Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq701 279 6e-70
seq4151 201 1e-46
seq36 138 1e-27
seq1258 95.1 1e-14
>seq701
Length=996996
Score = 279 bits (308), Expect = 6e-70
Identities = 629/934 (67%), Gaps = 21/934 (2%)
Strand=Plus/Plus
Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118
|||||| ||||| | |||| ||| || | |||||||| || || | ||| ||
Sbjct 243089 CCAGGGCTTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAATGTCTG 243148
Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178
|| |||||||| || |||| ||| ||| | | | | ||||| || | ||||| |
Sbjct 243149 TGTCAAACTTGTTGGCAAACAAGTGGTGCTTG--CGT-AGCATCCAGTTCAAGTCCCCGG 243205
Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238
||||||||||||||| || ||||| || || || | ||| || || || |||| || |
Sbjct 243206 CTCCGAACACGCACACAGAACGCACATGGACCCCACGGCAGGGTGGGTAGGGGGCACCCT 243265
Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298
| |||||||| ||| | || ||||| || || ||||| | || || |||||||| |
Sbjct 243266 TGGAAACATCCCCTTCGAAATACTGCCATTTGACAAACCTTGCAATTGCATGCATGTCAG 243325
Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358
| |||| ||||| | | | | || | || || ||| | || | ||||| | ||
Sbjct 243326 ACATGTCATACTTCTGGCTTAAGGACAGTGAGCCTGGGACATCAGGGATCCTCTGAATAG 243385
Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418
| ||||| || | || || || || || || || || | ||||||||| |||| ||
Sbjct 243386 TGGCCCAGAGATACTCATCCGGGCTGTATGTATCTTTAGCCCACTCCATAAACTTTTGGA 243445
Query 162419 CCGTTTTATCGTA---TAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGC 162475
|||| |||| ||| | || ||||| ||| | || | |||||| || |
Sbjct 243446 ---TTTTTTCGTTCTCTAGCACATACCCCACGTACATCCTACTGACCACAAAGTAGGCAC 243502
Query 162476 TACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTA 162535
| || ||||||| ||| | | ||||||| || |||||| |||||||| |
Sbjct 243503 TGCCTGAAAACAGAGGTGTTTCGAGAGGAGGGTGCATTTTGTCAGTCCCCGTGTTCGTCA 243562
Query 162536 CCATTCCCTCTACGACCAC-GTGTCT--CTTCCTCCACCTGGCCATCTTACTGGTAGACG 162592
| ||||| || || || |||| ||| ||||||| | | ||| ||| | |
Sbjct 243563 GC-TTCCCATTA--ACAACTGTGTAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCA 243619
Query 162593 GGTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTA 162652
|| || ||||| |||| |||| | | ||| |||| || || || || |
Sbjct 243620 TTCTCTCAGTTTCTAGGTTGTTTTCACCCATTAGCGACTTGAGCTTCCGGACAATTTCCA 243679
Query 162653 GATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGC 162712
| ||||| |||| |||||| || | ||||| ||||| || | || ||||| | | |
Sbjct 243680 GGTTGGTTTTAATGGGAAAATCCATACCGCAAAGATTTATCAAGTACTTCCAGTCTGCAC 243739
Query 162713 TGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGT 162772
| | | ||| || || || | ||||| || |||||||| || ||||||||||| || |
Sbjct 243740 TCATCCTGTAGAGGTCTTGCATGCAGTTGAGGTCGGCCTGAACCCGACTCCACGAGGCAT 243799
Query 162773 ACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCA 162832
|||| || ||||||| | | |||| ||||||||||| ||| || || | || || |
Sbjct 243800 ACACCACACTCTCCAGCTGACTGGCCACAAAGACATTACTGAAGCAGGACGCGATGCCAA 243859
Query 162833 TCA---CGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGAT 162889
||| |||||| || | ||| || | || || || ||||| | |||||| | ||
Sbjct 243860 TCACCGCGGCCAAAAAGGA-ATC--CTCTGACTTTCTGTCCACGTGAATGCAGTAGAAAT 243916
Query 162890 TCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCA 162949
||||||| |||||||| ||||| | || || | ||| || || || || || ||||
Sbjct 243917 TCTGAGGCATATAGATGGCTCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCA 243976
Query 162950 CGATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983
| |||||||| |||||||| ||||| |||| ||
Sbjct 243977 CTATAGAATATGCTATGGGAAACTCTTCCTCTTC 244010
>seq4151
Length=150835
Score = 201 bits (222), Expect = 1e-46
Identities = 221/294 (75%), Gaps = 0/294 (0%)
Strand=Plus/Minus
Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830
|| |||| | || |||| | || || || || || || ||||||||||| || | |
Sbjct 65706 CAGAGAGGCTGAGGCAGGCTGTTCCTGAGATCTTCCCAGAACCAAAAGTATTGAAGAGGC 65647
Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890
|| | |||| ||||| ||||||| |||||||||||| || || | || || || |||
Sbjct 65646 ACTTGTAACACCCTTCATCCTCCAGGGTGGTGTTCCAGAAGGTAATGGTTGAGTTCTTGA 65587
Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950
|| | || || || ||||| | | ||| || || | ||||||||| ||||| || || |
Sbjct 65586 GTTCCAGCTGGGTGATGTTTATCTTGTCTTTATAGGCAGGCTGGACCACAACCCCATGGT 65527
Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010
||| |||||| ||| |||||||||| ||||| |||||| || |||||||| || || |
Sbjct 65526 TCTTGCTGAAGGTGACCATGTTTTCTGGGCTAACAGCCTTGATTTTCTGCCATGTCACAA 65467
Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCA 172064
| || ||||| | | |||| |||||||||||||| ||||||||||||||||
Sbjct 65466 TCAAGACTTCCTCGGAATTTTGCAGAGAGCATCTTAAGGAAGCAGGTGTGTTCA 65413
Score = 114 bits (126), Expect = 1e-20
Identities = 177/251 (71%), Gaps = 9/251 (4%)
Strand=Plus/Minus
Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562
|||||||| ||| | || ||| |||||| ||| | || | ||| | ||||||||
Sbjct 68449 ACAGTTTGCGTGACGCTGGTCACATTCCCCAGGTGCAGCACCTGGCAGACCACCTCCT-- 68392
Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622
| ||||| |||| || || ||||| || || |||| ||| || ||||| || |||||
Sbjct 68391 -TCCCCACCTGACGCTTGGGGTCTTTGACCTGGAGAACGCTCGTGACAGACGTGGTCCCA 68333
Query 171623 TTACGATGTA---GAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAA 171679
|| | || | |||| | |||||| ||||| || || || || | || |||||
Sbjct 68332 TTGGGGTGAAAGAGAACC---TCAGTACTGTTTTCAATCCCTGACCCAGACACCTTCCAG 68276
Query 171680 AATATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAG 171739
| || ||||| ||||| | ||| | ||||||||||| || |||| |||||||||
Sbjct 68275 GAGATCACAGGGGCTGGGCGGGCATTGGCAGAGCAAGTGATATTTAGGTGGTCTTCGAAG 68216
Query 171740 AACTCATAGTG 171750
|| | ||||||
Sbjct 68215 AATTTATAGTG 68205
>seq36
Length=3920178
Score = 138 bits (152), Expect = 1e-27
Identities = 448/682 (66%), Gaps = 19/682 (3%)
Strand=Plus/Plus
Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946
||||||||||||| ||| || | | |||||| || | | || || | | ||
Sbjct 724858 TCCAGTTAAAGTAACTAAGGTATAACTTATTGTTTTTGTCAACTTCTTTCAGATACTTGG 724917
Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006
| || || | || || | || || | ||| |||||||| | ||| | || | ||||
Sbjct 724918 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 724977
Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066
| || ||||| || || |||| || || || | |||||| | || || | || ||
Sbjct 724978 TCTCATAATTTTCCCTAGATGGCCCCAGAACAACGGGTACAGAGCCAGCTAGAAAAGCAT 725037
Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126
|||||| ||||| || || || || |||| | ||||| ||||| | ||||| ||||
Sbjct 725038 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAAGAAAGATAAAATT 725097
Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184
| || | ||||| ||| || || || | | ||| | ||| ||||| | | | |
Sbjct 725098 TGCAAGTAGATATGGTA--GGAATCAAATTTTTATCATTCACATACTCTCCAAATGCTTG 725155
Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243
||| || ||| || || ||| ||| || ||||| ||| || || || || | |
Sbjct 725156 CCCATAGGTATGGATTTCAATGCTTTTGCTTAGCTCATTGTAATA-CTTGACCCTTGCAT 725214
Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302
| || |||||| || || || |||||||| |||||||| |||||||| || ||
Sbjct 725215 GCTCAGGGTTCCAGTTACTTACAACCCAGCACACTAACTT-CTCTTTGCTTGGCAC---- 725269
Query 177303 TTC-GATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCG 177360
||| | || || | || | | || | ||| | | || || ||||| || ||||| |
Sbjct 725270 TTCAAACACGAA-GGGGTTTGTGCTCACCGTCAAGAAGCCGTAAGGCACTTGGATATCTG 725328
Query 177361 AGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATAC--CTTGTTTGAAGGG 177418
|||| || | ||| || | || | ||||| |||| ||| || | || |||| |||
Sbjct 725329 AGTCACGGCGGTAAGTCAGAGTCAAGTTGAACAGGTGTTCGATGCCACTCTTTTG--GGG 725386
Query 177419 GCTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTC 177478
||| | | || ||||| || |||||||| ||||| || || |||| ||| || | |
Sbjct 725387 CGTGTGAGTTGGTGATTCCAAATTCATCCAAATCCATTTCTGGAAGGGTGGCCTAGCCTG 725446
Query 177479 CGTAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGC 177538
| |||| || |||| ||| || |||| |||||| | | || |||| |
Sbjct 725447 CTGTGGTAAGTTAGTCAGATCCCAACTGATGTCTCGGTGGTGGATCAGAACTGCATGAGA 725506
Query 177539 TTTGTAATAAACAGATCTGTCT 177560
||||| || | ||| | ||||
Sbjct 725507 TTTGTTGTATAGAGAACGGTCT 725528
>seq1258
Length=759385
Score = 95.1 bits (104), Expect = 1e-14
Identities = 226/336 (67%), Gaps = 8/336 (2%)
Strand=Plus/Plus
Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702
|||||||| ||||||||| | |||||||| || || || ||| | | ||| ||
Sbjct 275567 ACCATCTCAGCATTGGTCTTTATAGGAAAGTCCGTCCCACATGTATTCAGTAAGTATCTC 275626
Query 162703 CACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760
||| || |||| || | | || |||| | |||||| || || ||||| || |
Sbjct 275627 CACGGCAC--TGAGCTCTGGAGCAAGTCCTCCATACAGTTTAGGTCAGCCTGCACCCTGG 275684
Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820
||| || || || || || | ||||| || |||| | |||||||| ||| || |
Sbjct 275685 ACCAGGAGGCATAAACCACCCGAACCAACTTACTGGCTATGAAGACATTTGGGAAGCATG 275744
Query 162821 AAACTATCCCCATCACGGCCAGTGAGAACAT--CGGGTCCGCTTTCCTATCTACGTGTAC 162878
| || ||| || | || ||| | ||| | | || | |||| ||| || || ||
Sbjct 275745 ACACAATCGCCTTGACTGCCTCTTTGAAAGTTTCTGGG--GATTTCTCATCCACATGGAC 275802
Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTT 162938
||||||| ||||||||||| || | || | ||| | ||| || || |||| |||||
Sbjct 275803 ACAGTATATGTTCTGAGGGGCATACAAAGCTCGCAGCAGTCTTTCAAAGTTCTCGATCTT 275862
Query 162939 ATGGTGTACCACGATAGAATACGCTATGGGGAACTC 162974
| || ||||| ||||| || || || ||||| ||
Sbjct 275863 CTCATGGACCACCATAGAGTATGCAATAGGGAAGTC 275898
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578311172785600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |