Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq975 93.3 4e-14
seq348 91.5 1e-13
seq1 86.0 6e-12
seq9145 84.2 2e-11
seq2520 84.2 2e-11
seq1818 84.2 2e-11
>seq975
Length=833997
Score = 93.3 bits (102), Expect = 4e-14
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
||||| ||||||||||||||||| || || || |||||| || || || || | |
Sbjct 558521 GACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAGTTGCTTGCCAGCA 558580
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| || | ||| ||||| ||||| || ||||| ||||| ||| || || |
Sbjct 558581 AAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGAATCTTGGCCTTTACA 558640
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| ||| | ||||| | ||| || || |||| || | || || || || || |||||
Sbjct 558641 TTTTCTATTGTATCCGACGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTC 558700
Query 132110 ATGAAAATCTGCAT 132123
| ||||||||||||
Sbjct 558701 ACGAAAATCTGCAT 558714
>seq348
Length=1658837
Score = 91.5 bits (100), Expect = 1e-13
Identities = 79/98 (81%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 147505 TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTG 147564
|||| || ||||| | |||||||||||||||||| || ||||| || ||||| |||
Sbjct 297559 TACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCTGGTTG 297500
Query 147565 CTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602
|| |||||||| || | |||||| |||||||||||||
Sbjct 297499 CTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGG 297462
>seq1
Length=12736304
Score = 86.0 bits (94), Expect = 6e-12
Identities = 136/194 (70%), Gaps = 1/194 (1%)
Strand=Plus/Plus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
||||| ||||||||||||||||| || || || |||||| || || || || | |
Sbjct 12236694 GACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAGTTGCTTGCCAGCA 12236753
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| || | ||| ||||| ||||| || ||||| ||||| ||| || || |
Sbjct 12236754 AAGATCAGTCTCTGCTGATC-GGAGGAATTCCTTCCTTATCCTGAATCTTGGCCTTTACA 12236812
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| ||| | ||||| | || || || |||| || | || || || || || |||||
Sbjct 12236813 TTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTC 12236872
Query 132110 ATGAAAATCTGCAT 132123
| ||||||||||||
Sbjct 12236873 ACGAAAATCTGCAT 12236886
>seq9145
Length=4041
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
||| | ||||||||||||||||| || ||||| |||||| || || || || | |
Sbjct 304 GACGCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCA 363
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| || | ||| ||||| ||||| || ||||| |||| ||| || || |
Sbjct 364 AAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATTCTGAATCTTGGCCTTTATA 423
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| ||| | ||||| | || || || |||| || | || || || || || |||||
Sbjct 424 TTTTCTATTGTATCTGAGGGTTCAACCTCGAGAGTGATGGTCTTCCCCGTAAGGGTTTTC 483
Query 132110 ATGAAAATCTGCAT 132123
| ||||||||||||
Sbjct 484 ACGAAAATCTGCAT 497
>seq2520
Length=369870
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
||| | ||||||||||||||||| || ||||| |||||| || || || || | |
Sbjct 184184 GACGCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCA 184125
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| || | ||| ||||| ||||| || ||||| |||| ||| || || |
Sbjct 184124 AAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATTCTGAATCTTGGCCTTTATA 184065
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| ||| | ||||| | || || || |||| || | || || || || || |||||
Sbjct 184064 TTTTCTATTGTATCTGAGGGTTCAACCTCGAGAGTGATGGTCTTCCCCGTAAGGGTTTTC 184005
Query 132110 ATGAAAATCTGCAT 132123
| ||||||||||||
Sbjct 184004 ACGAAAATCTGCAT 183991
>seq1818
Length=636242
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
||||| ||||||||||||||||| || || || |||||| || | || || | |
Sbjct 433034 GACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAGTTACTTGCCAGCA 433093
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| || | ||| ||||| ||||| || ||||| ||||| ||| || || |
Sbjct 433094 AAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGAATCTTGGCCTTTACA 433153
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| ||| | ||||| | || || || |||| || | || || || || || |||||
Sbjct 433154 TTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTC 433213
Query 132110 ATGAAAATCTGCAT 132123
| ||||||||||||
Sbjct 433214 ACGAAAATCTGCAT 433227
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476511641877960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |