Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq788 127 2e-24
seq541 125 7e-24
seq203 120 3e-22
seq377 113 4e-20
seq496 105 6e-18
seq322 105 6e-18
seq1309 102 8e-17
seq348 82.4 7e-11
>seq788
Length=1000743
Score = 127 bits (140), Expect = 2e-24
Identities = 156/208 (75%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
|| || | ||||||||||||||| ||||| || || || || | | | || || ||
Sbjct 445018 AAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACGGCCA-TCTTCCAG 445076
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
||| |||||||| ||| || ||||||||||| || |||||||| |||||||| |||
Sbjct 445077 CTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTGGAT 445136
Query 133574 CTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632
||| || |||| | ||||| ||||| ||||||| || || | ||||| ||| ||||
Sbjct 445137 -TTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGC 445195
Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660
| ||||| || || || || ||||||||
Sbjct 445196 CCGTCAGGGTCTTCACAAAGATCTGCAT 445223
>seq541
Length=1170729
Score = 125 bits (138), Expect = 7e-24
Identities = 148/198 (75%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||||||||| || |||||||| | ||| | | | || || |||||||||||
Sbjct 610536 GTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGCC 610594
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| | ||||||| ||||||||| || |||||||| || || || |||||| |||
Sbjct 610595 TGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGGATCTTGGCCTT 610654
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
| | || | ||||| |||||||||| || | ||||| ||| ||||||||||| ||
Sbjct 610655 CACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGT 610714
Query 133643 TTTTACGAAAATCTGCAT 133660
|| ||||| ||||||||
Sbjct 610715 CTTCACGAAGATCTGCAT 610732
>seq203
Length=1941613
Score = 120 bits (132), Expect = 3e-22
Identities = 155/208 (75%), Gaps = 6/208 (3%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
|| || | |||||||||| ||| ||||| || || || || | | || | || ||
Sbjct 1855978 AAGTGCAGGGTGGACTCT--CTGGATATTATAGTCTGACAGGGTACGGCCAG-CTTCCAG 1856034
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
||| |||||||| |||| || ||||||||||| || |||||| | |||||||| |||
Sbjct 1856035 CTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGGATGTCCTCCTTGTCTTGGAT 1856094
Query 133574 CTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632
||| || |||| | ||||| ||||| ||||||| || |||| ||||| | | ||||
Sbjct 1856095 -TTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGTTCTTGC 1856153
Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660
| ||||| || || ||||| ||||||||
Sbjct 1856154 CCGTCAGGGTCTTCACGAAGATCTGCAT 1856181
>seq377
Length=1354867
Score = 113 bits (124), Expect = 4e-20
Identities = 146/199 (73%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||| ||||||||||| || || ||||| | ||| | | | || || ||||||||||
Sbjct 824432 GGTCGACTCTTTCTGGATGTTATAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 824490
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || | ||||||| ||||||||| || |||||||| || || || |||||| ||
Sbjct 824491 CTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGGATCTTGGCCT 824550
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | || | ||||| |||||||||| || | || || ||| |||||||| || |
Sbjct 824551 TCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGGGATGGTCTTGCCGGTTAGGG 824610
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || ||||| ||||||||
Sbjct 824611 TCTTCACGAAGATCTGCAT 824629
Score = 109 bits (120), Expect = 5e-19
Identities = 145/199 (73%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||||||||| ||||||||||| | ||| | | | || || | ||||||||
Sbjct 824205 GTTGACTCTTTCTGGATATTGTAATCAGAAAGAGTGCGGCCA-TCTTCCATCTGCTTGCT 824263
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| | || |||| ||||||||| || |||||||| || || | ||| || |||
Sbjct 824264 GGCAAAGATAAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATATTGGATATTCGCCTT 824323
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
| | |||| ||||| |||||||||| || | ||||| ||| |||||||| || ||
Sbjct 824324 CACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTTAGGGT 824383
Query 133643 TTTTACGAAAATCTGCATG 133661
|| ||||| |||||||||
Sbjct 824384 CTTCACGAAGATCTGCATG 824402
>seq496
Length=1197557
Score = 105 bits (116), Expect = 6e-18
Identities = 150/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514
|| || | |||||||||| |||| |||||||| ||| || | | | || || |||
Sbjct 1032615 AAGTGCAGGGTGGACTCTCTCTGGATATTGTAGTCGGACAGTGCCGCCA--TCTTCCAGC 1032672
Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574
|| | ||| | |||| || || || |||| || ||||||| |||||||| |||
Sbjct 1032673 TGTTCACCCACAGAAATCAGATGCAGCAGGTCAGGCAGGATGCCCTCCTTGTCCTGGATG 1032732
Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634
|| |||| | |||| ||||| ||||||||||| |||| ||||| ||| |||||
Sbjct 1032733 TTGGCTTTGACATTCTCAGTGGTGTCAGTGGGCTCCACCTCGAGGGTGATGGTCTTGCCC 1032792
Query 133635 GTCAGAGTTTTTACGAAAATCTGCATGGCT 133664
||||| || || | || ||||||||| ||
Sbjct 1032793 GTCAGGGTCTTCTCAAAGATCTGCATGCCT 1032822
>seq322
Length=1513654
Score = 105 bits (116), Expect = 6e-18
Identities = 150/207 (72%), Gaps = 3/207 (1%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514
|| || | ||||||||||||||| ||||| || || || || | || || |||
Sbjct 277538 AAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACAGCCATCTTCTAGC 277479
Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574
|| |||||||| || | || | ||||||||| || |||||||| |||| ||| |||
Sbjct 277478 TGTTTGCCCGCAAAAGTCAGACACTGCTGGTCAGGCGGGATGCCCTCCTGGTCTTGGAT- 277420
Query 133575 TTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
||| || |||| | |||| ||||| ||||||| || || | ||||| ||| |||||
Sbjct 277419 TTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCGACCTC-AGGGTGATGGTCTTGCC 277361
Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660
|| || || || || || ||||||||
Sbjct 277360 TGTGAGGGTCTTCACAAAGATCTGCAT 277334
>seq1309
Length=750738
Score = 102 bits (112), Expect = 8e-17
Identities = 153/212 (72%), Gaps = 13/212 (6%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCC-----CATCGTGGACGAGTCCT 133509
|| || | ||||||||||||||| ||||| || ||| | ||||| | ||||
Sbjct 105690 AAGTGCAGGGTGGACTCTTTCTGGATATT---ATAGCCTGAGGGAGCGTGGCC--ATCCT 105744
Query 133510 CGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGG 133569
| ||||| | ||| || |||| || | ||||||||| || |||||||| ||||||||
Sbjct 105745 C-AGCTGTTGGCCTGCAGAAATCAGACACTGCTGGTCAGGCGGGATGCCCTCCTTGTCTT 105803
Query 133570 TGATCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTT 133628
||| ||| || |||| | | ||| |||| |||||| || |||| ||||| ||
Sbjct 105804 GGAT-TTTGGCTTTGACATTTTTAACAATGTCACGGGGCTCGACCTCGAGGGTGATCGTC 105862
Query 133629 TTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
||||| ||||||| || || || ||||||||
Sbjct 105863 TTGCCCATCAGAGTCTTCACAAAGATCTGCAT 105894
>seq348
Length=1658837
Score = 82.4 bits (90), Expect = 7e-11
Identities = 77/98 (79%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925
|||||||| || || | |||||| ||||||||||||||| |||| ||||| || |||
Sbjct 297559 TACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCTGGTTG 297500
Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963
||||| | || || | || ||||| |||||||||||
Sbjct 297499 CTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGG 297462
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483319819437640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |