Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq19 307 1e-78
seq3332 230 3e-55
seq878 123 3e-23
seq348 123 3e-23
seq674 116 5e-21
>seq19
Length=4596781
Score = 307 bits (340), Expect = 1e-78
Identities = 635/937 (68%), Gaps = 16/937 (2%)
Strand=Plus/Plus
Query 39267 TTCT-TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCT-TGTGACATAACTCCCAT 39324
|||| ||| |||||| |||| || | |||| ||| | || | |||||| ||||||||
Sbjct 3964756 TTCTCTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTGTTGGATTTGACATCACTCCCAT 3964815
Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384
| || || ||||| || | || || || || || ||||||| ||| |||||
Sbjct 3964816 CCTCTGATACTCACCTACTCTCTTTTCAAAGAAGTTCC-----CCTTCCAGTGAAATATT 3964870
Query 39385 TTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAAT 39444
|||||||| ||||| ||||| | | | | || ||| |||| || ||
Sbjct 3964871 CTCCATGAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCCAAAACCTAGCTCCAGCAT 3964930
Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504
| || ||||| || || || || || ||||| | |||||||| | |||||
Sbjct 3964931 AAGTCGGTCTGCCACGAACTCAATATACTGCTTCATTAACGTGCAATTCATCCTAATGAG 3964990
Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564
|| || || | | |||||| || ||| | | || || ||||| | | |||||
Sbjct 3964991 CTTCACAGGCAAGGTCTCCGTGAGGAACCCCTGCTCTATCCGAACGGCATTAATAATTAT 3965050
Query 39565 CGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAA 39624
| ||| || | ||| || | | ||||| ||||| | |||||| ||
Sbjct 3965051 TTCCTTCACTCTCTGCTTGGAAGGTTTGTGGACCAGTTGTTTGAACATCAGGCAGGCAAA 3965110
Query 39625 GTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCAT 39684
|||||| |||| ||||||||||| ||||| | ||| || ||||| || || ||||||||
Sbjct 3965111 GTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTCAG-CCAGGCAT 3965169
Query 39685 TAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTC 39744
|| | || || |||||||| ||||| | |||||||| |||||||||||||| |||||
Sbjct 3965170 CAGGTCGCGTTTCTTGAGCCAGAATATCGTCGCAAAAGAACCAGAAAAGAAGATTCCTTC 3965229
Query 39745 TACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTA---TCCACTT 39801
|| || ||||| | |||| | || ||||| | | || || | |||| |
Sbjct 3965230 CACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCCTCTTTGTCGCCAGTCCAATG 3965289
Query 39802 CTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA 39861
| ||||| || || ||||||||||||||||||||| | | || || |||||| |
Sbjct 3965290 CAAGGCCCAGTCTGC---CTTCTTTACACAAGGCATTGTCTGGAGGGCGTTGAAGAGAAA 3965346
Query 39862 ATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATG 39921
| |||| || ||||||||| || | || || | ||||| ||||| || |||||
Sbjct 3965347 TTCCCTTTCTTCGGAATCTTTAACGTAACTGTCAATGAGGAGACTGTACATCTCAGAATG 3965406
Query 39922 GATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTC 39981
||||||||| || || || || || || || ||||| | ||||| ||||| || || ||
Sbjct 3965407 GATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 3965466
Query 39982 TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGC 40041
| | ||| | ||| |||| |||||||| ||||| |||||||| | |||| || ||
Sbjct 3965467 TTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTCGGCACAAAGAAAGC 3965526
Query 40042 CAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCC-AGTCATTGATAT 40100
|| || || | ||| ||| | || || || || | ||||| || | || |
Sbjct 3965527 CAGAACGTGGGATAGAAAGTATCTCTCCTCAGGCTTC-AGGGATTCCTGGTGCTGAATGT 3965585
Query 40101 CTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGT 40160
| || || | ||| || ||||||||||||||||| || ||||| || || | ||||| |
Sbjct 3965586 CCTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTCATACATCT 3965645
Query 40161 TCCATATATCACGATATTGTATTGGAAAAATAACAAA 40197
||| |||||| | || | | || || || |||||
Sbjct 3965646 GCCAAATATCAAGGTACTCGACAGGGAAGATGACAAA 3965682
>seq3332
Length=249688
Score = 230 bits (254), Expect = 3e-55
Identities = 623/943 (66%), Gaps = 19/943 (2%)
Strand=Plus/Minus
Query 39271 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTG----TGACATAACTCCCATTT 39326
||| |||||| ||| | | |||| ||| | || ||| |||||| ||||| ||
Sbjct 149026 TTATAAGTCAGTATCCACGGTAAAAGAATTCT-TTGTTGGACTTGACATCACTCCTATCC 148968
Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386
| || || | || | | ||||| || || ||||| || ||||||| ||| ||||| |
Sbjct 148967 TCTGATACTTGCCTCCTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCT 148908
Query 39387 CCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCA 39446
|||| | ||||| ||||| | | | | || |||| |||| || | | |
Sbjct 148907 CCATAAGGTCAAATGGATTTTCTACTCTGGAAACCTTGCTAAAACCTAGTTTCTACCTAA 148848
Query 39447 ATCTATCTGCAACAAATTCTATGTA-TGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505
|| ||||| | ||||| || || || ||| | | | || ||||| || |||||
Sbjct 148847 GTCAGTCTGCCATGAATTCAATATACTGCTTTATTAACATG-CAGTTCATCCCAATGAGC 148789
Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTA-TTAT 39564
|| || || | |||| | || ||||| | || || || || | || || ||||
Sbjct 148788 TTCACGGGCAAGGCCTGTGGGAGGAACTCCTGGTCTATCCTAACAGCAT-TGATAGTTAT 148730
Query 39565 CGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAA 39624
| ||| || || ||| ||| | | ||||| ||||| | |||||| ||
Sbjct 148729 TTCCTTCACTCTCTGCTCTGAAGGTTTATGGACCAGGTGTTTGAACATCAGGCAGGCAAA 148670
Query 39625 GTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAAT-GTGAGTCCAGGCA 39683
|| | |||| ||||||||||| ||||| | || || ||||| ||||| |||||||
Sbjct 148669 GTTATGGTGTAAACCCTCATCTCTGCTAATAAGCTCATTGGAAAACCGTGAGGCCAGGCA 148610
Query 39684 TTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTT 39743
| || | | || |||||||| ||||| | ||| |||| ||| ||||| |||| ||||
Sbjct 148609 TCAGGCTGCATTTCTTGAGCCAGAATATCGACGCAGAAGAACCAAAAAAGGAGATTCCTT 148550
Query 39744 CTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT---ATCCACT 39800
| || ||||| | ||| | || ||||| | | || || | | |||
Sbjct 148549 CCGTGGCAGCAAAGTCCACATCCCATTCCCCGTAGGTAGCCTCTTTGTCCCCAACCCAAC 148490
Query 39801 TCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAT 39860
| |||||||| || |||||| || ||||||||||||| || || | || ||||||
Sbjct 148489 ACAAGGCCCAATCTGCCTTCTTCCTTCCACAAGGCATTGTCTCGATGGTGTTGAAGAGAA 148430
Query 39861 AATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAAT 39920
| | | | || | |||||||| ||| || || | | |||||| |||| || ||||
Sbjct 148429 ATTCTGTCTCTTTGGAATCTTTAATATAAGTGTCAGTGAGGAGACTACACATCTCAGAAT 148370
Query 39921 GGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCT 39980
|||||||||| || || || || || || || ||||| | ||||| || || || || |
Sbjct 148369 GGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGGCTTCTGTCATCTGAACTT 148310
Query 39981 CTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATG 40040
|| | | | | ||| |||| |||||||| ||| | ||| |||| | ||||| || |
Sbjct 148309 CTTGGCCACACCACTCCACCAAGTTTTCATTTACTGTGCCAACACTCACCGCAAAGAAAG 148250
Query 40041 CC--AAT----ACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCAT 40094
|| ||| || || ||||||| | | || || || ||| | ||||| |
Sbjct 148249 CCAGAATGTGAACGTGGGGTATAAAATCTCTCTCCTCAGGCTTCAGCGATTCCCAGTGTT 148190
Query 40095 TGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGT 40154
|| || || || | || || ||||||||||||||||| || ||||| || || ||
Sbjct 148189 GAATGTCCTTGGAAAGATTCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTAC 148130
Query 40155 ACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAA 40197
|||| | ||| | ||| | || | || || || || |||||
Sbjct 148129 ACATCTGCCAAAGGTCATGGTACTTCATAGGGAAGATGACAAA 148087
>seq878
Length=898115
Score = 123 bits (136), Expect = 3e-23
Identities = 103/126 (82%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||| ||||| | ||| || ||||| ||||| |||||||| || || || || |
Sbjct 679154 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCT 679095
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
||||||| ||||| | |||||||| |||||||||||||| ||||| || || ||||| |
Sbjct 679094 TGAGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 679035
Query 39759 CAACAA 39764
| ||||
Sbjct 679034 CCACAA 679029
>seq348
Length=1658837
Score = 123 bits (136), Expect = 3e-23
Identities = 107/133 (80%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778
|||||||| || || || ||||| ||||| || || || |||||||| ||||| | ||
Sbjct 305685 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATGGAC 305626
Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838
||||||||||||||||| ||||||||||| ||||| ||||| || || | | ||||||
Sbjct 305625 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 305566
Query 68839 TTTCTAAGACCAT 68851
||||| | |||||
Sbjct 305565 TTTCTTATACCAT 305553
Score = 123 bits (136), Expect = 3e-23
Identities = 130/171 (76%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500
|||| ||||||||||||||||| || |||||| ||| | || || || || || || |
Sbjct 308371 TCCAGCCGTAGAAATGCATACTGGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 308312
Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560
||| ||||| |||||||| |||||||| ||||| || || ||||| || | || | |
Sbjct 308311 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTTTCAGCTGCCATCTTAAGAACGGTTT 308252
Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611
| || | ||||||||||| ||||||| ||| || || | ||||| ||||
Sbjct 308251 TCTGTGAAATTTCCCAAACAGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 308201
Score = 111 bits (122), Expect = 2e-19
Identities = 127/171 (74%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 70331 CATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTA 70390
|| |||| || | ||| |||||||| ||||| || || || | ||| || || ||||| |
Sbjct 282580 CACCACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACGGCAATCCTTGCTGCCA 282521
Query 70391 GAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTAT 70450
| || |||||||||||||| | || || | || || ||| | || ||||| || ||||
Sbjct 282520 GGATGGCATAGTCAGGATGCTTAGTTGTCAAGGTCGCAGCTGTCTCAGCAGCCAAAGTAT 282461
Query 70451 CTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501
||| ||| | ||| || || || | |||| ||||| || ||||||||||
Sbjct 282460 CTAGTTCCACAGTGGTGACCCCACTGTATAAGCCTTGGATTACTTTCATGG 282410
Score = 93.3 bits (102), Expect = 6e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654
||||||||||| || ||||| ||||||||||| || | || || || |||| | | |
Sbjct 296253 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGT 296194
Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714
||||| |||||||| || || || | ||| |||||||| | ||| || ||||||| ||
Sbjct 296193 TCTTCCTTTCCTGTGTTCTTCTTTAAATCCAGAAACTCAAAAATGTCTAAATGCCAAGGC 296134
Query 69715 TCTAGATATATCGC 69728
|| || || || ||
Sbjct 296133 TCCAGGTAAATAGC 296120
Score = 87.8 bits (96), Expect = 2e-12
Identities = 106/142 (75%), Gaps = 2/142 (1%)
Strand=Plus/Minus
Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050
|| || ||||| || | || ||||| || || || ||||| || |||||||| || |||
Sbjct 288017 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 287958
Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGA-TGAATTCCTATCGCGACACGCATCAA 70109
|||||||||||||| | || ||||| ||| ||||| || | | || | ||||||
Sbjct 287957 TATGTTTCAATAGCAGCATCAATATCTT-CTGCGTGAATCCCCACAGACACCCTCATCAA 287899
Query 70110 CATATGCTGAGGTCGTTCTACC 70131
|||||| || |||| |||| ||
Sbjct 287898 CATATGTTGTGGTCTTTCTGCC 287877
Score = 86.0 bits (94), Expect = 9e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 69507 ATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACA 69566
||||||| || ||||| ||||||||||| ||||||| ||||||||||||||||||||
Sbjct 296708 ATATAGCTTCTCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACATTCATTTGGACA 296649
Query 69567 CATCAATGACCA 69578
|| ||| |||||
Sbjct 296648 CAACAAGGACCA 296637
>seq674
Length=1058379
Score = 116 bits (128), Expect = 5e-21
Identities = 106/134 (79%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700
|||||||| || || | ||| || ||||| |||||||| ||||| ||||| | || ||
Sbjct 558248 TCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCGGGCATGAGACCTCTTTTCTTT 558189
Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760
||||| ||||| |||||||||||||| || ||||| || |||||||| || ||||| ||
Sbjct 558188 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAGCC 558129
Query 39761 ACAAGTCTCTCTCC 39774
|| | ||| || ||
Sbjct 558128 ACCACTCTTTCCCC 558115
Score = 89.7 bits (98), Expect = 7e-13
Identities = 94/123 (76%), Gaps = 3/123 (2%)
Strand=Plus/Minus
Query 39987 AAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046
|||||||| || |||||||||||||| ||||||||||| || |||||||| || ||||
Sbjct 552693 AAAATCTTACC---AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAATA 552637
Query 40047 CATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTG 40106
|| |||||||| || ||||| | | | | || ||||||| | || ||| ||||
Sbjct 552636 TGTGAGAGATAAAATACTTCTCATCCGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 552577
Query 40107 ATA 40109
|||
Sbjct 552576 ATA 552574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686765313338040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |