Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq1165 113 1e-21 seq823 100 9e-18 seq4756 98.7 3e-17 seq4402 98.7 3e-17 seq3991 98.7 3e-17 seq2970 98.7 3e-17 seq2679 98.7 3e-17 seq2141 98.7 3e-17 seq795 87.8 6e-14 >seq1165 Length=738443 Score = 113 bits (124), Expect = 1e-21 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 190243 GCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 190184 Query 2829 CCGGGCTTCAGC 2840 ||||| |||||| Sbjct 190183 CCGGGTTTCAGC 190172 >seq823 Length=893735 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||| ||||||||| ||||| |||||||||||||||||||||||| || Sbjct 697369 GGCCGAAATAGCTCAGCTGGGAGAGCGTTAGAGTGAAGATCTAAAGGTCCCTGGTTCGAC 697428 Query 2828 CCCGGGCTTCAGC 2840 |||||| |||||| Sbjct 697429 CCCGGGTTTCAGC 697441 Score = 96.9 bits (106), Expect = 1e-16 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||| ||||||||| || ||||||||||||||||||||||||||| || Sbjct 697924 GGCCGAAATAGCTCAGCTGGGAGAGCGTTCGACTGAAGATCTAAAGGTCCCTGGTTCGAC 697865 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 697864 CCCGGGTTTCGGC 697852 >seq4756 Length=97781 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 87373 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 87432 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 87433 CCGGGTTTCGGC 87444 >seq4402 Length=159629 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||| ||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 59516 GCCGAAATAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGACC 59457 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 59456 CCGGGTTTCGGC 59445 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 97082 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 97023 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 97022 CCGGGTTTCGGC 97011 >seq3991 Length=164454 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 160893 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 160834 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 160833 CCGGGTTTCGGC 160822 >seq2970 Length=281960 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 53660 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 53601 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 53600 CCGGGTTTCGGC 53589 >seq2679 Length=364677 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 316960 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 316901 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 316900 CCGGGTTTCGGC 316889 >seq2141 Length=463334 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 94674 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 94615 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 94614 CCGGGTTTCGGC 94603 >seq795 Length=1132128 Score = 87.8 bits (96), Expect = 6e-14 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||| ||||||||| |||||||| |||||||||||||||||||||||||||||| | Sbjct 842311 GGCTGAGATAGCTCAGTAGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 842252 Query 2828 CCCGGG 2833 || ||| Sbjct 842251 CCTGGG 842246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15846703064595