Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq788 95.1 1e-14 seq541 86.0 5e-12 seq348 84.2 2e-11 >seq788 Length=1000743 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || ||||| || ||||| ||||| || | || | ||||| Sbjct 445015 ACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACGGCCATCTTCC 445074 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 |||||||| || || ||| |||||||| || || ||||| | ||||| || || | Sbjct 445075 AGCTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTGG 445134 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || ||| ||| | | || | ||||| ||| || || || || || || | ||| Sbjct 445135 ATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTG 445194 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGC 27253 |||||||| || ||||||||||| ||||| |||| Sbjct 445195 CCCGTCAGGGTCTTCACAAAGATCTGCATCTCTGC 445229 >seq541 Length=1170729 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| || || ||||| || | |||| | ||||| ||||| || || Sbjct 610536 GTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 610595 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||| | ||| || || || || | ||||||||||| ||||||| ||| Sbjct 610596 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCTTGGATCTTGGCCTTC 610655 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | |||| | ||||| ||| || || || || || || | ||||| ||||| || Sbjct 610656 ACGTTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 610715 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 610716 TTCACGAAGATCTGCAT 610732 >seq348 Length=1658837 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 131030 GCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTT 131089 |||||||| ||| |||||||| ||||| |||||||||||||| || || ||||| Sbjct 300788 GCCAGGTCACAGCTGGCTTCCAAGGCTCCATAATAAATGGTTTCAAAGATCTGCTTATTC 300729 Query 131090 AATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGA 131149 | | | | |||| ||||| ||||| | |||| | ||||||||| ||||| ||| Sbjct 300728 AGTAGCTGGGCTTCTGGACTCTCAAAAGGATACCTCATCAGAATAAAAGCATCTGCCAGA 300669 Query 131150 CCCTGTATCCC 131160 || |||| ||| Sbjct 300668 CCTTGTACCCC 300658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424847855602632