||| ||||||| || || | ||||| ||| |||| Sbjct 445137 -TTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGC 445195 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | ||||| || || || || |||||||| Sbjct 445196 CCGTCAGGGTCTTCACAAAGATCTGCAT 445223 >seq541 Length=1170729 Score = 125 bits (138), Expect = 7e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || |||||||| | ||| | | | || || ||||||||||| Sbjct 610536 GTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGCC 610594 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||||| ||||||||| || |||||||| || || || |||||| ||| Sbjct 610595 TGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGGATCTTGGCCTT 610654 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||| |||||||||| || | ||||| ||| ||||||||||| || Sbjct 610655 CACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGT 610714 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 610715 CTTCACGAAGATCTGCAT 610732 >seq203 Length=1941613 Score = 120 bits (132), Expect = 3e-22 Identities = 155/208 (75%), Gaps = 6/208 (3%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | |||||||||| ||| ||||| || || || || | | || | || || Sbjct 1855978 AAGTGCAGGGTGGACTCT--CTGGATATTATAGTCTGACAGGGTACGGCCAG-CTTCCAG 1856034 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| |||||||| |||| || ||||||||||| || |||||| | |||||||| ||| Sbjct 1856035 CTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGGATGTCCTCCTTGTCTTGGAT 1856094 Query 133574 CTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| || |||| | ||||| ||||| ||||||| || |||| ||||| | | |||| Sbjct 1856095 -TTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGTTCTTGC 1856153 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | ||||| || || ||||| |||||||| Sbjct 1856154 CCGTCAGGGTCTTCACGAAGATCTGCAT 1856181 >seq377 Length=1354867 Score = 113 bits (124), Expect = 4e-20 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || || ||||| | ||| | | | || || |||||||||| Sbjct 824432 GGTCGACTCTTTCTGGATGTTATAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 824490 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || |||||||| || || || |||||| || Sbjct 824491 CTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGGATCTTGGCCT 824550 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||| |||||||||| || | || || ||| |||||||| || | Sbjct 824551 TCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGGGATGGTCTTGCCGGTTAGGG 824610 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 824611 TCTTCACGAAGATCTGCAT 824629 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| ||||||||||| | ||| | | | || || | |||||||| Sbjct 824205 GTTGACTCTTTCTGGATATTGTAATCAGAAAGAGTGCGGCCA-TCTTCCATCTGCTTGCT 824263 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| || |||||||| || || | ||| || ||| Sbjct 824264 GGCAAAGATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATATTGGATATTCGCCTT 824323 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| ||||| |||||||||| || | ||||| ||| |||||||| || || Sbjct 824324 CACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTTAGGGT 824383 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 824384 CTTCACGAAGATCTGCATG 824402 >seq496 Length=1197557 Score = 105 bits (116), Expect = 6e-18 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | |||||||||| |||| |||||||| ||| || | | | || || ||| Sbjct 1032615 AAGTGCAGGGTGGACTCTCTCTGGATATTGTAGTCGGACAGTGCCGCCA--TCTTCCAGC 1032672 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || | ||| | |||| || || || |||| || ||||||| |||||||| ||| Sbjct 1032673 TGTTCACCCACAGAAATCAGATGCAGCAGGTCAGGCAGGATGCCCTCCTTGTCCTGGATG 1032732 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || |||| | |||| ||||| ||||||||||| |||| ||||| ||| ||||| Sbjct 1032733 TTGGCTTTGACATTCTCAGTGGTGTCAGTGGGCTCCACCTCGAGGGTGATGGTCTTGCCC 1032792 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATGGCT 133664 ||||| || || | || ||||||||| || Sbjct 1032793 GTCAGGGTCTTCTCAAAGATCTGCATGCCT 1032822 >seq322 Length=1513654 Score = 105 bits (116), Expect = 6e-18 Identities = 150/207 (72%), Gaps = 3/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||||||||||||||| ||||| || || || || | || || ||| Sbjct 277538 AAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACAGCCATCTTCTAGC 277479 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || |||||||| || | || | ||||||||| || |||||||| |||| ||| ||| Sbjct 277478 TGTTTGCCCGCAAAAGTCAGACACTGCTGGTCAGGCGGGATGCCCTCCTGGTCTTGGAT- 277420 Query 133575 TTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| || |||| | |||| ||||| ||||||| || || | ||||| ||| ||||| Sbjct 277419 TTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCGACCTC-AGGGTGATGGTCTTGCC 277361 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || || || |||||||| Sbjct 277360 TGTGAGGGTCTTCACAAAGATCTGCAT 277334 >seq1309 Length=750738 Score = 102 bits (112), Expect = 8e-17 Identities = 153/212 (72%), Gaps = 13/212 (6%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCC-----CATCGTGGACGAGTCCT 133509 || || | ||||||||||||||| ||||| || ||| | ||||| | |||| Sbjct 105690 AAGTGCAGGGTGGACTCTTTCTGGATATT---ATAGCCTGAGGGAGCGTGGCC--ATCCT 105744 Query 133510 CGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGG 133569 | ||||| | ||| || |||| || | ||||||||| || |||||||| |||||||| Sbjct 105745 C-AGCTGTTGGCCTGCAGAAATCAGACACTGCTGGTCAGGCGGGATGCCCTCCTTGTCTT 105803 Query 133570 TGATCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTT 133628 ||| ||| || |||| | | ||| |||| |||||| || |||| ||||| || Sbjct 105804 GGAT-TTTGGCTTTGACATTTTTAACAATGTCACGGGGCTCGACCTCGAGGGTGATCGTC 105862 Query 133629 TTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| ||||||| || || || |||||||| Sbjct 105863 TTGCCCATCAGAGTCTTCACAAAGATCTGCAT 105894 >seq348 Length=1658837 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925 |||||||| || || | |||||| ||||||||||||||| |||| ||||| || ||| Sbjct 297559 TACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCTGGTTG 297500 Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 ||||| | || || | || ||||| ||||||||||| Sbjct 297499 CTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGG 297462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483319819437640