Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq696 104 3e-17
seq2206 100 3e-16
seq878 89.7 6e-13
>seq696
Length=1093631
Score = 104 bits (114), Expect = 3e-17
Identities = 98/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|||||||| ||||||| |||||||||||| ||||||||| ||| || || || || ||
Sbjct 1018687 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 1018628
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | |||| | | ||| | ||||||| ||||||||||| |||||||| || |||
Sbjct 1018627 CCAATAGGCTGAAGCAAGTTAATGTTGTTGCTTCCCACAAAGTTCTGAGCCAAATTCACA 1018568
Query 117425 ATCGT 117429
|| ||
Sbjct 1018567 ATAGT 1018563
Score = 95.1 bits (104), Expect = 1e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
||||| || || || | ||| || ||||| |||||||| ||||| |||||||||||
Sbjct 1018687 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 1018628
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
||| |||| || | ||| | ||||||| ||||| || ||||||||||||||||||
Sbjct 1018627 CCAATAGGCTGAAGCAAGTTAATGTTGTTGCTTCCCACAAAGTTCTGAGCCAAATTCACA 1018568
Query 152149 ATCGT 152153
|| ||
Sbjct 1018567 ATAGT 1018563
>seq2206
Length=432574
Score = 100 bits (110), Expect = 3e-16
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
|||||||||||||| | || || | |||||||||||| ||||| || ||||||||
Sbjct 165969 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTAGTACCAAACTGA 165910
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
||| ||||| | |||||| || || ||| ||||| ||||||||||||||||| | |
Sbjct 165909 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 165850
Query 152149 ATCGT 152153
|| ||
Sbjct 165849 ATGGT 165845
Score = 100 bits (110), Expect = 3e-16
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
||||| ||||| |||| || |||| ||||||||||||| || | ||||| || ||
Sbjct 165969 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTAGTACCAAACTGA 165910
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | |||| |||||||||||| || ||| |||||||| || |||||||| |||| |
Sbjct 165909 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 165850
Query 117425 ATCGT 117429
|| ||
Sbjct 165849 ATGGT 165845
>seq878
Length=898115
Score = 89.7 bits (98), Expect = 6e-13
Identities = 100/131 (76%), Gaps = 2/131 (2%)
Strand=Plus/Minus
Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831
||||||||||| || | |||||| ||||||| ||||||||||| || || || |||||
Sbjct 679152 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCTTG 679093
Query 74832 AACCAAAAGA-TGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGC 74890
| ||| || | || | || || |||||| |||||||| ||||| ||| ||||| ||
Sbjct 679092 AGCCAGAATATTGACGCA-AAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGC 679034
Query 74891 GACAAGGCGTT 74901
|||| ||||
Sbjct 679033 CACAACCCGTT 679023
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547101693417800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |