Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq19 250 2e-61 seq3332 170 2e-37 seq6445 118 8e-22 seq878 107 2e-18 seq674 86.0 5e-12 >seq19 Length=4596781 Score = 250 bits (276), Expect = 2e-61 Identities = 611/911 (67%), Gaps = 24/911 (3%) Strand=Plus/Minus Query 43684 AGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTA 43743 |||||| || | | | |||||| | || || | | || | ||| || ||||| ||||| Sbjct 3965697 AGAAAACCC-TGTCGCTTTGTCATCTTCCCTGTCGAGTACCTTGATATTTGGCAGATGTA 3965639 Query 43744 CAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTT--A 43801 | ||||| |||| || ||||||||||| ||||| || ||| | | || ||| | | Sbjct 3965638 TGAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAAGAGGTGGATCTTTCCAAGGACATTCA 3965579 Query 43802 GCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTT 43861 |||| | || | | || || | || | | | ||| |||| ||| |||| || Sbjct 3965578 GCACCAGGAATCCC--TGAAGCCTGAGGAGAGATACTTTCTATCCCACGTTCTGGCTTTC 3965521 Query 43862 TTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTT 43921 |||| |||| || || ||||| |||||||| ||||| |||||| ||||||||| Sbjct 3965520 TTTGTGCCGAGTGATGGCATAGTAAATGAAAACTTGGTGGAGCGGTTTAGCCAAGAAGTT 3965461 Query 43922 CA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTC 43980 || ||||| |||||| || ||||| ||||| || ||||||||||| ||||| || ||||| Sbjct 3965460 CAGATTAC-AGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATCCATTC 3965402 Query 43981 GGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATT 44040 || ||||||||||| || || || | ||| | |||||| | || | | | | Sbjct 3965401 TGAGATGTACAGTCTCCTCATTGACAGTTACGTTAAAGATTCCGAAGAAAGGGAATTTCT 3965342 Query 44041 GTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATG 44100 || || || | | ||| | ||| | ||| | || |||||||||||| | | || Sbjct 3965341 CTTCAACGCCCTCCAGACAATGCCT-TGTGTAA--AGAAGGCAGACTGGGCCTTGCATTG 3965285 Query 44101 GA-TAAATTCAA--ATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGG 44157 || | ||| | | | | | || ||||| |||| | ||||| | ||||||||| Sbjct 3965284 GACTGGCGACAAAGAGGCTACCTACGGGGAACGGGTTGTGGACTTTGCTGCTGTGGAAGG 3965225 Query 44158 CATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCC 44217 || |||||||| || || |||||| | ||||| ||| | |||||||| | ||||||| Sbjct 3965224 AATCTTCTTTTCTGGTTCTTTTGCGACGATATTCTGGCTCAAGAAACGCGACCTGATGCC 3965165 Query 44218 TGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGC 44277 | || |||||||||| ||||| | || || | ||||| || ||||| || || ||||| Sbjct 3965164 T-GGCTGACGTTTTCCAATGAACTTATTAGCAGAGATGAGGGTTTACACTGTGACTTTGC 3965106 Query 44278 TTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATAT 44337 ||| || | | | | || | | | || ||||| ||| | | | || || Sbjct 3965105 CTGCCTGATGTTCAAACAACT---GGTCCACAAACCTTCCAAGCAGAGAGTGAAGGAAAT 3965049 Query 44338 TGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTT 44397 || | | || || |||||| || | || | || | || ||||| || | Sbjct 3965048 AATTATTAATGCCGTTCGGATAGAGCAGGGGTTCCTCACGGAGACCTTGCCTGTGAAGCT 3964989 Query 44398 AATAGGAATGAA-TGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTAC 44456 || | ||||| || || || ||||| || |||||||| | | | ||||| || | Sbjct 3964988 CATTAGGATGAATTGCAC-GTTAATGAAGCAGTATATTGAGTTCGTGGCAGACCGACTTA 3964930 Query 44457 TTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAA 44516 | |||| || |||| | || | | ||| |||| || ||||| || ||||| | Sbjct 3964929 TGCTGGAGCTAGGTTTTGGCAAGGTTTTCAGAGTAGAAAATCCATTTGACTTCATGGAGA 3964870 Query 44517 ATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAA 44576 ||||||| ||||||| ||||| |||||||| | || || || |||||| | | Sbjct 3964869 ATATTTCACTGGAAGG-----GGAACTTCTTTGAAAAGAGAGTAGGTGAGTATCAGAGGA 3964815 Query 44577 TGGGCGTCATG 44587 |||| || ||| Sbjct 3964814 TGGGAGTGATG 3964804 >seq3332 Length=249688 Score = 170 bits (188), Expect = 2e-37 Identities = 602/927 (65%), Gaps = 29/927 (3%) Strand=Plus/Plus Query 43679 CTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAA 43738 || |||||||| || | | |||||| | || || || | || |||||| | ||||| Sbjct 148066 CTGACAGAAAACCCTCTTCGCTTTGTCATCTTCCCTATGAAGTACCATGACCTTTGGCAG 148125 Query 43739 ATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGAC 43798 |||| || ||||| |||| || ||||||||||| ||||| || || | | || ||| Sbjct 148126 ATGTGTAAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAAGAGGTGAATCTTTCCAAGGAC 148185 Query 43799 TTAGCACATTGG--ATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTT--- 43853 | ||| ||| || || | || || | || | | |||||||| | ||| Sbjct 148186 ATTCAACACTGGGAATCGC--TGAAGCCTGAGGAGAGAGATTTTATACCCCACGTTCACA 148243 Query 43854 ---TGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTT-AGTCGGTTT 43909 |||| || ||||| | ||| | || | ||| |||||||| ||||| ||| ||| | Sbjct 148244 TTCTGGCTTTCTTTGCGGTGAGTGTTGGCACAGTAAATGAAAACTTGGTGGAGT-GGTGT 148302 Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969 | ||||||||||| | ||||||| | ||||| ||||| || ||||||||||| ||| Sbjct 148303 GGCCAAGAAGTTCAGATGACAGAAGCCTGCTGTTTCTATGGCTTCCAAATTGCCATGGAA 148362 Query 43970 AATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAG 44029 || || ||||| || |||| ||||| || | || || || || |||||| | ||| Sbjct 148363 AACATCCATTCTGAGATGTGTAGTCTCCTCACTGACACTTATATTAAAGATTCCAAAGAG 148422 Query 44030 A-AGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTG 44088 | || || | || || | || || ||| | ||| | | || ||||| || Sbjct 148423 ACAGAAT-TTCTCTTCAACACCATCGAGACAATGCCTTGTGGAAGGAAGAAGGCAGATTG 148481 Query 44089 GGCCCTTAAATGGAT---AAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGC 44145 |||| | ||| | | | | | | | | || ||| | ||| | ||||| Sbjct 148482 GGCCTTGTGTTGGGTTGGGGACAAAGAGGCTACCTACGGGGAATGGGATGTGGACTTTGC 148541 Query 44146 AGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACG 44205 | |||||| || | ||||| || || | |||| | ||||| ||| | |||||| | Sbjct 148542 TGCCACGGAAGGAATCTCCTTTTTTGGTTCTTCTGCGTCGATATTCTGGCTCAAGAAATG 148601 Query 44206 AGGTTTGATGCCTGGGTTGAC-GTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTAC 44264 | |||||||||| | || |||||| |||||| | || || | ||||| || |||| Sbjct 148602 CAGCCTGATGCCTGGCCTCACGGTTTTCCAATGAGCTTATTAGCAGAGATGAGGGTTTAC 148661 Query 44265 ATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGA 44324 | | ||||| ||| || | | | | || | | |||| |||||| ||| Sbjct 148662 ACCATAACTTTGCCTGCCTGATGTTCAAACACCT---GGTCCATAAACCTTCAGAGCAGA 148718 Query 44325 CAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCAT 44384 | | | || || | | | || || | |||||| || || || | || || | Sbjct 148719 GAGTGAAGGAAATAACTATCAATGCTGTTAGGATAGACCAGGAGTTCCTCCCACAGGCCT 148778 Query 44385 TACCTGTAAATTTAATAGGAATGAA-TGAACTTTTGATGAACCAATATATTGAATACATT 44443 | || || || | || || ||||| || | | || || || || |||||||||| ||| Sbjct 148779 TGCCCGTGAAGCTCATTGGGATGAACTGCA-TGTTAATAAAGCAGTATATTGAATTCATG 148837 Query 44444 GCAGATCGTTTACTT---TTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCG 44500 ||||| | |||| | | |||| |||| || | | ||| |||| || Sbjct 148838 GCAGA---CTGACTTAGGTAGAAACTAGGTTTTAGCAAGGTTTCCAGAGTAGAAAATCCA 148894 Query 44501 TTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTT 44560 ||||| ||||||| |||||||| ||||||| || || ||||| ||||| || | | Sbjct 148895 TTTGACCTTATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTTTGAGAAGAGAGGA 148954 Query 44561 GGAGAATATCAGCGAATGGGCGTCATG 44587 || | |||||| | || || || ||| Sbjct 148955 GGCAAGTATCAGAGGATAGGAGTGATG 148981 >seq6445 Length=22517 Score = 118 bits (130), Expect = 8e-22 Identities = 191/274 (70%), Gaps = 8/274 (3%) Strand=Plus/Minus Query 47216 GTGTTGCAATTTTTAGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGAC 47275 ||| | || || ||||||| || | ||||| || ||| | ||||| | || || ||| Sbjct 16700 GTGCTCCAGTTCCTAGGACTCTACAAGAAATCTGGAAAACTTGTATTTTTGGGTTTGGAC 16641 Query 47276 AATGCAGGAAAAACGGCATTACTCCACATGCTCAAATA----CAATTGCATGAAAGAGCA 47331 |||||||| ||||| | | || |||||||||||| | | ||||| || || Sbjct 16640 AATGCAGGCAAAACCACTCTTCTACACATGCTCAAAGATGACCGATTGCGCCAA----CA 16585 Query 47332 TAACCCTACATTACATCCGACCTCTGAACAACTAACAATTGCTGGCATAACATTTAGCAC 47391 | || |||||||||||||| || ||| | || ||||||||||| || ||||||| || Sbjct 16584 TGTTCCAACATTACATCCGACATCAGAAGAGCTTACAATTGCTGGAATGACATTTACAAC 16525 Query 47392 ATTTGATTTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATTATTTTCATGTCGT 47451 |||||| | || || || |||| ||| | | ||| ||||||| | | | | Sbjct 16524 TTTTGATCTTGGTGGGCATGAGCAAGTACGTCGGGTTTGGAAAAATTACCTCCCAGCAAT 16465 Query 47452 TGATGCTATAGTTTATATTGTAGACTGTGCAGAT 47485 | ||| || |||| | | || |||||||||||| Sbjct 16464 TAATGGGATTGTTTTTCTGGTCGACTGTGCAGAT 16431 >seq878 Length=898115 Score = 107 bits (118), Expect = 2e-18 Identities = 96/118 (81%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| ||||||||||| |||| ||||||| || ||||| ||||| || |||||||| Sbjct 677010 CGGTTTAGCCAAGAAGTTCAGATTA-CAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGC 677068 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| ||||| || ||||| || ||||||||||| || || || || || || |||||| Sbjct 677069 CATGGAAAACATCCATTCTGAGATGTACAGTCTCCTCATTGACACTTATATTAAAGAT 677126 >seq674 Length=1058379 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || |||||||||||||| || ||||| || ||||| |||||||| || ||||| | Sbjct 573866 AAAATCCCTTTGATTTTATGGAGAACATTTCTTTAGAAGGGAAAACAAATTTCTTTGAGA 573925 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 |||| |||| ||| ||||| || | | |||||| Sbjct 573926 AACGAGTTGCAGAGTATCAACGTTTTGCAGTCATG 573960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397375051999555