Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq788 104 1e-17 seq377 87.8 1e-12 seq9145 82.4 5e-11 seq2520 82.4 5e-11 seq975 82.4 5e-11 seq203 82.4 5e-11 >seq788 Length=1000743 Score = 104 bits (114), Expect = 1e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | |||||| || || ||| ||| || || || ||||| ||||| || || || Sbjct 445006 AGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACGG 445065 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || ||||| || ||||| | | |||||| ||||| ||||| | |||||| Sbjct 445066 CCATCTTCCAGCTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGGGATGCCCTCC 445125 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| ||| | ||| || | ||| ||||| | ||| || || | ||| Sbjct 445126 TTGTCTTGGAT-TTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGT 445184 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || |||||||| |||||||| Sbjct 445185 GATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 445223 >seq377 Length=1354867 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || || ||| |||| || || || ||| || || ||||||||||| || Sbjct 824402 GCCACCCCTCAGGTGCAGAACCAGGTGCAGGGTCGACTCTTTCTGGATGTTATAATCAGA 824461 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 824462 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 824521 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||||| || ||| |||||| || | | || ||||| | |||||| Sbjct 824522 GATGCCCTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCAC 824581 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 |||| || || || || ||||||| || ||||| || |||||||| |||| Sbjct 824582 CTCCAGGGGGATGGTCTTGCCGGTTAGGGTCTTCACGAAGATCTGCATTTTGA 824634 >seq9145 Length=4041 Score = 82.4 bits (90), Expect = 5e-11 Identities = 154/224 (69%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 34488 AAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCG 34547 ||| | |||||| | ||| |||||| | ||||||||||||| || || || | || || Sbjct 279 AAGTCTCAACACAAGATGAAGAGTGGACGCCTTTTGAATGTTGTAGTCAGACAAAGTACG 338 Query 34548 CTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTC 34607 | ||||| ||||| || || ||||| || | | ||| || || || || | ||| || Sbjct 339 TCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTC 398 Query 34608 CTT-GTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGG 34666 ||| |||| ||||| |||| | ||||| ||| | || || || | | Sbjct 399 CTTATTCTG-AATCTTGGCCTTTATATTTTCTATTGTATCTGAGGGTTCAACCTCGAGAG 457 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 | || || || || || | |||||||| ||||||||||| ||| Sbjct 458 TGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTTG 501 >seq2520 Length=369870 Score = 82.4 bits (90), Expect = 5e-11 Identities = 154/224 (69%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 34488 AAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCG 34547 ||| | |||||| | ||| |||||| | ||||||||||||| || || || | || || Sbjct 184209 AAGTCTCAACACAAGATGAAGAGTGGACGCCTTTTGAATGTTGTAGTCAGACAAAGTACG 184150 Query 34548 CTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTC 34607 | ||||| ||||| || || ||||| || | | ||| || || || || | ||| || Sbjct 184149 TCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTC 184090 Query 34608 CTT-GTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGG 34666 ||| |||| ||||| |||| | ||||| ||| | || || || | | Sbjct 184089 CTTATTCTG-AATCTTGGCCTTTATATTTTCTATTGTATCTGAGGGTTCAACCTCGAGAG 184031 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 | || || || || || | |||||||| ||||||||||| ||| Sbjct 184030 TGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTTG 183987 >seq975 Length=833997 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| | |||||| | ||| ||||| ||||||||||||||| || || || Sbjct 558488 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAC 558547 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| ||||| || || ||||| || | | ||| || || || || Sbjct 558548 AAAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 558607 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGT-CTTCGCTCTCCAC 34658 | ||| ||||| || ||||| |||| | ||||| | | || | || || Sbjct 558608 ATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGACGGT-TCAAC 558666 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || | ||| || || || || || | |||||||| ||||||||||| ||| Sbjct 558667 CTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 558718 >seq203 Length=1941613 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34497 CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTC 34556 |||||| || || ||| ||| | || || ||||| ||||| || || || | |||| Sbjct 1855974 CACCAAGTGCAGGGTGGACTC--TCTGGATATTATAGTCTGACAGGGTACGGCCAGCTTC 1856031 Query 34557 AAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616 || ||||| || ||||| || | |||||| ||||| ||||| | ||||||||||| Sbjct 1856032 CAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGGATGTCCTCCTTGTCTTG 1856091 Query 34617 GATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTT 34675 ||| ||| | ||| || | ||| ||||| | ||| || || | ||| || | | Sbjct 1856092 GAT-TTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGTTCT 1856150 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || | || ||||| || |||||||| Sbjct 1856151 TGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1856181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314665500497663