Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq4151 266 4e-66 seq54 176 5e-39 seq512 150 2e-31 seq3973 120 4e-22 seq671 95.1 1e-14 seq2484 87.8 2e-12 >seq4151 Length=150835 Score = 266 bits (294), Expect = 4e-66 Identities = 251/320 (78%), Gaps = 0/320 (0%) Strand=Plus/Plus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 || |||||||| |||| | || ||||||||| || || ||| | | |||||| ||| Sbjct 65385 GTCGTGACCCAAAATGAAAAAAAGCCGCTGAACACACCTGCTTCCTTAAGATGCTCTCTG 65444 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || | ||| |||| || ||||||| || ||||||||||||||| | | ||||| Sbjct 65445 CAAAATTCCGAGGAAGTCTTGATTGTGACATGGCAGAAAATCAAGGCTGTTAGCCCAGAA 65504 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| | || || ||||| |||| ||||| ||||||||||| || ||||| |||||| Sbjct 65505 AACATGGTCACCTTCAGCAAGAACCATGGGGTTGTGGTCCAGCCTGCCTATAAAGACAAG 65564 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||||||||||||||||| | |||| | ||||||||||| || || ||||| |||||| | Sbjct 65565 ATAAACATCACCCAGCTGGAACTCAAGAACTCAACCATTACCTTCTGGAACACCACCCTG 65624 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 ||||| || ||||| ||||| |||||||| || || ||||| |||||||| ||||| || Sbjct 65625 GAGGATGAAGGGTGTTACAAGTGCCTCTTCAATACTTTTGGTTCTGGGAAGATCTCAGGA 65684 Query 171372 GTGGCCTGCCTCACCCTCTC 171391 |||||||||| |||||| Sbjct 65685 ACAGCCTGCCTCAGCCTCTC 65704 Score = 219 bits (242), Expect = 5e-52 Identities = 211/271 (78%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 171388 TCTCNGTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCA 171447 || | || |||||||| ||||| || || |||||||| || || |||||||| || |||| Sbjct 68179 TCCCAGTACAGCCCACAGTGTTCCTTCACTATAAATTCTTCGAAGACCACCTAAATATCA 68238 Query 171448 CCTGTTCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAA 171507 | || ||||||||||||||||| | ||| ||| | |||||| | || ||||||| | Sbjct 68239 CTTGCTCTGCCAATGCCCGCCCAGCCCCTGTGATCTCCTGGAAGGTGTCTGGGTCAGGGA 68298 Query 171508 TTGAAAACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTAC 171567 |||||||||||| |||||||| | || | ||||| || || ||||| || || || | Sbjct 68299 TTGAAAACAGTACTGAGGTTCTCTTTCACCCCAATGGGACCACGTCTGTCACGAGCGTTC 68358 Query 171568 TCCAAGTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACC 171627 |||| || |||||||||||| ||||| |||| |||||||| ||||||| ||| ||||| Sbjct 68359 TCCAGGTCAAAGACCCCAAGCGTCAGGTGGGGAAGGAGGTGGTCTGCCAGGTGCTGCACC 68418 Query 171628 TGGGAAATGTAACTAACTTAAGGGAAACTGT 171658 |||| ||||| || | | | | | ||||||| Sbjct 68419 TGGGGAATGTGACCAGCGTCACGCAAACTGT 68449 >seq54 Length=3562170 Score = 176 bits (194), Expect = 5e-39 Identities = 138/165 (84%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | ||||||||||||||| | ||||||||| |||||||| Sbjct 3279515 CTTCAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAA 3279574 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || ||||||||||||||||||||||||||||||||||| || || ||||| |||| Sbjct 3279575 GGGCACACCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGACAGGACAGCTCGCCGTT 3279634 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 ||||||| |||||||| ||| |||||||| || || ||||| Sbjct 3279635 CACCACGTAGAACTGGCAGAGGGCATGGCACGGAGGGAGGGCCAT 3279679 >seq512 Length=1279947 Score = 150 bits (166), Expect = 2e-31 Identities = 132/167 (79%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| |||||||| || || ||| |||||||||||| Sbjct 116015 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAATTCTACCTGGAGGAGGTGA 116074 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| ||| | ||| |||| ||||| || || |||| Sbjct 116075 TGCCCCAGGCTGAGAACCAC------------GACCCAAACATCAAGGAACACGTGAACT 116122 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||||||||| |||||||| || ||||||||||||| ||| Sbjct 116123 CCCTGGGGGAAAAGCTGAAGACCCTCAGGCTGAGGCTGCGGCGTTGT 116169 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| | ||||| |||||||| |||||||||||||| || || || ||||||| Sbjct 118321 AGCTCCAAGAGAGAGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 118380 Query 178522 TAGAAGCTTACATGACAACAAAAATGA 178548 ||||| | |||||||||| || |||| Sbjct 118381 TAGAAACCTACATGACAATGAAGATGA 118407 Score = 84.2 bits (92), Expect = 3e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 178173 CAAATGAAGGACCAGCTGGACAACATGTTGTTAAATGGGTCCCTGCTGGAAGACTTTAAG 178232 |||||||||||| ||||||||||||||||||| | || |||| ||||||| ||||||||| Sbjct 115694 CAAATGAAGGACAAGCTGGACAACATGTTGTTGACTGAGTCCTTGCTGGAGGACTTTAAG 115753 Query 178233 G 178233 | Sbjct 115754 G 115754 >seq3973 Length=164550 Score = 120 bits (132), Expect = 4e-22 Identities = 527/826 (64%), Gaps = 45/826 (5%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| || ||||||||| || |||| || | ||||||| ||||| | | |||||| Sbjct 36179 GTATTCCCTGGTGTTTGTGGTTGGTCTGCTGGGCAATGTGGTGGTGGTGGTGATCCTCAC 36120 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 || |||||||||||| |||| |||||||||||||||||| |||| ||||| || ||| Sbjct 36119 GAAATACAAGAGGCTCTGGATTATGACCAACATCTTCCTGCTCAATTTGGCCATTTCTGA 36060 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 | |||| | | |||||||| || ||||||||| | || | | ||| || Sbjct 36059 CTTGCTCTTTCTATTCACCCTGGTGTTCTGGATTCAC-TATGCT-GAGTCGAA----TGA 36006 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 |||| | || |||||||||| || | || |||| || ||| | || Sbjct 36005 ATGGGTTTTTGGCCCTTCCATGTGTAAGCTTCTCTCTGGGCTTTATTACATGGGCTTATA 35946 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909 ||| || || | || ||||||||| |||| | ||| |||| || || | || | || Sbjct 35945 CAGTGAGATCTTTTTCATCATCCTGCTGACCATAGACCGGTACCTGGCCATCGTCCATGC 35886 Query 8910 GGTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCTG 8969 ||| | | | | ||| || | | || || || | || | || |||| Sbjct 35885 CGTGTTTGCCCTTCGAGCCCGGACTGTCACTTTTGGTGTCATCACGAGTGTTCTCACCTG 35826 Query 8970 GATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTATGAATCCAATAATGCCAC 9029 | ||||| | | | | | || | || || |||||||| |||||||| | || | Sbjct 35825 GGGCCTGGCAGGGCTAGCAGCCCTCCCTGAATTTATCTTCCATGAATCCCAAAA----AG 35770 Query 9030 AGGC----AAGGGGGTCTGCCAAGCCTCCTACAC------------AGACTTTTGGAAGG 9073 |||| || |||||| | | ||| | |||| |||||| Sbjct 35769 AGGCCCAACAGTTTGTCTGCTCACCTATTTACCCAGAAGACCAAGAAGACAGATGGAAGC 35710 Query 9074 GGGTTGATGTTACCAGCATGACCATGGTCACCCTCATCCTGCCTTTGCTTATCATGGCCT 9133 | | ||| | || |||| || | ||||| |||||| |||| ||||||| Sbjct 35709 GTTTCCATGCTCTGAGAATGAATATCCTGGGTCTCATTCTGCCTCTGCTCATCATGGTTG 35650 Query 9134 TCTGCTACTGGAAAATCATCAAGGTCCTCCTCA-AGGCCCACAACAGGTCGAGAAACCTG 9192 ||||||||| ||| || || || || | | |||| ||| || ||| Sbjct 35649 TCTGCTACTCTGGAATTATTAAAACGCTGCTGAGATGCCC----CAGTAAGAAAAAGTAC 35594 Query 9193 CACGCCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCTAC 9252 | ||| || ||||||||| |||| ||||| | | ||| | || |||| |||||| Sbjct 35593 AAGGCCATCCGGCTCATTTTTGTCATCATGGTGGTCTTTTTCATTTTCTGGACACCCTAC 35534 Query 9253 AAC---GTCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTG-GGCCAGACTGTGA 9308 ||| ||||| ||| | || | | ||| | | | |||| | |||| ||||| Sbjct 35533 AACCTGGTCCTCCTCCTCTT---GGCTTTTCAAACGATCTTCTTTGAGACCAG-TTGTGA 35478 Query 9309 AGCGCGGCGCA---GGGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCA 9365 || | ||| | ||||| ||||| | |||| | ||| ||||||||| ||| || Sbjct 35477 ---GCAGAGCAAACAGCTGGACGTGGCCATGCAGGTGACGGAGGTGATCGCCTACACGCA 35421 Query 9366 CTGCTGCGTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTC 9411 |||||||||||||||| ||||||| || || || || || | |||| Sbjct 35420 CTGCTGCGTCAACCCCATCATCTATGCCTTCGTTGGGGAGAGGTTC 35375 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | ||| || | ||||| |||||| |||| |||||||| Sbjct 79045 GTACTCCCTGGTGTTCATCACTGGCCTGGTGGGCAACATCCTGGTCCTCCTGGTCCTCAT 79104 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||||||||||||||| || |||||||| ||||| ||| |||| |||||| || || Sbjct 79105 GCAGTACAAGAGGCTCAAGAGCATGACCAGCATCTACCTCCTCAATCTGGCCATTTCAGA 79164 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 |||||| | | ||||| || ||||| |||||| ||| Sbjct 79165 CCTGCTCTTCCTCTTCACGCTGCCCTTCTGGATTGACT 79202 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||| ||||| | |||| | ||| ||||||| | ||| |||||||||||||||||| Sbjct 79761 TGGACCTGGCCATGCAGGTGACGGAGGTGATCGCTTACACGCACTGCTGCGTCAACCCCA 79820 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 |||||||||| || || || || | ||||| Sbjct 79821 TCATCTACGCCTTCGTCGGGGAGAGGTTCC 79850 >seq671 Length=1144498 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670 ||||| ||||| ||| ||||||| || |||| ||| | ||||||| | ||||| | Sbjct 995326 TACTCCCTGGTCTTTCTGTTTGGTCTCCTTGGAAATTCTGTGGTGATTGTGGTCCTGTTC 995385 Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730 |||||||||||||||| | ||||||| || | | |||| ||||||| ||| | ||| Sbjct 995386 AAGTACAAGAGGCTCAAGTCCATGACCGACGTGTACCTGCTCAACCTTGCCATCTCGGAC 995445 Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGG 8760 ||||| | | || ||||||| || ||| Sbjct 995446 CTGCTCTTCGTGCTCTCCCTCCCTTTCTGG 995475 >seq2484 Length=411614 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/230 (69%), Gaps = 7/230 (3%) Strand=Plus/Plus Query 146915 TTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGT 146974 ||||| | |||| | ||| || ||||| | || || || |||| || | |||| Sbjct 95621 TTTTCGGCAGCTCGATGTGATTCAGGTAAATATGTGCATCTCCCAAAGTAATTATGAAGT 95680 Query 146975 CCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTA----GCTG 147030 | ||||| ||||| || | ||| | || ||||||||||||| | || |||| Sbjct 95681 TAGCTGGCTTCAGGCCTGTGATGTGTGAGACTGTGTAGGTGAGCAGGGCCTACACAGCTG 95740 Query 147031 GCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAG 147090 | || ||||||| || |||||||||||| | | ||||| ||| | | |||||| || Sbjct 95741 G---TGATGAAGGGCACACCCAGGCCCATGGCTCGTGACCTGTGGCAAACCTGGCAGGAC 95797 Query 147091 AGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAG 147140 ||||| || | || | || ||| |||||||| |||| || ||||| Sbjct 95798 AGCTCACCATTCACCGCATAGAACCGGCACAGGGCGTGGTGTGGAGGCAG 95847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583366116650400