Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq975 134 3e-26
seq1818 129 1e-24
seq9145 118 3e-21
seq2520 118 3e-21
seq182 116 9e-21
seq293 105 2e-17
seq541 104 6e-17
seq1 98.7 2e-15
seq377 91.5 3e-13
seq883 87.8 4e-12
>seq975
Length=833997
Score = 134 bits (148), Expect = 3e-26
Identities = 168/230 (73%), Gaps = 3/230 (1%)
Strand=Plus/Minus
Query 206161 GCTAAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTG 206220
|| |||||| ||||| || ||||| || || || || || ||||| | || ||
Sbjct 558720 GCCAAAATG---CAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTT 558664
Query 206221 GAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTG 206280
||| || || ||| | ||| |||||| |||||||| || || |||||||||
Sbjct 558663 GAACCGTCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCT 558604
Query 206281 CCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCC 206340
|| || || ||||| ||||| || || ||||| ||||||||||| | |||||| |
Sbjct 558603 CCTGATCAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTTTGTCT 558544
Query 206341 GATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
|| |||||| | || || |||||||||||||| ||||| |||||||||||
Sbjct 558543 GACTACAACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCG 558494
Score = 100 bits (110), Expect = 7e-16
Identities = 79/95 (83%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
||||||||||| ||||| |||||||||||||| || || | || ||||||| ||||||
Sbjct 558494 CGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTG 558553
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAG 204846
| |||||||||||| ||||| || || ||||| ||
Sbjct 558554 CGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAG 558588
>seq1818
Length=636242
Score = 129 bits (142), Expect = 1e-24
Identities = 167/230 (73%), Gaps = 3/230 (1%)
Strand=Plus/Minus
Query 206161 GCTAAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTG 206220
|| |||||| ||||| || ||||| || || || || || ||||| | || ||
Sbjct 433233 GCCAAAATG---CAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTT 433177
Query 206221 GAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTG 206280
||| || || ||| | ||| |||||| |||||||| || || |||||||||
Sbjct 433176 GAACCCTCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCT 433117
Query 206281 CCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCC 206340
|| || || ||||| ||||| || || ||| | ||||||||||| | |||||| |
Sbjct 433116 CCTGATCAGCAGAGACTGATCTTTGCTGGCAAGTAACTGGAAGATGGACGCACTTTGTCT 433057
Query 206341 GATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
|| |||||| | || || |||||||||||||| ||||| |||||||||||
Sbjct 433056 GACTACAACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCG 433007
Score = 95.1 bits (104), Expect = 3e-14
Identities = 78/95 (82%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
||||||||||| ||||| |||||||||||||| || || | || ||||||| ||||||
Sbjct 433007 CGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTG 433066
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAG 204846
| |||||||||||| | ||| || || ||||| ||
Sbjct 433067 CGTCCATCTTCCAGTTACTTGCCAGCAAAGATCAG 433101
>seq9145
Length=4041
Score = 118 bits (130), Expect = 3e-21
Identities = 149/205 (73%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| || || || || || |||||| | || || ||| || || ||| | |||
Sbjct 482 AAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACCCTCAGATACAATAGAAAAT 423
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
||||| |||||||| | || ||||||||| || || || ||||| |||||
Sbjct 422 ATAAAGGCCAAGATTCAGAATAAGGAAGGAATTCCTCCTGATCAGCAGAGACTGATCTTT 363
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| || ||||| ||||||||||| | |||||| | || |||||| | || || | |||
Sbjct 362 GCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATTCAAAAGGCGTCC 303
Query 206365 ACTCTTCACCTTGTTTTGAGACTTC 206389
|||||||| ||||| ||||||||||
Sbjct 302 ACTCTTCATCTTGTGTTGAGACTTC 278
Score = 89.7 bits (98), Expect = 1e-12
Identities = 76/94 (81%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 204753 GAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCC 204812
|||||||||| ||||| |||||||| ||| | || || | || ||||||| |||||| |
Sbjct 278 GAAGTCTCAACACAAGATGAAGAGTGGACGCCTTTTGAATGTTGTAGTCAGACAAAGTAC 337
Query 204813 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAG 204846
|||||||||||| ||||| || || ||||| ||
Sbjct 338 GTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAG 371
>seq2520
Length=369870
Score = 118 bits (130), Expect = 3e-21
Identities = 149/205 (73%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| || || || || || |||||| | || || ||| || || ||| | |||
Sbjct 184006 AAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACCCTCAGATACAATAGAAAAT 184065
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
||||| |||||||| | || ||||||||| || || || ||||| |||||
Sbjct 184066 ATAAAGGCCAAGATTCAGAATAAGGAAGGAATTCCTCCTGATCAGCAGAGACTGATCTTT 184125
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| || ||||| ||||||||||| | |||||| | || |||||| | || || | |||
Sbjct 184126 GCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATTCAAAAGGCGTCC 184185
Query 206365 ACTCTTCACCTTGTTTTGAGACTTC 206389
|||||||| ||||| ||||||||||
Sbjct 184186 ACTCTTCATCTTGTGTTGAGACTTC 184210
Score = 89.7 bits (98), Expect = 1e-12
Identities = 76/94 (81%), Gaps = 0/94 (0%)
Strand=Plus/Minus
Query 204753 GAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCC 204812
|||||||||| ||||| |||||||| ||| | || || | || ||||||| |||||| |
Sbjct 184210 GAAGTCTCAACACAAGATGAAGAGTGGACGCCTTTTGAATGTTGTAGTCAGACAAAGTAC 184151
Query 204813 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAG 204846
|||||||||||| ||||| || || ||||| ||
Sbjct 184150 GTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAG 184117
>seq182
Length=1985155
Score = 116 bits (128), Expect = 9e-21
Identities = 108/137 (79%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
|||||||| || || ||||||||| || || || ||||| ||||| || || |||
Sbjct 1379118 AAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAGCAGAGACTGATCTTTGCTGGCAAG 1379059
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
|| ||||||||||| | |||||| | || |||||| | || || ||||||||||||||
Sbjct 1379058 CAACTGGAAGATGGATGCACTTTGTCTGACTACAACATTCAAAAGGAGTCTACTCTTCAT 1378999
Query 206374 CTTGTTTTGAGACTTCG 206390
||||| |||||||||||
Sbjct 1378998 CTTGTGTTGAGACTTCG 1378982
Score = 100 bits (110), Expect = 7e-16
Identities = 79/95 (83%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
||||||||||| ||||| |||||||||||||| || || | || ||||||| ||||||
Sbjct 1378982 CGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTG 1379041
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAG 204846
| |||||||||||| ||||| || || ||||| ||
Sbjct 1379042 CATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAG 1379076
>seq293
Length=1771812
Score = 105 bits (116), Expect = 2e-17
Identities = 147/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| || | || || || |||||| | || | ||| || || ||| | |||
Sbjct 533889 AAAACTCTTATGGGGAAGACCATCACTCTCGAGGCTGAACCCTCGGATACAATAGAAAAT 533948
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|||||| |||||||| || || ||||||||| || || || ||| | |||||
Sbjct 533949 GTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAGCAGAGATTGATCTTT 534008
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| || ||||| ||||||||||| | ||| || | || |||||| || || |||||
Sbjct 534009 GCTGGCAAGCAACTGGAAGATGGACGCACTCTGTCTGACTACAACACTCAAAAGGAGTCC 534068
Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390
|||||||| ||||| || ||||||||
Sbjct 534069 ACTCTTCATCTTGTGTTAAGACTTCG 534094
>seq541
Length=1170729
Score = 104 bits (114), Expect = 6e-17
Identities = 140/195 (72%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || || || || || || ||||| |||| ||||| |||||| |||||
Sbjct 610717 AAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAAAAC 610658
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||| ||||| ||||| || || || ||| || || || |||||
Sbjct 610657 GTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAGCAGAGGCTCATCTTT 610598
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| || |||||| |||||||||| | ||| | | ||||||||| |||||||||||||
Sbjct 610597 GCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCA 610538
Query 206365 ACTCTTCACCTTGTT 206379
||||| ||||| |||
Sbjct 610537 ACTCTCCACCTGGTT 610523
>seq1
Length=12736304
Score = 98.7 bits (108), Expect = 2e-15
Identities = 147/207 (71%), Gaps = 4/207 (2%)
Strand=Plus/Minus
Query 206161 GCTAAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTG 206220
|| |||||| ||||| || ||||| || || || || || ||||| | || ||
Sbjct 12236892 GCCAAAATG---CAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTT 12236836
Query 206221 GAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTG 206280
||| || || ||| | ||| |||||| |||||||| || || |||||||||
Sbjct 12236835 GAACCCTCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCT 12236776
Query 206281 CCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCC 206340
||| | || ||||| ||||| || || ||||| ||||||||||| | |||||| |
Sbjct 12236775 CCGATCAG-CAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTTTGTCT 12236717
Query 206341 GATTACAACGTCCAGAAAGAGTCTACT 206367
|| |||||| | || || |||||||||
Sbjct 12236716 GACTACAACATTCAAAAGGAGTCTACT 12236690
>seq377
Length=1354867
Score = 91.5 bits (100), Expect = 3e-13
Identities = 137/195 (70%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || || || || || || ||||| |||| ||||| |||||| | |||
Sbjct 824386 AAGACCCTAACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATTGAAAAT 824327
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| || || ||| | ||||| || || || ||| || || ||||||||
Sbjct 824326 GTGAAGGCGAATATCCAATATAAAGAGGGCATCCCCCCTGACCAGCAGAGGCTTATCTTT 824267
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
||| | |||||| |||||||||| | ||| | | |||||||| |||||||||||||
Sbjct 824266 GCCAGCAAGCAGATGGAAGATGGCCGCACTCTTTCTGATTACAATATCCAGAAAGAGTCA 824207
Query 206365 ACTCTTCACCTTGTT 206379
||||| ||||| |||
Sbjct 824206 ACTCTCCACCTGGTT 824192
Score = 91.5 bits (100), Expect = 3e-13
Identities = 139/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || || || || || || ||| | |||| ||||| |||||| |||||
Sbjct 824614 AAGACCCTAACCGGCAAGACCATCCCCCTGGAGGTGGAGCCCAGTGACACCATCGAAAAT 824555
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||| ||||| ||||| || || || ||| || || || |||||
Sbjct 824554 GTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAGCAGAGGCTCATCTTT 824495
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| || |||||| |||||||||| | ||| | | ||||| ||| |||||||||||||
Sbjct 824494 GCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTATAACATCCAGAAAGAGTCG 824435
Query 206365 ACTCTTCACCTTGTTTTG 206382
|| || ||||| ||| ||
Sbjct 824434 ACCCTGCACCTGGTTCTG 824417
Score = 84.2 bits (92), Expect = 5e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822
||| ||||| ||||| ||||||||||||| ||| || |||| | ||| | ||||||||
Sbjct 824192 AACCAGGTGGAGAGTTGACTCTTTCTGGATATTGTAATCAGAAAGAGTGCGGCCATCTTC 824251
Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCC 204848
|| |||||| | ||| ||||||||||
Sbjct 824252 CATCTGCTTGCTGGCAAAGATAAGCC 824277
>seq883
Length=912398
Score = 87.8 bits (96), Expect = 4e-12
Identities = 92/121 (76%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 206269 GAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGA 206328
||||||||| || || || ||||| |||||| | || ||||| |||||| ||||
Sbjct 120554 GAAGGAATTCCTCCCGATCGGCAGAGACTGATCTTCACTGGCAAGCAACTGGAAGGTGGA 120613
Query 206329 AGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTT 206388
|||||| | || |||||| | || || |||||||||||||| || || |||||||||
Sbjct 120614 CATACTTTGTCTGACTACAACATTCAAAAGGAGTCTACTCTTCATCTCGTGTTGAGACTT 120673
Query 206389 C 206389
|
Sbjct 120674 C 120674
Score = 84.2 bits (92), Expect = 5e-11
Identities = 75/94 (80%), Gaps = 0/94 (0%)
Strand=Plus/Minus
Query 204753 GAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCC 204812
|||||||||| || || |||||||||||||| || || | || ||||||| ||||||
Sbjct 120674 GAAGTCTCAACACGAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTAT 120615
Query 204813 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAG 204846
|||| ||||||| ||||| || | |||||| ||
Sbjct 120614 GTCCACCTTCCAGTTGCTTGCCAGTGAAGATCAG 120581
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181567760717831
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |