Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq788 104 1e-17
seq377 87.8 1e-12
seq9145 82.4 5e-11
seq2520 82.4 5e-11
seq975 82.4 5e-11
seq203 82.4 5e-11
>seq788
Length=1000743
Score = 104 bits (114), Expect = 1e-17
Identities = 156/219 (71%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| || | |||||| || || ||| ||| || || || ||||| ||||| || || ||
Sbjct 445006 AGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACGG 445065
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| ||||| || ||||| || ||||| | | |||||| ||||| ||||| | ||||||
Sbjct 445066 CCATCTTCCAGCTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGGGATGCCCTCC 445125
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| ||| ||| | ||| || | ||| ||||| | ||| || || | |||
Sbjct 445126 TTGTCTTGGAT-TTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGT 445184
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || || || | || |||||||| ||||||||
Sbjct 445185 GATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 445223
>seq377
Length=1354867
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/233 (68%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||| || || || ||| |||| || || || ||| || || ||||||||||| ||
Sbjct 824402 GCCACCCCTCAGGTGCAGAACCAGGTGCAGGGTCGACTCTTTCTGGATGTTATAATCAGA 824461
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
||| || || | ||||| || || || || ||||| || | | ||| ||||| || ||
Sbjct 824462 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 824521
Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658
| ||||| || ||| |||||| || | | || ||||| | ||||||
Sbjct 824522 GATGCCCTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCAC 824581
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711
|||| || || || || ||||||| || ||||| || |||||||| ||||
Sbjct 824582 CTCCAGGGGGATGGTCTTGCCGGTTAGGGTCTTCACGAAGATCTGCATTTTGA 824634
>seq9145
Length=4041
Score = 82.4 bits (90), Expect = 5e-11
Identities = 154/224 (69%), Gaps = 2/224 (1%)
Strand=Plus/Plus
Query 34488 AAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCG 34547
||| | |||||| | ||| |||||| | ||||||||||||| || || || | || ||
Sbjct 279 AAGTCTCAACACAAGATGAAGAGTGGACGCCTTTTGAATGTTGTAGTCAGACAAAGTACG 338
Query 34548 CTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTC 34607
| ||||| ||||| || || ||||| || | | ||| || || || || | ||| ||
Sbjct 339 TCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTC 398
Query 34608 CTT-GTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGG 34666
||| |||| ||||| |||| | ||||| ||| | || || || | |
Sbjct 399 CTTATTCTG-AATCTTGGCCTTTATATTTTCTATTGTATCTGAGGGTTCAACCTCGAGAG 457
Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710
| || || || || || | |||||||| ||||||||||| |||
Sbjct 458 TGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTTG 501
>seq2520
Length=369870
Score = 82.4 bits (90), Expect = 5e-11
Identities = 154/224 (69%), Gaps = 2/224 (1%)
Strand=Plus/Minus
Query 34488 AAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCG 34547
||| | |||||| | ||| |||||| | ||||||||||||| || || || | || ||
Sbjct 184209 AAGTCTCAACACAAGATGAAGAGTGGACGCCTTTTGAATGTTGTAGTCAGACAAAGTACG 184150
Query 34548 CTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTC 34607
| ||||| ||||| || || ||||| || | | ||| || || || || | ||| ||
Sbjct 184149 TCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTC 184090
Query 34608 CTT-GTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGG 34666
||| |||| ||||| |||| | ||||| ||| | || || || | |
Sbjct 184089 CTTATTCTG-AATCTTGGCCTTTATATTTTCTATTGTATCTGAGGGTTCAACCTCGAGAG 184031
Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710
| || || || || || | |||||||| ||||||||||| |||
Sbjct 184030 TGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTTG 183987
>seq975
Length=833997
Score = 82.4 bits (90), Expect = 5e-11
Identities = 159/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | ||| | |||||| | ||| ||||| ||||||||||||||| || || ||
Sbjct 558488 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAC 558547
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| || || | ||||| ||||| || || ||||| || | | ||| || || || ||
Sbjct 558548 AAAGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 558607
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGT-CTTCGCTCTCCAC 34658
| ||| ||||| || ||||| |||| | ||||| | | || | || ||
Sbjct 558608 ATTCCTTCCTTATCCTGAATCTTGGCCTTTACATTTTCTATTGTATCCGACGGT-TCAAC 558666
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710
|| | ||| || || || || || | |||||||| ||||||||||| |||
Sbjct 558667 CTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 558718
>seq203
Length=1941613
Score = 82.4 bits (90), Expect = 5e-11
Identities = 147/211 (70%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 34497 CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTC 34556
|||||| || || ||| ||| | || || ||||| ||||| || || || | ||||
Sbjct 1855974 CACCAAGTGCAGGGTGGACTC--TCTGGATATTATAGTCTGACAGGGTACGGCCAGCTTC 1856031
Query 34557 AAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616
|| ||||| || ||||| || | |||||| ||||| ||||| | |||||||||||
Sbjct 1856032 CAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGGATGTCCTCCTTGTCTTG 1856091
Query 34617 GATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTT 34675
||| ||| | ||| || | ||| ||||| | ||| || || | ||| || | |
Sbjct 1856092 GAT-TTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGTTCT 1856150
Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
| || || | || ||||| || ||||||||
Sbjct 1856151 TGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1856181
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314665500497663
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |