Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq19 250 2e-61
seq3332 170 2e-37
seq6445 118 8e-22
seq878 107 2e-18
seq674 86.0 5e-12
>seq19
Length=4596781
Score = 250 bits (276), Expect = 2e-61
Identities = 611/911 (67%), Gaps = 24/911 (3%)
Strand=Plus/Minus
Query 43684 AGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTA 43743
|||||| || | | | |||||| | || || | | || | ||| || ||||| |||||
Sbjct 3965697 AGAAAACCC-TGTCGCTTTGTCATCTTCCCTGTCGAGTACCTTGATATTTGGCAGATGTA 3965639
Query 43744 CAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTT--A 43801
| ||||| |||| || ||||||||||| ||||| || ||| | | || ||| | |
Sbjct 3965638 TGAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAAGAGGTGGATCTTTCCAAGGACATTCA 3965579
Query 43802 GCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTT 43861
|||| | || | | || || | || | | | ||| |||| ||| |||| ||
Sbjct 3965578 GCACCAGGAATCCC--TGAAGCCTGAGGAGAGATACTTTCTATCCCACGTTCTGGCTTTC 3965521
Query 43862 TTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTT 43921
|||| |||| || || ||||| |||||||| ||||| |||||| |||||||||
Sbjct 3965520 TTTGTGCCGAGTGATGGCATAGTAAATGAAAACTTGGTGGAGCGGTTTAGCCAAGAAGTT 3965461
Query 43922 CA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTC 43980
|| ||||| |||||| || ||||| ||||| || ||||||||||| ||||| || |||||
Sbjct 3965460 CAGATTAC-AGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATCCATTC 3965402
Query 43981 GGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATT 44040
|| ||||||||||| || || || | ||| | |||||| | || | | | |
Sbjct 3965401 TGAGATGTACAGTCTCCTCATTGACAGTTACGTTAAAGATTCCGAAGAAAGGGAATTTCT 3965342
Query 44041 GTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATG 44100
|| || || | | ||| | ||| | ||| | || |||||||||||| | | ||
Sbjct 3965341 CTTCAACGCCCTCCAGACAATGCCT-TGTGTAA--AGAAGGCAGACTGGGCCTTGCATTG 3965285
Query 44101 GA-TAAATTCAA--ATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGG 44157
|| | ||| | | | | | || ||||| |||| | ||||| | |||||||||
Sbjct 3965284 GACTGGCGACAAAGAGGCTACCTACGGGGAACGGGTTGTGGACTTTGCTGCTGTGGAAGG 3965225
Query 44158 CATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCC 44217
|| |||||||| || || |||||| | ||||| ||| | |||||||| | |||||||
Sbjct 3965224 AATCTTCTTTTCTGGTTCTTTTGCGACGATATTCTGGCTCAAGAAACGCGACCTGATGCC 3965165
Query 44218 TGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGC 44277
| || |||||||||| ||||| | || || | ||||| || ||||| || || |||||
Sbjct 3965164 T-GGCTGACGTTTTCCAATGAACTTATTAGCAGAGATGAGGGTTTACACTGTGACTTTGC 3965106
Query 44278 TTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATAT 44337
||| || | | | | || | | | || ||||| ||| | | | || ||
Sbjct 3965105 CTGCCTGATGTTCAAACAACT---GGTCCACAAACCTTCCAAGCAGAGAGTGAAGGAAAT 3965049
Query 44338 TGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTT 44397
|| | | || || |||||| || | || | || | || ||||| || |
Sbjct 3965048 AATTATTAATGCCGTTCGGATAGAGCAGGGGTTCCTCACGGAGACCTTGCCTGTGAAGCT 3964989
Query 44398 AATAGGAATGAA-TGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTAC 44456
|| | ||||| || || || ||||| || |||||||| | | | ||||| || |
Sbjct 3964988 CATTAGGATGAATTGCAC-GTTAATGAAGCAGTATATTGAGTTCGTGGCAGACCGACTTA 3964930
Query 44457 TTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAA 44516
| |||| || |||| | || | | ||| |||| || ||||| || ||||| |
Sbjct 3964929 TGCTGGAGCTAGGTTTTGGCAAGGTTTTCAGAGTAGAAAATCCATTTGACTTCATGGAGA 3964870
Query 44517 ATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAA 44576
||||||| ||||||| ||||| |||||||| | || || || |||||| | |
Sbjct 3964869 ATATTTCACTGGAAGG-----GGAACTTCTTTGAAAAGAGAGTAGGTGAGTATCAGAGGA 3964815
Query 44577 TGGGCGTCATG 44587
|||| || |||
Sbjct 3964814 TGGGAGTGATG 3964804
>seq3332
Length=249688
Score = 170 bits (188), Expect = 2e-37
Identities = 602/927 (65%), Gaps = 29/927 (3%)
Strand=Plus/Plus
Query 43679 CTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAA 43738
|| |||||||| || | | |||||| | || || || | || |||||| | |||||
Sbjct 148066 CTGACAGAAAACCCTCTTCGCTTTGTCATCTTCCCTATGAAGTACCATGACCTTTGGCAG 148125
Query 43739 ATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGAC 43798
|||| || ||||| |||| || ||||||||||| ||||| || || | | || |||
Sbjct 148126 ATGTGTAAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAAGAGGTGAATCTTTCCAAGGAC 148185
Query 43799 TTAGCACATTGG--ATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTT--- 43853
| ||| ||| || || | || || | || | | |||||||| | |||
Sbjct 148186 ATTCAACACTGGGAATCGC--TGAAGCCTGAGGAGAGAGATTTTATACCCCACGTTCACA 148243
Query 43854 ---TGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTT-AGTCGGTTT 43909
|||| || ||||| | ||| | || | ||| |||||||| ||||| ||| ||| |
Sbjct 148244 TTCTGGCTTTCTTTGCGGTGAGTGTTGGCACAGTAAATGAAAACTTGGTGGAGT-GGTGT 148302
Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969
| ||||||||||| | ||||||| | ||||| ||||| || ||||||||||| |||
Sbjct 148303 GGCCAAGAAGTTCAGATGACAGAAGCCTGCTGTTTCTATGGCTTCCAAATTGCCATGGAA 148362
Query 43970 AATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAG 44029
|| || ||||| || |||| ||||| || | || || || || |||||| | |||
Sbjct 148363 AACATCCATTCTGAGATGTGTAGTCTCCTCACTGACACTTATATTAAAGATTCCAAAGAG 148422
Query 44030 A-AGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTG 44088
| || || | || || | || || ||| | ||| | | || ||||| ||
Sbjct 148423 ACAGAAT-TTCTCTTCAACACCATCGAGACAATGCCTTGTGGAAGGAAGAAGGCAGATTG 148481
Query 44089 GGCCCTTAAATGGAT---AAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGC 44145
|||| | ||| | | | | | | | | || ||| | ||| | |||||
Sbjct 148482 GGCCTTGTGTTGGGTTGGGGACAAAGAGGCTACCTACGGGGAATGGGATGTGGACTTTGC 148541
Query 44146 AGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACG 44205
| |||||| || | ||||| || || | |||| | ||||| ||| | |||||| |
Sbjct 148542 TGCCACGGAAGGAATCTCCTTTTTTGGTTCTTCTGCGTCGATATTCTGGCTCAAGAAATG 148601
Query 44206 AGGTTTGATGCCTGGGTTGAC-GTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTAC 44264
| |||||||||| | || |||||| |||||| | || || | ||||| || ||||
Sbjct 148602 CAGCCTGATGCCTGGCCTCACGGTTTTCCAATGAGCTTATTAGCAGAGATGAGGGTTTAC 148661
Query 44265 ATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGA 44324
| | ||||| ||| || | | | | || | | |||| |||||| |||
Sbjct 148662 ACCATAACTTTGCCTGCCTGATGTTCAAACACCT---GGTCCATAAACCTTCAGAGCAGA 148718
Query 44325 CAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCAT 44384
| | | || || | | | || || | |||||| || || || | || || |
Sbjct 148719 GAGTGAAGGAAATAACTATCAATGCTGTTAGGATAGACCAGGAGTTCCTCCCACAGGCCT 148778
Query 44385 TACCTGTAAATTTAATAGGAATGAA-TGAACTTTTGATGAACCAATATATTGAATACATT 44443
| || || || | || || ||||| || | | || || || || |||||||||| |||
Sbjct 148779 TGCCCGTGAAGCTCATTGGGATGAACTGCA-TGTTAATAAAGCAGTATATTGAATTCATG 148837
Query 44444 GCAGATCGTTTACTT---TTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCG 44500
||||| | |||| | | |||| |||| || | | ||| |||| ||
Sbjct 148838 GCAGA---CTGACTTAGGTAGAAACTAGGTTTTAGCAAGGTTTCCAGAGTAGAAAATCCA 148894
Query 44501 TTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTT 44560
||||| ||||||| |||||||| ||||||| || || ||||| ||||| || | |
Sbjct 148895 TTTGACCTTATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTTTGAGAAGAGAGGA 148954
Query 44561 GGAGAATATCAGCGAATGGGCGTCATG 44587
|| | |||||| | || || || |||
Sbjct 148955 GGCAAGTATCAGAGGATAGGAGTGATG 148981
>seq6445
Length=22517
Score = 118 bits (130), Expect = 8e-22
Identities = 191/274 (70%), Gaps = 8/274 (3%)
Strand=Plus/Minus
Query 47216 GTGTTGCAATTTTTAGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGAC 47275
||| | || || ||||||| || | ||||| || ||| | ||||| | || || |||
Sbjct 16700 GTGCTCCAGTTCCTAGGACTCTACAAGAAATCTGGAAAACTTGTATTTTTGGGTTTGGAC 16641
Query 47276 AATGCAGGAAAAACGGCATTACTCCACATGCTCAAATA----CAATTGCATGAAAGAGCA 47331
|||||||| ||||| | | || |||||||||||| | | ||||| || ||
Sbjct 16640 AATGCAGGCAAAACCACTCTTCTACACATGCTCAAAGATGACCGATTGCGCCAA----CA 16585
Query 47332 TAACCCTACATTACATCCGACCTCTGAACAACTAACAATTGCTGGCATAACATTTAGCAC 47391
| || |||||||||||||| || ||| | || ||||||||||| || ||||||| ||
Sbjct 16584 TGTTCCAACATTACATCCGACATCAGAAGAGCTTACAATTGCTGGAATGACATTTACAAC 16525
Query 47392 ATTTGATTTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATTATTTTCATGTCGT 47451
|||||| | || || || |||| ||| | | ||| ||||||| | | | |
Sbjct 16524 TTTTGATCTTGGTGGGCATGAGCAAGTACGTCGGGTTTGGAAAAATTACCTCCCAGCAAT 16465
Query 47452 TGATGCTATAGTTTATATTGTAGACTGTGCAGAT 47485
| ||| || |||| | | || ||||||||||||
Sbjct 16464 TAATGGGATTGTTTTTCTGGTCGACTGTGCAGAT 16431
>seq878
Length=898115
Score = 107 bits (118), Expect = 2e-18
Identities = 96/118 (81%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962
|||||| ||||||||||| |||| ||||||| || ||||| ||||| || ||||||||
Sbjct 677010 CGGTTTAGCCAAGAAGTTCAGATTA-CAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGC 677068
Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
||| ||||| || ||||| || ||||||||||| || || || || || || ||||||
Sbjct 677069 CATGGAAAACATCCATTCTGAGATGTACAGTCTCCTCATTGACACTTATATTAAAGAT 677126
>seq674
Length=1058379
Score = 86.0 bits (94), Expect = 5e-12
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552
|||| || |||||||||||||| || ||||| || ||||| |||||||| || ||||| |
Sbjct 573866 AAAATCCCTTTGATTTTATGGAGAACATTTCTTTAGAAGGGAAAACAAATTTCTTTGAGA 573925
Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587
|||| |||| ||| ||||| || | | ||||||
Sbjct 573926 AACGAGTTGCAGAGTATCAACGTTTTGCAGTCATG 573960
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397375051999555
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