Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_026421.1
Length=182380
Score E
Sequences producing significant alignments: (Bits) Value
seq4151 266 4e-66
seq54 176 5e-39
seq512 150 2e-31
seq3973 120 4e-22
seq671 95.1 1e-14
seq2484 87.8 2e-12
>seq4151
Length=150835
Score = 266 bits (294), Expect = 4e-66
Identities = 251/320 (78%), Gaps = 0/320 (0%)
Strand=Plus/Plus
Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131
|| |||||||| |||| | || ||||||||| || || ||| | | |||||| |||
Sbjct 65385 GTCGTGACCCAAAATGAAAAAAAGCCGCTGAACACACCTGCTTCCTTAAGATGCTCTCTG 65444
Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191
|| | ||| |||| || ||||||| || ||||||||||||||| | | |||||
Sbjct 65445 CAAAATTCCGAGGAAGTCTTGATTGTGACATGGCAGAAAATCAAGGCTGTTAGCCCAGAA 65504
Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251
|||||| | || || ||||| |||| ||||| ||||||||||| || ||||| ||||||
Sbjct 65505 AACATGGTCACCTTCAGCAAGAACCATGGGGTTGTGGTCCAGCCTGCCTATAAAGACAAG 65564
Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311
||||||||||||||||| | |||| | ||||||||||| || || ||||| |||||| |
Sbjct 65565 ATAAACATCACCCAGCTGGAACTCAAGAACTCAACCATTACCTTCTGGAACACCACCCTG 65624
Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371
||||| || ||||| ||||| |||||||| || || ||||| |||||||| ||||| ||
Sbjct 65625 GAGGATGAAGGGTGTTACAAGTGCCTCTTCAATACTTTTGGTTCTGGGAAGATCTCAGGA 65684
Query 171372 GTGGCCTGCCTCACCCTCTC 171391
|||||||||| ||||||
Sbjct 65685 ACAGCCTGCCTCAGCCTCTC 65704
Score = 219 bits (242), Expect = 5e-52
Identities = 211/271 (78%), Gaps = 0/271 (0%)
Strand=Plus/Plus
Query 171388 TCTCNGTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCA 171447
|| | || |||||||| ||||| || || |||||||| || || |||||||| || ||||
Sbjct 68179 TCCCAGTACAGCCCACAGTGTTCCTTCACTATAAATTCTTCGAAGACCACCTAAATATCA 68238
Query 171448 CCTGTTCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAA 171507
| || ||||||||||||||||| | ||| ||| | |||||| | || ||||||| |
Sbjct 68239 CTTGCTCTGCCAATGCCCGCCCAGCCCCTGTGATCTCCTGGAAGGTGTCTGGGTCAGGGA 68298
Query 171508 TTGAAAACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTAC 171567
|||||||||||| |||||||| | || | ||||| || || ||||| || || || |
Sbjct 68299 TTGAAAACAGTACTGAGGTTCTCTTTCACCCCAATGGGACCACGTCTGTCACGAGCGTTC 68358
Query 171568 TCCAAGTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACC 171627
|||| || |||||||||||| ||||| |||| |||||||| ||||||| ||| |||||
Sbjct 68359 TCCAGGTCAAAGACCCCAAGCGTCAGGTGGGGAAGGAGGTGGTCTGCCAGGTGCTGCACC 68418
Query 171628 TGGGAAATGTAACTAACTTAAGGGAAACTGT 171658
|||| ||||| || | | | | | |||||||
Sbjct 68419 TGGGGAATGTGACCAGCGTCACGCAAACTGT 68449
>seq54
Length=3562170
Score = 176 bits (194), Expect = 5e-39
Identities = 138/165 (84%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041
||| ||||| || | ||| || | ||||||||||||||| | ||||||||| ||||||||
Sbjct 3279515 CTTCAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAA 3279574
Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101
||| || ||||||||||||||||||||||||||||||||||| || || ||||| ||||
Sbjct 3279575 GGGCACACCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGACAGGACAGCTCGCCGTT 3279634
Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146
||||||| |||||||| ||| |||||||| || || |||||
Sbjct 3279635 CACCACGTAGAACTGGCAGAGGGCATGGCACGGAGGGAGGGCCAT 3279679
>seq512
Length=1279947
Score = 150 bits (166), Expect = 2e-31
Identities = 132/167 (79%), Gaps = 12/167 (7%)
Strand=Plus/Plus
Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290
|||||||| |||||||||| |||||||| |||||||| || || ||| ||||||||||||
Sbjct 116015 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAATTCTACCTGGAGGAGGTGA 116074
Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350
|||| ||||| ||||| ||| | ||| |||| ||||| || || ||||
Sbjct 116075 TGCCCCAGGCTGAGAACCAC------------GACCCAAACATCAAGGAACACGTGAACT 116122
Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397
| |||||||||||||| |||||||| || ||||||||||||| |||
Sbjct 116123 CCCTGGGGGAAAAGCTGAAGACCCTCAGGCTGAGGCTGCGGCGTTGT 116169
Score = 89.7 bits (98), Expect = 6e-13
Identities = 72/87 (83%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521
|||| ||||| | ||||| |||||||| |||||||||||||| || || || |||||||
Sbjct 118321 AGCTCCAAGAGAGAGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 118380
Query 178522 TAGAAGCTTACATGACAACAAAAATGA 178548
||||| | |||||||||| || ||||
Sbjct 118381 TAGAAACCTACATGACAATGAAGATGA 118407
Score = 84.2 bits (92), Expect = 3e-11
Identities = 55/61 (90%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 178173 CAAATGAAGGACCAGCTGGACAACATGTTGTTAAATGGGTCCCTGCTGGAAGACTTTAAG 178232
|||||||||||| ||||||||||||||||||| | || |||| ||||||| |||||||||
Sbjct 115694 CAAATGAAGGACAAGCTGGACAACATGTTGTTGACTGAGTCCTTGCTGGAGGACTTTAAG 115753
Query 178233 G 178233
|
Sbjct 115754 G 115754
>seq3973
Length=164550
Score = 120 bits (132), Expect = 4e-22
Identities = 527/826 (64%), Gaps = 45/826 (5%)
Strand=Plus/Minus
Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669
||| || ||||||||| || |||| || | ||||||| ||||| | | ||||||
Sbjct 36179 GTATTCCCTGGTGTTTGTGGTTGGTCTGCTGGGCAATGTGGTGGTGGTGGTGATCCTCAC 36120
Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729
|| |||||||||||| |||| |||||||||||||||||| |||| ||||| || |||
Sbjct 36119 GAAATACAAGAGGCTCTGGATTATGACCAACATCTTCCTGCTCAATTTGGCCATTTCTGA 36060
Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789
| |||| | | |||||||| || ||||||||| | || | | ||| ||
Sbjct 36059 CTTGCTCTTTCTATTCACCCTGGTGTTCTGGATTCAC-TATGCT-GAGTCGAA----TGA 36006
Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849
|||| | || |||||||||| || | || |||| || ||| | ||
Sbjct 36005 ATGGGTTTTTGGCCCTTCCATGTGTAAGCTTCTCTCTGGGCTTTATTACATGGGCTTATA 35946
Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909
||| || || | || ||||||||| |||| | ||| |||| || || | || | ||
Sbjct 35945 CAGTGAGATCTTTTTCATCATCCTGCTGACCATAGACCGGTACCTGGCCATCGTCCATGC 35886
Query 8910 GGTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCTG 8969
||| | | | | ||| || | | || || || | || | || ||||
Sbjct 35885 CGTGTTTGCCCTTCGAGCCCGGACTGTCACTTTTGGTGTCATCACGAGTGTTCTCACCTG 35826
Query 8970 GATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTATGAATCCAATAATGCCAC 9029
| ||||| | | | | | || | || || |||||||| |||||||| | || |
Sbjct 35825 GGGCCTGGCAGGGCTAGCAGCCCTCCCTGAATTTATCTTCCATGAATCCCAAAA----AG 35770
Query 9030 AGGC----AAGGGGGTCTGCCAAGCCTCCTACAC------------AGACTTTTGGAAGG 9073
|||| || |||||| | | ||| | |||| ||||||
Sbjct 35769 AGGCCCAACAGTTTGTCTGCTCACCTATTTACCCAGAAGACCAAGAAGACAGATGGAAGC 35710
Query 9074 GGGTTGATGTTACCAGCATGACCATGGTCACCCTCATCCTGCCTTTGCTTATCATGGCCT 9133
| | ||| | || |||| || | ||||| |||||| |||| |||||||
Sbjct 35709 GTTTCCATGCTCTGAGAATGAATATCCTGGGTCTCATTCTGCCTCTGCTCATCATGGTTG 35650
Query 9134 TCTGCTACTGGAAAATCATCAAGGTCCTCCTCA-AGGCCCACAACAGGTCGAGAAACCTG 9192
||||||||| ||| || || || || | | |||| ||| || |||
Sbjct 35649 TCTGCTACTCTGGAATTATTAAAACGCTGCTGAGATGCCC----CAGTAAGAAAAAGTAC 35594
Query 9193 CACGCCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCTAC 9252
| ||| || ||||||||| |||| ||||| | | ||| | || |||| ||||||
Sbjct 35593 AAGGCCATCCGGCTCATTTTTGTCATCATGGTGGTCTTTTTCATTTTCTGGACACCCTAC 35534
Query 9253 AAC---GTCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTG-GGCCAGACTGTGA 9308
||| ||||| ||| | || | | ||| | | | |||| | |||| |||||
Sbjct 35533 AACCTGGTCCTCCTCCTCTT---GGCTTTTCAAACGATCTTCTTTGAGACCAG-TTGTGA 35478
Query 9309 AGCGCGGCGCA---GGGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCA 9365
|| | ||| | ||||| ||||| | |||| | ||| ||||||||| ||| ||
Sbjct 35477 ---GCAGAGCAAACAGCTGGACGTGGCCATGCAGGTGACGGAGGTGATCGCCTACACGCA 35421
Query 9366 CTGCTGCGTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTC 9411
|||||||||||||||| ||||||| || || || || || | ||||
Sbjct 35420 CTGCTGCGTCAACCCCATCATCTATGCCTTCGTTGGGGAGAGGTTC 35375
Score = 114 bits (126), Expect = 2e-20
Identities = 120/158 (76%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669
|||||| |||||||| | ||| || | ||||| |||||| |||| ||||||||
Sbjct 79045 GTACTCCCTGGTGTTCATCACTGGCCTGGTGGGCAACATCCTGGTCCTCCTGGTCCTCAT 79104
Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729
||||||||||||||| || |||||||| ||||| ||| |||| |||||| || ||
Sbjct 79105 GCAGTACAAGAGGCTCAAGAGCATGACCAGCATCTACCTCCTCAATCTGGCCATTTCAGA 79164
Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767
|||||| | | ||||| || ||||| |||||| |||
Sbjct 79165 CCTGCTCTTCCTCTTCACGCTGCCCTTCTGGATTGACT 79202
Score = 82.4 bits (90), Expect = 9e-11
Identities = 72/90 (80%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382
||||| ||||| | |||| | ||| ||||||| | ||| ||||||||||||||||||
Sbjct 79761 TGGACCTGGCCATGCAGGTGACGGAGGTGATCGCTTACACGCACTGCTGCGTCAACCCCA 79820
Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412
|||||||||| || || || || | |||||
Sbjct 79821 TCATCTACGCCTTCGTCGGGGAGAGGTTCC 79850
>seq671
Length=1144498
Score = 95.1 bits (104), Expect = 1e-14
Identities = 111/150 (74%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670
||||| ||||| ||| ||||||| || |||| ||| | ||||||| | ||||| |
Sbjct 995326 TACTCCCTGGTCTTTCTGTTTGGTCTCCTTGGAAATTCTGTGGTGATTGTGGTCCTGTTC 995385
Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730
|||||||||||||||| | ||||||| || | | |||| ||||||| ||| | |||
Sbjct 995386 AAGTACAAGAGGCTCAAGTCCATGACCGACGTGTACCTGCTCAACCTTGCCATCTCGGAC 995445
Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGG 8760
||||| | | || ||||||| || |||
Sbjct 995446 CTGCTCTTCGTGCTCTCCCTCCCTTTCTGG 995475
>seq2484
Length=411614
Score = 87.8 bits (96), Expect = 2e-12
Identities = 158/230 (69%), Gaps = 7/230 (3%)
Strand=Plus/Plus
Query 146915 TTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGT 146974
||||| | |||| | ||| || ||||| | || || || |||| || | ||||
Sbjct 95621 TTTTCGGCAGCTCGATGTGATTCAGGTAAATATGTGCATCTCCCAAAGTAATTATGAAGT 95680
Query 146975 CCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTA----GCTG 147030
| ||||| ||||| || | ||| | || ||||||||||||| | || ||||
Sbjct 95681 TAGCTGGCTTCAGGCCTGTGATGTGTGAGACTGTGTAGGTGAGCAGGGCCTACACAGCTG 95740
Query 147031 GCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAG 147090
| || ||||||| || |||||||||||| | | ||||| ||| | | |||||| ||
Sbjct 95741 G---TGATGAAGGGCACACCCAGGCCCATGGCTCGTGACCTGTGGCAAACCTGGCAGGAC 95797
Query 147091 AGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAG 147140
||||| || | || | || ||| |||||||| |||| || |||||
Sbjct 95798 AGCTCACCATTCACCGCATAGAACCGGCACAGGGCGTGGTGTGGAGGCAG 95847
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583366116650400
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