Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq701 279 6e-70 seq4151 201 1e-46 seq36 138 1e-27 seq1258 95.1 1e-14 >seq701 Length=996996 Score = 279 bits (308), Expect = 6e-70 Identities = 629/934 (67%), Gaps = 21/934 (2%) Strand=Plus/Plus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | |||| ||| || | |||||||| || || | ||| || Sbjct 243089 CCAGGGCTTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAATGTCTG 243148 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 || |||||||| || |||| ||| ||| | | | | ||||| || | ||||| | Sbjct 243149 TGTCAAACTTGTTGGCAAACAAGTGGTGCTTG--CGT-AGCATCCAGTTCAAGTCCCCGG 243205 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 ||||||||||||||| || ||||| || || || | ||| || || || |||| || | Sbjct 243206 CTCCGAACACGCACACAGAACGCACATGGACCCCACGGCAGGGTGGGTAGGGGGCACCCT 243265 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | |||||||| ||| | || ||||| || || ||||| | || || |||||||| | Sbjct 243266 TGGAAACATCCCCTTCGAAATACTGCCATTTGACAAACCTTGCAATTGCATGCATGTCAG 243325 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | |||| ||||| | | | | || | || || ||| | || | ||||| | || Sbjct 243326 ACATGTCATACTTCTGGCTTAAGGACAGTGAGCCTGGGACATCAGGGATCCTCTGAATAG 243385 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| || | || || || || || || || || | ||||||||| |||| || Sbjct 243386 TGGCCCAGAGATACTCATCCGGGCTGTATGTATCTTTAGCCCACTCCATAAACTTTTGGA 243445 Query 162419 CCGTTTTATCGTA---TAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGC 162475 |||| |||| ||| | || ||||| ||| | || | |||||| || | Sbjct 243446 ---TTTTTTCGTTCTCTAGCACATACCCCACGTACATCCTACTGACCACAAAGTAGGCAC 243502 Query 162476 TACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTA 162535 | || ||||||| ||| | | ||||||| || |||||| |||||||| | Sbjct 243503 TGCCTGAAAACAGAGGTGTTTCGAGAGGAGGGTGCATTTTGTCAGTCCCCGTGTTCGTCA 243562 Query 162536 CCATTCCCTCTACGACCAC-GTGTCT--CTTCCTCCACCTGGCCATCTTACTGGTAGACG 162592 | ||||| || || || |||| ||| ||||||| | | ||| ||| | | Sbjct 243563 GC-TTCCCATTA--ACAACTGTGTAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCA 243619 Query 162593 GGTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTA 162652 || || ||||| |||| |||| | | ||| |||| || || || || | Sbjct 243620 TTCTCTCAGTTTCTAGGTTGTTTTCACCCATTAGCGACTTGAGCTTCCGGACAATTTCCA 243679 Query 162653 GATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGC 162712 | ||||| |||| |||||| || | ||||| ||||| || | || ||||| | | | Sbjct 243680 GGTTGGTTTTAATGGGAAAATCCATACCGCAAAGATTTATCAAGTACTTCCAGTCTGCAC 243739 Query 162713 TGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGT 162772 | | | ||| || || || | ||||| || |||||||| || ||||||||||| || | Sbjct 243740 TCATCCTGTAGAGGTCTTGCATGCAGTTGAGGTCGGCCTGAACCCGACTCCACGAGGCAT 243799 Query 162773 ACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCA 162832 |||| || ||||||| | | |||| ||||||||||| ||| || || | || || | Sbjct 243800 ACACCACACTCTCCAGCTGACTGGCCACAAAGACATTACTGAAGCAGGACGCGATGCCAA 243859 Query 162833 TCA---CGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGAT 162889 ||| |||||| || | ||| || | || || || ||||| | |||||| | || Sbjct 243860 TCACCGCGGCCAAAAAGGA-ATC--CTCTGACTTTCTGTCCACGTGAATGCAGTAGAAAT 243916 Query 162890 TCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCA 162949 ||||||| |||||||| ||||| | || || | ||| || || || || || |||| Sbjct 243917 TCTGAGGCATATAGATGGCTCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCA 243976 Query 162950 CGATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 | |||||||| |||||||| ||||| |||| || Sbjct 243977 CTATAGAATATGCTATGGGAAACTCTTCCTCTTC 244010 >seq4151 Length=150835 Score = 201 bits (222), Expect = 1e-46 Identities = 221/294 (75%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| | || |||| | || || || || || || ||||||||||| || | | Sbjct 65706 CAGAGAGGCTGAGGCAGGCTGTTCCTGAGATCTTCCCAGAACCAAAAGTATTGAAGAGGC 65647 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || | |||| ||||| ||||||| |||||||||||| || || | || || || ||| Sbjct 65646 ACTTGTAACACCCTTCATCCTCCAGGGTGGTGTTCCAGAAGGTAATGGTTGAGTTCTTGA 65587 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 || | || || || ||||| | | ||| || || | ||||||||| ||||| || || | Sbjct 65586 GTTCCAGCTGGGTGATGTTTATCTTGTCTTTATAGGCAGGCTGGACCACAACCCCATGGT 65527 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 ||| |||||| ||| |||||||||| ||||| |||||| || |||||||| || || | Sbjct 65526 TCTTGCTGAAGGTGACCATGTTTTCTGGGCTAACAGCCTTGATTTTCTGCCATGTCACAA 65467 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCA 172064 | || ||||| | | |||| |||||||||||||| |||||||||||||||| Sbjct 65466 TCAAGACTTCCTCGGAATTTTGCAGAGAGCATCTTAAGGAAGCAGGTGTGTTCA 65413 Score = 114 bits (126), Expect = 1e-20 Identities = 177/251 (71%), Gaps = 9/251 (4%) Strand=Plus/Minus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 |||||||| ||| | || ||| |||||| ||| | || | ||| | |||||||| Sbjct 68449 ACAGTTTGCGTGACGCTGGTCACATTCCCCAGGTGCAGCACCTGGCAGACCACCTCCT-- 68392 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||| |||| || || ||||| || || |||| ||| || ||||| || ||||| Sbjct 68391 -TCCCCACCTGACGCTTGGGGTCTTTGACCTGGAGAACGCTCGTGACAGACGTGGTCCCA 68333 Query 171623 TTACGATGTA---GAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAA 171679 || | || | |||| | |||||| ||||| || || || || | || ||||| Sbjct 68332 TTGGGGTGAAAGAGAACC---TCAGTACTGTTTTCAATCCCTGACCCAGACACCTTCCAG 68276 Query 171680 AATATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAG 171739 | || ||||| ||||| | ||| | ||||||||||| || |||| ||||||||| Sbjct 68275 GAGATCACAGGGGCTGGGCGGGCATTGGCAGAGCAAGTGATATTTAGGTGGTCTTCGAAG 68216 Query 171740 AACTCATAGTG 171750 || | |||||| Sbjct 68215 AATTTATAGTG 68205 >seq36 Length=3920178 Score = 138 bits (152), Expect = 1e-27 Identities = 448/682 (66%), Gaps = 19/682 (3%) Strand=Plus/Plus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| ||| || | | |||||| || | | || || | | || Sbjct 724858 TCCAGTTAAAGTAACTAAGGTATAACTTATTGTTTTTGTCAACTTCTTTCAGATACTTGG 724917 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || | || || | || || | ||| |||||||| | ||| | || | |||| Sbjct 724918 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 724977 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | || ||||| || || |||| || || || | |||||| | || || | || || Sbjct 724978 TCTCATAATTTTCCCTAGATGGCCCCAGAACAACGGGTACAGAGCCAGCTAGAAAAGCAT 725037 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 |||||| ||||| || || || || |||| | ||||| ||||| | ||||| |||| Sbjct 725038 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAAGAAAGATAAAATT 725097 Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 | || | ||||| ||| || || || | | ||| | ||| ||||| | | | | Sbjct 725098 TGCAAGTAGATATGGTA--GGAATCAAATTTTTATCATTCACATACTCTCCAAATGCTTG 725155 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243 ||| || ||| || || ||| ||| || ||||| ||| || || || || | | Sbjct 725156 CCCATAGGTATGGATTTCAATGCTTTTGCTTAGCTCATTGTAATA-CTTGACCCTTGCAT 725214 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | || |||||| || || || |||||||| |||||||| |||||||| || || Sbjct 725215 GCTCAGGGTTCCAGTTACTTACAACCCAGCACACTAACTT-CTCTTTGCTTGGCAC---- 725269 Query 177303 TTC-GATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCG 177360 ||| | || || | || | | || | ||| | | || || ||||| || ||||| | Sbjct 725270 TTCAAACACGAA-GGGGTTTGTGCTCACCGTCAAGAAGCCGTAAGGCACTTGGATATCTG 725328 Query 177361 AGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATAC--CTTGTTTGAAGGG 177418 |||| || | ||| || | || | ||||| |||| ||| || | || |||| ||| Sbjct 725329 AGTCACGGCGGTAAGTCAGAGTCAAGTTGAACAGGTGTTCGATGCCACTCTTTTG--GGG 725386 Query 177419 GCTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTC 177478 ||| | | || ||||| || |||||||| ||||| || || |||| ||| || | | Sbjct 725387 CGTGTGAGTTGGTGATTCCAAATTCATCCAAATCCATTTCTGGAAGGGTGGCCTAGCCTG 725446 Query 177479 CGTAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGC 177538 | |||| || |||| ||| || |||| |||||| | | || |||| | Sbjct 725447 CTGTGGTAAGTTAGTCAGATCCCAACTGATGTCTCGGTGGTGGATCAGAACTGCATGAGA 725506 Query 177539 TTTGTAATAAACAGATCTGTCT 177560 ||||| || | ||| | |||| Sbjct 725507 TTTGTTGTATAGAGAACGGTCT 725528 >seq1258 Length=759385 Score = 95.1 bits (104), Expect = 1e-14 Identities = 226/336 (67%), Gaps = 8/336 (2%) Strand=Plus/Plus Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702 |||||||| ||||||||| | |||||||| || || || ||| | | ||| || Sbjct 275567 ACCATCTCAGCATTGGTCTTTATAGGAAAGTCCGTCCCACATGTATTCAGTAAGTATCTC 275626 Query 162703 CACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760 ||| || |||| || | | || |||| | |||||| || || ||||| || | Sbjct 275627 CACGGCAC--TGAGCTCTGGAGCAAGTCCTCCATACAGTTTAGGTCAGCCTGCACCCTGG 275684 Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820 ||| || || || || || | ||||| || |||| | |||||||| ||| || | Sbjct 275685 ACCAGGAGGCATAAACCACCCGAACCAACTTACTGGCTATGAAGACATTTGGGAAGCATG 275744 Query 162821 AAACTATCCCCATCACGGCCAGTGAGAACAT--CGGGTCCGCTTTCCTATCTACGTGTAC 162878 | || ||| || | || ||| | ||| | | || | |||| ||| || || || Sbjct 275745 ACACAATCGCCTTGACTGCCTCTTTGAAAGTTTCTGGG--GATTTCTCATCCACATGGAC 275802 Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTT 162938 ||||||| ||||||||||| || | || | ||| | ||| || || |||| ||||| Sbjct 275803 ACAGTATATGTTCTGAGGGGCATACAAAGCTCGCAGCAGTCTTTCAAAGTTCTCGATCTT 275862 Query 162939 ATGGTGTACCACGATAGAATACGCTATGGGGAACTC 162974 | || ||||| ||||| || || || ||||| || Sbjct 275863 CTCATGGACCACCATAGAGTATGCAATAGGGAAGTC 275898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578311172785600