Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq975 129 6e-25 seq1818 120 3e-22 seq9145 111 2e-19 seq2520 111 2e-19 seq1 105 7e-18 seq371 100 3e-16 seq182 89.7 5e-13 seq541 87.8 2e-12 seq203 86.0 6e-12 seq377 84.2 2e-11 seq788 82.4 8e-11 seq304 82.4 8e-11 >seq975 Length=833997 Score = 129 bits (142), Expect = 6e-25 Identities = 164/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| |||||| || || || || || |||||||||||||||||||| | ||| ||| | Sbjct 558497 AGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAA-AGTGCG 558555 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || || || ||||| ||||| |||| | ||||||||| || || || ||||| Sbjct 558556 TCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTC 558615 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || ||||| || || || || | ||| || |||| ||| || ||||| || Sbjct 558616 CTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGACGGTTCAACCTCGAGGGT 558675 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| || || || | ||||| |||||||| ||||||||| Sbjct 558676 GATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 558718 >seq1818 Length=636242 Score = 120 bits (132), Expect = 3e-22 Identities = 162/223 (73%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| |||||| || || || || || |||||||||||||||||||| | ||| ||| | Sbjct 433010 AGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAA-AGTGCG 433068 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || || | ||||| ||||| |||| | ||||||||| || || || ||||| Sbjct 433069 TCCATCTTCCAGTTACTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTC 433128 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || ||||| || || || || | ||| || || | ||| || ||||| || Sbjct 433129 CTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGT 433188 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| || || || | ||||| |||||||| ||||||||| Sbjct 433189 GATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 433231 >seq9145 Length=4041 Score = 111 bits (122), Expect = 2e-19 Identities = 160/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| |||||| || || || ||||| ||||||||||||||||||| | ||| || | Sbjct 280 AGTCTCAACACAAGATGAAGAGTGGACGCCTTTTGAATGTTGTAGTCAGACAA-AGTACG 338 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || || || ||||| ||||| |||| | ||||||||| || || || ||||| Sbjct 339 TCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTC 398 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || | ||||| || || | || | ||| || || | ||| || |||||||| Sbjct 399 CTTATTCTGAATCTTGGCCTTTATATTTTCTATTGTATCTGAGGGTTCAACCTCGAGAGT 458 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| || || || | ||||| |||||||| ||||| ||| Sbjct 459 GATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTTG 501 >seq2520 Length=369870 Score = 111 bits (122), Expect = 2e-19 Identities = 160/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| |||||| || || || ||||| ||||||||||||||||||| | ||| || | Sbjct 184208 AGTCTCAACACAAGATGAAGAGTGGACGCCTTTTGAATGTTGTAGTCAGACAA-AGTACG 184150 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || || || ||||| ||||| |||| | ||||||||| || || || ||||| Sbjct 184149 TCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTC 184090 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || | ||||| || || | || | ||| || || | ||| || |||||||| Sbjct 184089 CTTATTCTGAATCTTGGCCTTTATATTTTCTATTGTATCTGAGGGTTCAACCTCGAGAGT 184030 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| || || || | ||||| |||||||| ||||| ||| Sbjct 184029 GATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTTG 183987 >seq1 Length=12736304 Score = 105 bits (116), Expect = 7e-18 Identities = 147/202 (73%), Gaps = 3/202 (1%) Strand=Plus/Plus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCC 134575 || || |||||||||||||||||||| | ||| ||| | || || || || ||||| Sbjct 12236691 GTAGACTCCTTTTGAATGTTGTAGTCAGACAA-AGTGCGTCCATCTTCCAGTTGCTTGCC 12236749 Query 134576 TGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTT 134635 ||||| |||| | ||||||||| || || || ||||| || || ||||| || || Sbjct 12236750 AGCAAAGATCAGTCTCTGCTGATC-GGAGGAATTCCTTCCTTATCCTGAATCTTGGCCTT 12236808 Query 134636 GACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGT 134695 || || | ||| || || | ||| || ||||| || ||||| || || || | || Sbjct 12236809 TACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGT 12236868 Query 134696 TTTAACGAAAATTTGCATTTTG 134717 ||| |||||||| ||||||||| Sbjct 12236869 TTTCACGAAAATCTGCATTTTG 12236890 >seq371 Length=1453275 Score = 100 bits (110), Expect = 3e-16 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 |||| |||||| || || || ||||| |||||||||||| ||||||| | | || || Sbjct 449785 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGCTGTAGTCACACAAAGTTTGT 449726 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || || || ||||| | || ||| | ||||||||| || || || ||||| Sbjct 449725 CTGTCTTCCAGTTGCTTGCCAGTGAATATC--AGTCTGCTGATCAGGAGGAATTCCTTCC 449668 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | ||| | || ||||| || |||||||| Sbjct 449667 TTATCCTGGATCTTGGCCTTTACATTTTCTACTGTACCTGAGGATTCAACCTCGAGAGTG 449608 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| || || | | ||||| || ||||| ||||| ||| Sbjct 449607 ATGGTCTTCCCCATAAGGGTTTTCACAAAAATCTGCATCTTG 449566 >seq182 Length=1985155 Score = 89.7 bits (98), Expect = 5e-13 Identities = 155/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| |||||| || || || || || |||||||||||||||||||| | ||| ||| Sbjct 1378985 AGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAA-AGTGCA 1379043 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || || || ||||| ||||| |||| | ||||||||| || || || ||||| Sbjct 1379044 TCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTC 1379103 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || ||||| || | || || | ||| | || | ||| | || || | Sbjct 1379104 CTTATCCTGAATCTTGGCCTGTACATTTTCTATTGTACCCGAGGGTTCAGCCTCAAGGAT 1379163 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| || || || | ||||| | |||||| ||||| ||| Sbjct 1379164 GATGGTCTTCCCCGTAAGGGTTTTCAGGAAAATCTGCATCTTG 1379206 >seq541 Length=1170729 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || || || || || || |||||||| || || ||| | || || Sbjct 610524 ACCAGGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 610583 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||||||||| || | | |||||| || || || ||||| ||||| ||||| Sbjct 610584 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGG 610643 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || || || | ||||| | ||||| || || || ||||| || Sbjct 610644 ATCTTGGCCTTCACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 610703 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| | || || ||||| || ||||||||| Sbjct 610704 CCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 610736 >seq203 Length=1941613 Score = 86.0 bits (94), Expect = 6e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 134562 TCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCT 134621 || ||||||||||| |||||||||| ||||||||| || ||||| ||| | || || ||| Sbjct 1856030 TCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGGATGTCCTCCTTGTCT 1856089 Query 134622 TGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTT 134681 || ||||| |||||| || | ||||| | || || ||||| || ||| | Sbjct 1856090 TGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGTTC 1856149 Query 134682 TTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || | || || ||||| || ||||| Sbjct 1856150 TTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1856181 >seq377 Length=1354867 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || ||| || ||||| || || || || || || ||||| || || | Sbjct 824403 CCACCCCTCAGGTGCAGAACCAGGTGCAGGGTCGACTCTTTCTGGATGTTATAATCAGAA 824462 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| ||||||||||| || | | |||||| || || || Sbjct 824463 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 824522 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| ||||| ||||| || || || || || | ||||| | ||||| Sbjct 824523 ATGCCCTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 824582 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || | ||||| || ||||||| || || ||||| || ||||||||| Sbjct 824583 TCCAGGGGGATGGTCTTGCCGGTTAGGGTCTTCACGAAGATCTGCATTTTG 824633 >seq788 Length=1000743 Score = 82.4 bits (90), Expect = 8e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| || ||||| || || || || || ||||| | || | Sbjct 445006 AGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACGG 445065 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||||||||| ||||||| || ||||||||| || ||||| ||||| || Sbjct 445066 CCATCTTCCAGCTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGGGATGCCCTCC 445125 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| ||||| |||||| || | ||||| | || || || || || Sbjct 445126 TTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTG 445185 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || | || || || || || ||||| Sbjct 445186 ATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 445223 >seq304 Length=1579526 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/226 (69%), Gaps = 8/226 (4%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAG-TCGCCAACGGTGTG 134554 |||| |||||| || || || ||||| |||||||||||||||||| | | ||| | Sbjct 417591 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGATGGACAAAG----T 417646 Query 134555 AGAGTCGT---CGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCC 134611 | | || | | || || ||||| ||||| |||| | ||||||||| | || || | Sbjct 417647 ACATTCATCTCCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCACGAGGAATTTC 417706 Query 134612 TTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAG 134671 ||| || || ||||| || || || || ||| | || | ||| || || || Sbjct 417707 TTCCTTATCCTGAATCTTGACCTTTACATTTTCTGTTGTAGCCGAGGGTTCAACCTCAAG 417766 Query 134672 AGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||| || || | ||| | ||||| |||||||| ||||||||| Sbjct 417767 AGTGATAGTCTACTTGGTAAGGGTTTTCACGAAAATCTGCATTTTG 417812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505292828591720