Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq788 118 9e-22
seq975 98.7 9e-16
seq541 96.9 3e-15
seq2471 93.3 4e-14
seq1818 89.7 4e-13
seq293 89.7 4e-13
seq1 86.0 5e-12
seq9145 82.4 7e-11
seq2520 82.4 7e-11
>seq788
Length=1000743
Score = 118 bits (130), Expect = 9e-22
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || || ||||| |||||| | || || ||||| || || ||
Sbjct 445223 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 445164
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||||| |||||| ||||| |||||||| || ||||| || || || ||
Sbjct 445163 GACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCGCCTGACCAG 445104
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | | | || |||||||| ||||||| | || | || || || ||
Sbjct 445103 CAGCGTCTGGTTTTTGCGGGCAAACAGCTGGAAGATGGCCGTACTCTGTCAGACTATAAT 445044
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || || ||||| ||| | || ||||| | || | |||||||||||
Sbjct 445043 ATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGCCTACGGGGTGGCAT 444994
>seq975
Length=833997
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || ||||| || || || ||| | || || || || || ||||||||
Sbjct 558714 ATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCGTCG 558655
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || || | || || || ||||| || || ||||| || || || |||||
Sbjct 558654 GATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAG 558595
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | | || | || ||||| ||| ||||||| | || | || || ||||||
Sbjct 558594 CAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTTTGTCTGACTACAAC 558535
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
|||||||||||||| || | ||| | || ||| | | || |||||
Sbjct 558534 ATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 558488
>seq541
Length=1170729
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || |||||||||||| | || || || || ||||| ||
Sbjct 610732 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 610673
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | || || || || ||||| ||||| ||||| || || || ||
Sbjct 610672 GACACCATCGAAAACGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGACCAG 610613
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | | || | || ||||| || ||||||| | || |||| |||||||||
Sbjct 610612 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 610553
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215
|| || || ||||| || | || ||||| | || || ||||||||
Sbjct 610552 ATCCAGAAAGAGTCAACTCTCCACCTGGTTCTCTGTCTGAGGGGTGGC 610505
>seq2471
Length=386077
Score = 93.3 bits (102), Expect = 4e-14
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| | ||| |||||||||| |||| ||||| || ||||||||
Sbjct 122150 ATGCAGATCTTTGTGAGGACT--GACCGGCAAGACTATCACTCTAGAGGTGGAACCCCGT 122093
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCA-TACCACCCGATCA 27106
||| | || ||| || || || || ||||| |||||||||| |||| | || ||
Sbjct 122092 GACACCATCAAGAATGTGAAGGCTAAGATCCAAGATAAAGAAGGCAGTACCCTCTGACCA 122033
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||| | | || | || ||||| || ||||||| | | | |||| ||||||||
Sbjct 122032 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGA-TGGCCTCACTTTTCTGATTACAA 121974
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215
||| || || | ||| || | || ||||| | | | || ||||||||
Sbjct 121973 CATCCAGAAAGGGTCAACTCTGCACCTGGTTCTCCATCTGAGGGGTGGC 121925
>seq1818
Length=636242
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || ||||| || || || ||| | || || || || || ||||| ||
Sbjct 433227 ATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCCTCG 433168
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || || | || || || ||||| || || ||||| || || || |||||
Sbjct 433167 GATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAG 433108
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | | || | || ||||| || ||||||| | || | || || ||||||
Sbjct 433107 CAGAGACTGATCTTTGCTGGCAAGTAACTGGAAGATGGACGCACTTTGTCTGACTACAAC 433048
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
|||||||||||||| || | ||| | || ||| | | || |||||
Sbjct 433047 ATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 433001
>seq293
Length=1771812
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || |||||||| | || ||| | || ||||| || | ||||| ||
Sbjct 533874 ATGCAGATTTTCGTGAAAACTCTTATGGGGAAGACCATCACTCTCGAGGCTGAACCCTCG 533933
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || || | || || || ||||| || || ||||| || || || |||||
Sbjct 533934 GATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAG 533993
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | || || | || ||||| ||| ||||||| | || | || || ||||||
Sbjct 533994 CAGAGATTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTCTGTCTGACTACAAC 534053
Query 27168 ATTCAAAAGGAGTCGAC 27184
| |||||||||||| ||
Sbjct 534054 ACTCAAAAGGAGTCCAC 534070
>seq1
Length=12736304
Score = 86.0 bits (94), Expect = 5e-12
Identities = 138/197 (70%), Gaps = 1/197 (1%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || ||||| || || || ||| | || || || || || ||||| ||
Sbjct 12236886 ATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCCTCG 12236827
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || || | || || || ||||| || || ||||| || || || |||||
Sbjct 12236826 GATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCC-GATCAG 12236768
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | | || | || ||||| ||| ||||||| | || | || || ||||||
Sbjct 12236767 CAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTTTGTCTGACTACAAC 12236708
Query 27168 ATTCAAAAGGAGTCGAC 27184
|||||||||||||| ||
Sbjct 12236707 ATTCAAAAGGAGTCTAC 12236691
>seq9145
Length=4041
Score = 82.4 bits (90), Expect = 7e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || ||||| || || || ||| | || ||||| || || ||||| ||
Sbjct 497 ATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACCCTCA 438
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || || | | || || ||||| | || ||||| || || || |||||
Sbjct 437 GATACAATAGAAAATATAAAGGCCAAGATTCAGAATAAGGAAGGAATTCCTCCTGATCAG 378
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | | || | || ||||| ||| ||||||| | || | || || ||||||
Sbjct 377 CAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 318
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200
|||||||||| ||| || | ||| | || |||
Sbjct 317 ATTCAAAAGGCGTCCACTCTTCATCTTGTGTTG 285
>seq2520
Length=369870
Score = 82.4 bits (90), Expect = 7e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || ||||| || || || ||| | || ||||| || || ||||| ||
Sbjct 183991 ATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACCCTCA 184050
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || || | | || || ||||| | || ||||| || || || |||||
Sbjct 184051 GATACAATAGAAAATATAAAGGCCAAGATTCAGAATAAGGAAGGAATTCCTCCTGATCAG 184110
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | | || | || ||||| ||| ||||||| | || | || || ||||||
Sbjct 184111 CAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 184170
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200
|||||||||| ||| || | ||| | || |||
Sbjct 184171 ATTCAAAAGGCGTCCACTCTTCATCTTGTGTTG 184203
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434827550982720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |