Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq975 134 3e-26 seq1818 129 1e-24 seq9145 118 3e-21 seq2520 118 3e-21 seq182 116 9e-21 seq293 105 2e-17 seq541 104 6e-17 seq1 98.7 2e-15 seq377 91.5 3e-13 seq883 87.8 4e-12 >seq975 Length=833997 Score = 134 bits (148), Expect = 3e-26 Identities = 168/230 (73%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 206161 GCTAAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTG 206220 || |||||| ||||| || ||||| || || || || || ||||| | || || Sbjct 558720 GCCAAAATG---CAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTT 558664 Query 206221 GAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTG 206280 ||| || || ||| | ||| |||||| |||||||| || || ||||||||| Sbjct 558663 GAACCGTCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCT 558604 Query 206281 CCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCC 206340 || || || ||||| ||||| || || ||||| ||||||||||| | |||||| | Sbjct 558603 CCTGATCAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTTTGTCT 558544 Query 206341 GATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || |||||| | || || |||||||||||||| ||||| ||||||||||| Sbjct 558543 GACTACAACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCG 558494 Score = 100 bits (110), Expect = 7e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| |||||||||||||| || || | || ||||||| |||||| Sbjct 558494 CGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTG 558553 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAG 204846 | |||||||||||| ||||| || || ||||| || Sbjct 558554 CGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAG 558588 >seq1818 Length=636242 Score = 129 bits (142), Expect = 1e-24 Identities = 167/230 (73%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 206161 GCTAAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTG 206220 || |||||| ||||| || ||||| || || || || || ||||| | || || Sbjct 433233 GCCAAAATG---CAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTT 433177 Query 206221 GAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTG 206280 ||| || || ||| | ||| |||||| |||||||| || || ||||||||| Sbjct 433176 GAACCCTCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCT 433117 Query 206281 CCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCC 206340 || || || ||||| ||||| || || ||| | ||||||||||| | |||||| | Sbjct 433116 CCTGATCAGCAGAGACTGATCTTTGCTGGCAAGTAACTGGAAGATGGACGCACTTTGTCT 433057 Query 206341 GATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || |||||| | || || |||||||||||||| ||||| ||||||||||| Sbjct 433056 GACTACAACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCG 433007 Score = 95.1 bits (104), Expect = 3e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| |||||||||||||| || || | || ||||||| |||||| Sbjct 433007 CGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTG 433066 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAG 204846 | |||||||||||| | ||| || || ||||| || Sbjct 433067 CGTCCATCTTCCAGTTACTTGCCAGCAAAGATCAG 433101 >seq9145 Length=4041 Score = 118 bits (130), Expect = 3e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || |||||| | || || ||| || || ||| | ||| Sbjct 482 AAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACCCTCAGATACAATAGAAAAT 423 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 ||||| |||||||| | || ||||||||| || || || ||||| ||||| Sbjct 422 ATAAAGGCCAAGATTCAGAATAAGGAAGGAATTCCTCCTGATCAGCAGAGACTGATCTTT 363 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | |||||| | || |||||| | || || | ||| Sbjct 362 GCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATTCAAAAGGCGTCC 303 Query 206365 ACTCTTCACCTTGTTTTGAGACTTC 206389 |||||||| ||||| |||||||||| Sbjct 302 ACTCTTCATCTTGTGTTGAGACTTC 278 Score = 89.7 bits (98), Expect = 1e-12 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 204753 GAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCC 204812 |||||||||| ||||| |||||||| ||| | || || | || ||||||| |||||| | Sbjct 278 GAAGTCTCAACACAAGATGAAGAGTGGACGCCTTTTGAATGTTGTAGTCAGACAAAGTAC 337 Query 204813 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAG 204846 |||||||||||| ||||| || || ||||| || Sbjct 338 GTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAG 371 >seq2520 Length=369870 Score = 118 bits (130), Expect = 3e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || |||||| | || || ||| || || ||| | ||| Sbjct 184006 AAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACCCTCAGATACAATAGAAAAT 184065 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 ||||| |||||||| | || ||||||||| || || || ||||| ||||| Sbjct 184066 ATAAAGGCCAAGATTCAGAATAAGGAAGGAATTCCTCCTGATCAGCAGAGACTGATCTTT 184125 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | |||||| | || |||||| | || || | ||| Sbjct 184126 GCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATTCAAAAGGCGTCC 184185 Query 206365 ACTCTTCACCTTGTTTTGAGACTTC 206389 |||||||| ||||| |||||||||| Sbjct 184186 ACTCTTCATCTTGTGTTGAGACTTC 184210 Score = 89.7 bits (98), Expect = 1e-12 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 204753 GAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCC 204812 |||||||||| ||||| |||||||| ||| | || || | || ||||||| |||||| | Sbjct 184210 GAAGTCTCAACACAAGATGAAGAGTGGACGCCTTTTGAATGTTGTAGTCAGACAAAGTAC 184151 Query 204813 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAG 204846 |||||||||||| ||||| || || ||||| || Sbjct 184150 GTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAG 184117 >seq182 Length=1985155 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||||||| || || ||||||||| || || || ||||| ||||| || || ||| Sbjct 1379118 AAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAGCAGAGACTGATCTTTGCTGGCAAG 1379059 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || ||||||||||| | |||||| | || |||||| | || || |||||||||||||| Sbjct 1379058 CAACTGGAAGATGGATGCACTTTGTCTGACTACAACATTCAAAAGGAGTCTACTCTTCAT 1378999 Query 206374 CTTGTTTTGAGACTTCG 206390 ||||| ||||||||||| Sbjct 1378998 CTTGTGTTGAGACTTCG 1378982 Score = 100 bits (110), Expect = 7e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| |||||||||||||| || || | || ||||||| |||||| Sbjct 1378982 CGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTG 1379041 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAG 204846 | |||||||||||| ||||| || || ||||| || Sbjct 1379042 CATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAG 1379076 >seq293 Length=1771812 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || | || || || |||||| | || | ||| || || ||| | ||| Sbjct 533889 AAAACTCTTATGGGGAAGACCATCACTCTCGAGGCTGAACCCTCGGATACAATAGAAAAT 533948 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| |||||||| || || ||||||||| || || || ||| | ||||| Sbjct 533949 GTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAGCAGAGATTGATCTTT 534008 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | ||| || | || |||||| || || ||||| Sbjct 534009 GCTGGCAAGCAACTGGAAGATGGACGCACTCTGTCTGACTACAACACTCAAAAGGAGTCC 534068 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||| || |||||||| Sbjct 534069 ACTCTTCATCTTGTGTTAAGACTTCG 534094 >seq541 Length=1170729 Score = 104 bits (114), Expect = 6e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| |||||| ||||| Sbjct 610717 AAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAAAAC 610658 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| ||||| || || || ||| || || || ||||| Sbjct 610657 GTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAGCAGAGGCTCATCTTT 610598 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| | ||| | | ||||||||| ||||||||||||| Sbjct 610597 GCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCA 610538 Query 206365 ACTCTTCACCTTGTT 206379 ||||| ||||| ||| Sbjct 610537 ACTCTCCACCTGGTT 610523 >seq1 Length=12736304 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 206161 GCTAAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTG 206220 || |||||| ||||| || ||||| || || || || || ||||| | || || Sbjct 12236892 GCCAAAATG---CAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTT 12236836 Query 206221 GAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTG 206280 ||| || || ||| | ||| |||||| |||||||| || || ||||||||| Sbjct 12236835 GAACCCTCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCT 12236776 Query 206281 CCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCC 206340 ||| | || ||||| ||||| || || ||||| ||||||||||| | |||||| | Sbjct 12236775 CCGATCAG-CAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTTTGTCT 12236717 Query 206341 GATTACAACGTCCAGAAAGAGTCTACT 206367 || |||||| | || || ||||||||| Sbjct 12236716 GACTACAACATTCAAAAGGAGTCTACT 12236690 >seq377 Length=1354867 Score = 91.5 bits (100), Expect = 3e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| |||||| | ||| Sbjct 824386 AAGACCCTAACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATTGAAAAT 824327 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || ||| | ||||| || || || ||| || || |||||||| Sbjct 824326 GTGAAGGCGAATATCCAATATAAAGAGGGCATCCCCCCTGACCAGCAGAGGCTTATCTTT 824267 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||| | |||||| |||||||||| | ||| | | |||||||| ||||||||||||| Sbjct 824266 GCCAGCAAGCAGATGGAAGATGGCCGCACTCTTTCTGATTACAATATCCAGAAAGAGTCA 824207 Query 206365 ACTCTTCACCTTGTT 206379 ||||| ||||| ||| Sbjct 824206 ACTCTCCACCTGGTT 824192 Score = 91.5 bits (100), Expect = 3e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||| | |||| ||||| |||||| ||||| Sbjct 824614 AAGACCCTAACCGGCAAGACCATCCCCCTGGAGGTGGAGCCCAGTGACACCATCGAAAAT 824555 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| ||||| || || || ||| || || || ||||| Sbjct 824554 GTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAGCAGAGGCTCATCTTT 824495 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| | ||| | | ||||| ||| ||||||||||||| Sbjct 824494 GCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTATAACATCCAGAAAGAGTCG 824435 Query 206365 ACTCTTCACCTTGTTTTG 206382 || || ||||| ||| || Sbjct 824434 ACCCTGCACCTGGTTCTG 824417 Score = 84.2 bits (92), Expect = 5e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 ||| ||||| ||||| ||||||||||||| ||| || |||| | ||| | |||||||| Sbjct 824192 AACCAGGTGGAGAGTTGACTCTTTCTGGATATTGTAATCAGAAAGAGTGCGGCCATCTTC 824251 Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCC 204848 || |||||| | ||| |||||||||| Sbjct 824252 CATCTGCTTGCTGGCAAAGATAAGCC 824277 >seq883 Length=912398 Score = 87.8 bits (96), Expect = 4e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 206269 GAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGA 206328 ||||||||| || || || ||||| |||||| | || ||||| |||||| |||| Sbjct 120554 GAAGGAATTCCTCCCGATCGGCAGAGACTGATCTTCACTGGCAAGCAACTGGAAGGTGGA 120613 Query 206329 AGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTT 206388 |||||| | || |||||| | || || |||||||||||||| || || ||||||||| Sbjct 120614 CATACTTTGTCTGACTACAACATTCAAAAGGAGTCTACTCTTCATCTCGTGTTGAGACTT 120673 Query 206389 C 206389 | Sbjct 120674 C 120674 Score = 84.2 bits (92), Expect = 5e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 204753 GAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCC 204812 |||||||||| || || |||||||||||||| || || | || ||||||| |||||| Sbjct 120674 GAAGTCTCAACACGAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTAT 120615 Query 204813 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAG 204846 |||| ||||||| ||||| || | |||||| || Sbjct 120614 GTCCACCTTCCAGTTGCTTGCCAGTGAAGATCAG 120581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181567760717831