Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq19 307 1e-78 seq3332 230 3e-55 seq878 123 3e-23 seq348 123 3e-23 seq674 116 5e-21 >seq19 Length=4596781 Score = 307 bits (340), Expect = 1e-78 Identities = 635/937 (68%), Gaps = 16/937 (2%) Strand=Plus/Plus Query 39267 TTCT-TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCT-TGTGACATAACTCCCAT 39324 |||| ||| |||||| |||| || | |||| ||| | || | |||||| |||||||| Sbjct 3964756 TTCTCTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTGTTGGATTTGACATCACTCCCAT 3964815 Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384 | || || ||||| || | || || || || || ||||||| ||| ||||| Sbjct 3964816 CCTCTGATACTCACCTACTCTCTTTTCAAAGAAGTTCC-----CCTTCCAGTGAAATATT 3964870 Query 39385 TTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAAT 39444 |||||||| ||||| ||||| | | | | || ||| |||| || || Sbjct 3964871 CTCCATGAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCCAAAACCTAGCTCCAGCAT 3964930 Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504 | || ||||| || || || || || ||||| | |||||||| | ||||| Sbjct 3964931 AAGTCGGTCTGCCACGAACTCAATATACTGCTTCATTAACGTGCAATTCATCCTAATGAG 3964990 Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564 || || || | | |||||| || ||| | | || || ||||| | | ||||| Sbjct 3964991 CTTCACAGGCAAGGTCTCCGTGAGGAACCCCTGCTCTATCCGAACGGCATTAATAATTAT 3965050 Query 39565 CGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAA 39624 | ||| || | ||| || | | ||||| ||||| | |||||| || Sbjct 3965051 TTCCTTCACTCTCTGCTTGGAAGGTTTGTGGACCAGTTGTTTGAACATCAGGCAGGCAAA 3965110 Query 39625 GTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCAT 39684 |||||| |||| ||||||||||| ||||| | ||| || ||||| || || |||||||| Sbjct 3965111 GTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTCAG-CCAGGCAT 3965169 Query 39685 TAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTC 39744 || | || || |||||||| ||||| | |||||||| |||||||||||||| ||||| Sbjct 3965170 CAGGTCGCGTTTCTTGAGCCAGAATATCGTCGCAAAAGAACCAGAAAAGAAGATTCCTTC 3965229 Query 39745 TACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTA---TCCACTT 39801 || || ||||| | |||| | || ||||| | | || || | |||| | Sbjct 3965230 CACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCCTCTTTGTCGCCAGTCCAATG 3965289 Query 39802 CTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA 39861 | ||||| || || ||||||||||||||||||||| | | || || |||||| | Sbjct 3965290 CAAGGCCCAGTCTGC---CTTCTTTACACAAGGCATTGTCTGGAGGGCGTTGAAGAGAAA 3965346 Query 39862 ATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATG 39921 | |||| || ||||||||| || | || || | ||||| ||||| || ||||| Sbjct 3965347 TTCCCTTTCTTCGGAATCTTTAACGTAACTGTCAATGAGGAGACTGTACATCTCAGAATG 3965406 Query 39922 GATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTC 39981 ||||||||| || || || || || || || ||||| | ||||| ||||| || || || Sbjct 3965407 GATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 3965466 Query 39982 TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGC 40041 | | ||| | ||| |||| |||||||| ||||| |||||||| | |||| || || Sbjct 3965467 TTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTCGGCACAAAGAAAGC 3965526 Query 40042 CAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCC-AGTCATTGATAT 40100 || || || | ||| ||| | || || || || | ||||| || | || | Sbjct 3965527 CAGAACGTGGGATAGAAAGTATCTCTCCTCAGGCTTC-AGGGATTCCTGGTGCTGAATGT 3965585 Query 40101 CTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGT 40160 | || || | ||| || ||||||||||||||||| || ||||| || || | ||||| | Sbjct 3965586 CCTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTCATACATCT 3965645 Query 40161 TCCATATATCACGATATTGTATTGGAAAAATAACAAA 40197 ||| |||||| | || | | || || || ||||| Sbjct 3965646 GCCAAATATCAAGGTACTCGACAGGGAAGATGACAAA 3965682 >seq3332 Length=249688 Score = 230 bits (254), Expect = 3e-55 Identities = 623/943 (66%), Gaps = 19/943 (2%) Strand=Plus/Minus Query 39271 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTG----TGACATAACTCCCATTT 39326 ||| |||||| ||| | | |||| ||| | || ||| |||||| ||||| || Sbjct 149026 TTATAAGTCAGTATCCACGGTAAAAGAATTCT-TTGTTGGACTTGACATCACTCCTATCC 148968 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 | || || | || | | ||||| || || ||||| || ||||||| ||| ||||| | Sbjct 148967 TCTGATACTTGCCTCCTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCT 148908 Query 39387 CCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCA 39446 |||| | ||||| ||||| | | | | || |||| |||| || | | | Sbjct 148907 CCATAAGGTCAAATGGATTTTCTACTCTGGAAACCTTGCTAAAACCTAGTTTCTACCTAA 148848 Query 39447 ATCTATCTGCAACAAATTCTATGTA-TGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 || ||||| | ||||| || || || ||| | | | || ||||| || ||||| Sbjct 148847 GTCAGTCTGCCATGAATTCAATATACTGCTTTATTAACATG-CAGTTCATCCCAATGAGC 148789 Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTA-TTAT 39564 || || || | |||| | || ||||| | || || || || | || || |||| Sbjct 148788 TTCACGGGCAAGGCCTGTGGGAGGAACTCCTGGTCTATCCTAACAGCAT-TGATAGTTAT 148730 Query 39565 CGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAA 39624 | ||| || || ||| ||| | | ||||| ||||| | |||||| || Sbjct 148729 TTCCTTCACTCTCTGCTCTGAAGGTTTATGGACCAGGTGTTTGAACATCAGGCAGGCAAA 148670 Query 39625 GTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAAT-GTGAGTCCAGGCA 39683 || | |||| ||||||||||| ||||| | || || ||||| ||||| ||||||| Sbjct 148669 GTTATGGTGTAAACCCTCATCTCTGCTAATAAGCTCATTGGAAAACCGTGAGGCCAGGCA 148610 Query 39684 TTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTT 39743 | || | | || |||||||| ||||| | ||| |||| ||| ||||| |||| |||| Sbjct 148609 TCAGGCTGCATTTCTTGAGCCAGAATATCGACGCAGAAGAACCAAAAAAGGAGATTCCTT 148550 Query 39744 CTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT---ATCCACT 39800 | || ||||| | ||| | || ||||| | | || || | | ||| Sbjct 148549 CCGTGGCAGCAAAGTCCACATCCCATTCCCCGTAGGTAGCCTCTTTGTCCCCAACCCAAC 148490 Query 39801 TCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAT 39860 | |||||||| || |||||| || ||||||||||||| || || | || |||||| Sbjct 148489 ACAAGGCCCAATCTGCCTTCTTCCTTCCACAAGGCATTGTCTCGATGGTGTTGAAGAGAA 148430 Query 39861 AATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAAT 39920 | | | | || | |||||||| ||| || || | | |||||| |||| || |||| Sbjct 148429 ATTCTGTCTCTTTGGAATCTTTAATATAAGTGTCAGTGAGGAGACTACACATCTCAGAAT 148370 Query 39921 GGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCT 39980 |||||||||| || || || || || || || ||||| | ||||| || || || || | Sbjct 148369 GGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGGCTTCTGTCATCTGAACTT 148310 Query 39981 CTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATG 40040 || | | | | ||| |||| |||||||| ||| | ||| |||| | ||||| || | Sbjct 148309 CTTGGCCACACCACTCCACCAAGTTTTCATTTACTGTGCCAACACTCACCGCAAAGAAAG 148250 Query 40041 CC--AAT----ACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCAT 40094 || ||| || || ||||||| | | || || || ||| | ||||| | Sbjct 148249 CCAGAATGTGAACGTGGGGTATAAAATCTCTCTCCTCAGGCTTCAGCGATTCCCAGTGTT 148190 Query 40095 TGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGT 40154 || || || || | || || ||||||||||||||||| || ||||| || || || Sbjct 148189 GAATGTCCTTGGAAAGATTCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTAC 148130 Query 40155 ACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAA 40197 |||| | ||| | ||| | || | || || || || ||||| Sbjct 148129 ACATCTGCCAAAGGTCATGGTACTTCATAGGGAAGATGACAAA 148087 >seq878 Length=898115 Score = 123 bits (136), Expect = 3e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || ||||| ||||| |||||||| || || || || | Sbjct 679154 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 679095 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| |||||||||||||| ||||| || || ||||| | Sbjct 679094 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 679035 Query 39759 CAACAA 39764 | |||| Sbjct 679034 CCACAA 679029 >seq348 Length=1658837 Score = 123 bits (136), Expect = 3e-23 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || ||||| ||||| || || || |||||||| ||||| | || Sbjct 305685 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATGGAC 305626 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||||||||||||||| ||||||||||| ||||| ||||| || || | | |||||| Sbjct 305625 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 305566 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 305565 TTTCTTATACCAT 305553 Score = 123 bits (136), Expect = 3e-23 Identities = 130/171 (76%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| ||||||||||||||||| || |||||| ||| | || || || || || || | Sbjct 308371 TCCAGCCGTAGAAATGCATACTGGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 308312 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 ||| ||||| |||||||| |||||||| ||||| || || ||||| || | || | | Sbjct 308311 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTTTCAGCTGCCATCTTAAGAACGGTTT 308252 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 | || | ||||||||||| ||||||| ||| || || | ||||| |||| Sbjct 308251 TCTGTGAAATTTCCCAAACAGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 308201 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 70331 CATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTA 70390 || |||| || | ||| |||||||| ||||| || || || | ||| || || ||||| | Sbjct 282580 CACCACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACGGCAATCCTTGCTGCCA 282521 Query 70391 GAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTAT 70450 | || |||||||||||||| | || || | || || ||| | || ||||| || |||| Sbjct 282520 GGATGGCATAGTCAGGATGCTTAGTTGTCAAGGTCGCAGCTGTCTCAGCAGCCAAAGTAT 282461 Query 70451 CTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| ||| | ||| || || || | |||| ||||| || |||||||||| Sbjct 282460 CTAGTTCCACAGTGGTGACCCCACTGTATAAGCCTTGGATTACTTTCATGG 282410 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 ||||||||||| || ||||| ||||||||||| || | || || || |||| | | | Sbjct 296253 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGT 296194 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 ||||| |||||||| || || || | ||| |||||||| | ||| || ||||||| || Sbjct 296193 TCTTCCTTTCCTGTGTTCTTCTTTAAATCCAGAAACTCAAAAATGTCTAAATGCCAAGGC 296134 Query 69715 TCTAGATATATCGC 69728 || || || || || Sbjct 296133 TCCAGGTAAATAGC 296120 Score = 87.8 bits (96), Expect = 2e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || ||||| || | || ||||| || || || ||||| || |||||||| || ||| Sbjct 288017 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 287958 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGA-TGAATTCCTATCGCGACACGCATCAA 70109 |||||||||||||| | || ||||| ||| ||||| || | | || | |||||| Sbjct 287957 TATGTTTCAATAGCAGCATCAATATCTT-CTGCGTGAATCCCCACAGACACCCTCATCAA 287899 Query 70110 CATATGCTGAGGTCGTTCTACC 70131 |||||| || |||| |||| || Sbjct 287898 CATATGTTGTGGTCTTTCTGCC 287877 Score = 86.0 bits (94), Expect = 9e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 69507 ATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACA 69566 ||||||| || ||||| ||||||||||| ||||||| |||||||||||||||||||| Sbjct 296708 ATATAGCTTCTCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACATTCATTTGGACA 296649 Query 69567 CATCAATGACCA 69578 || ||| ||||| Sbjct 296648 CAACAAGGACCA 296637 >seq674 Length=1058379 Score = 116 bits (128), Expect = 5e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | ||| || ||||| |||||||| ||||| ||||| | || || Sbjct 558248 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCGGGCATGAGACCTCTTTTCTTT 558189 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||| |||||||||||||| || ||||| || |||||||| || ||||| || Sbjct 558188 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAGCC 558129 Query 39761 ACAAGTCTCTCTCC 39774 || | ||| || || Sbjct 558128 ACCACTCTTTCCCC 558115 Score = 89.7 bits (98), Expect = 7e-13 Identities = 94/123 (76%), Gaps = 3/123 (2%) Strand=Plus/Minus Query 39987 AAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046 |||||||| || |||||||||||||| ||||||||||| || |||||||| || |||| Sbjct 552693 AAAATCTTACC---AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAATA 552637 Query 40047 CATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTG 40106 || |||||||| || ||||| | | | | || ||||||| | || ||| |||| Sbjct 552636 TGTGAGAGATAAAATACTTCTCATCCGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 552577 Query 40107 ATA 40109 ||| Sbjct 552576 ATA 552574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686765313338040