Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq54 168 6e-37 seq1682 147 2e-30 seq2484 116 3e-21 >seq54 Length=3562170 Score = 168 bits (186), Expect = 6e-37 Identities = 134/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| |||||||| ||||| || ||||||||||| ||||| || | ||| Sbjct 3279531 TGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGCACACCCAGGCCC 3279590 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||| ||||| | || || ||||| ||||||||||| || ||| | |||||||| ||| Sbjct 3279591 ATGTCCCCCGACCTCTGGTACAGCTGACAGGACAGCTCGCCGTTCACCACGTAGAACTGG 3279650 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| |||||||| ||||| ||||||||||| ||||| Sbjct 3279651 CAGAGGGCATGGCACGGAGGGAGGGCCATCAGAGGAAGATC 3279691 Score = 168 bits (186), Expect = 6e-37 Identities = 134/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| ||||||||||| ||||| |||||||| |||||||||| |||||||| | ||| Sbjct 3279691 GATCTTCCTCTGATGGCCCTCCCTCCGTGCCATGCCCTCTGCCAGTTCTACGTGGTGAAC 3279632 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||||||||| ||||| || || | ||||| |||||||| | || ||||| ||| Sbjct 3279631 GGCGAGCTGTCCTGTCAGCTGTACCAGAGGTCGGGGGACATGGGCCTGGGTGTGCCCTTC 3279572 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 |||||||| || ||||| |||||||| ||||||||||| || Sbjct 3279571 AACATTGCCAGCTACGCCCTGCTCACCTACATGATCGCACA 3279531 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| || |||||||| || || || || ||||| || || ||||| || Sbjct 3282062 TATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCCTCTTCT 3282121 Query 6959 CGAGATGG-GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 | | ||| ||| ||| | |||||| |||||||||||||| | || |||||||| || Sbjct 3282122 CT-GTTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGAGACCCATTGGCATCCCAGATTTT 3282180 Query 7018 CACCCCCCGGGACGAGAGCTCCTTGGTGTTCGT 7050 ||| ||| || || || ||||| | ||| || Sbjct 3282181 CACTCCCTTTGAAGACAGTTCCTTAGCGTTTGT 3282213 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 34295 ACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGA 34354 || ||| | ||||| || || || ||| ||||| |||||||| || | ||||||||| Sbjct 3282213 ACAAACGCTAAGGAACTGTCTTCAAAGGGAGTGAAAATCTGGGATGCCAATGGGTCTCGA 3282154 Query 34355 GACTTTCTGGACAAGCGGGGGTTC-CCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTA 34413 ||||| |||||| | ||| ||| ||| | | || ||||| || || ||||| || || Sbjct 3282153 GACTTCTTGGACAGCCTGGGATTCTCCAAC-AGAGAAGAGGGGGATTTAGGCCCAGTTTA 3282095 Query 34414 CGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 || || |||||||| || |||||||| || || Sbjct 3282094 TGGCTTTCAGTGGAGGCATTTTGGGGCAGAATA 3282062 >seq1682 Length=602507 Score = 147 bits (162), Expect = 2e-30 Identities = 462/712 (65%), Gaps = 24/712 (3%) Strand=Plus/Plus Query 6433 GTACCCTTCCAACACGAAGTCCTCGCTCCTAAAGTCATCGATTGAGGTGACGGCTCGAAT 6492 |||||||| | | ||||| || | | ||||||| ||||| || | ||| Sbjct 467856 GTACCCTTGGATCTGAAAGTCTTCAGCCTTGAAGTCATGGATTGTCTCAACTTTTTGAAG 467915 Query 6493 AATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGAT 6552 |||||||||| |||| || | || ||||| || ||||| || || || || Sbjct 467916 GATTTTGAGCTTCAGGAAAGGCCTTGGTTCTCGCTGAAGCTGCATTTTCAGAGATTCAAT 467975 Query 6553 GTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCC 6612 ||| |||||||| ||||| ||||| | || ||||| || | | || || | | || Sbjct 467976 GTGATTCAGGTAAATATGTGCATCTTCAAA-GTATGTACTAAGTTGCCTGGCTTCCAGCC 468034 Query 6613 CACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGC----- 6667 || || ||||||| ||| |||||||| ||| | || |||||||| ||| Sbjct 468035 TGTGATGTGTGCGATCACGTAGGTGAGCAGCGCGAGGCGGGCCATGTTGAAGGGCCATTG 468094 Query 6668 ----------ACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTC 6717 || | || ||||||||||| | | | | ||||||||||||||||| Sbjct 468095 AGGGCAAGAGACAGCCAAGCCCATGTCTCCTGCCCTCCGGTCCAGCTGGCAGGACAGCTC 468154 Query 6718 CCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAG 6777 ||| || | ||| ||| ||||| |||| ||||| | || || |||| ||| | || Sbjct 468155 ACCAGTCACCACGGAGATCTGGCAAAGGGCATGGCAGAGAGGTAGGGCCAGGAGACGAAG 468214 Query 6778 ATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCA-AGG 6836 | || || ||||| | ||| | ||| |||||||| | ||||| | |||| | Sbjct 468215 TGCTTTTGGATTCCAACCATACAGGATGATTCTTCTGTCCT-TGGGTTTGGTTTCAGTTG 468273 Query 6837 TGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCC 6896 || | | ||| | ||| | ||||| |||| || || ||||| || | || | | Sbjct 468274 TGCCAAACACCTTTTGCGGTTGGTCTACTCCTTGACCTGAATAATCTGAATCTTTGTCTT 468333 Query 6897 GATACTCCGCCCCAAAGTG--TCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTC 6954 | || ||||| || || ||||||||| | || || || || || || || || || Sbjct 468334 TGAATTCTGCCCCCAAATGCCTCTCCACTGAGAGCCATAAACTGGACCTAAATCCCCTTC 468393 Query 6955 CTCCCGAGATGG-GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGA 7013 || | ||| ||||||| | |||| ||||||| || | | || ||||||| Sbjct 468394 TTC---TGTTGGAGAACCCCAGACTGTCTGAGAAGTCTCAGGAGGCATTGGCATCCCAGA 468450 Query 7014 TCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCA 7073 | |||| ||| ||| | || | || | ||| | | ||| | | ||||||| || Sbjct 468451 TTGTCACTCCCTTGGAAGGCAGTTTCTCAGCGTTTTTAGATCCCTTGATAAACCACAACA 468510 Query 7074 GCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAA 7125 |||||| | || ||||| ||| | ||| | |||| |||| ||| ||||| Sbjct 468511 ACTCCTCCAAAACACCCTTTCAGAATTCACATGTCGTTGTCAACAGAGGAAA 468562 Score = 147 bits (162), Expect = 2e-30 Identities = 462/712 (65%), Gaps = 24/712 (3%) Strand=Plus/Minus Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279 ||||| ||| |||| |||| | ||| | ||| ||||| || | |||||| || ||||| Sbjct 468562 TTTCCTCTGTTGACAACGACATGTGAATTCTGAAAGGGTGTTTTGGAGGAGTTGTTGTGG 468503 Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGAC 34339 || | | ||| | | ||| | || | || | ||| ||| |||| |||||||| Sbjct 468502 TTTATCAAGGGATCTAAAAACGCTGAGAAACTGCCTTCCAAGGGAGTGACAATCTGGGAT 468443 Query 34340 GCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTC-CCATCTCGGGAGGAGGGCGA 34398 || | | || ||||||| |||| | ||||||| ||| | || || || || Sbjct 468442 GCCAATGCCTCCTGAGACTTCTCAGACAGTCTGGGGTTCTCCAACA---GAAGAAGGGGA 468386 Query 34399 CTTGGGCCCGGTCTACGGGTTCCAGTGGAGA--CACTTTGGGGCGGAGTATCGGGGGAGC 34456 || || || || || || | ||||||||| || || ||||| || | | | Sbjct 468385 TTTAGGTCCAGTTTATGGCTCTCAGTGGAGAGGCATTTGGGGGCAGAATTCAAAGACAAA 468326 Query 34457 GAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCT-TGAA 34515 || | || ||||| || || |||| ||||| | ||| | ||| | | ||| |||| Sbjct 468325 GATTCAGATTATTCAGGTCAAGGAGTAGACCAACCGCAAAAGGTGTTTGGCACAACTGAA 468266 Query 34516 GCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCT 34575 | ||||| | |||||||| ||| | ||| | ||||| || || | || | ||| Sbjct 468265 ACCAAACCCA-AGGACAGAAGAATCATCCTGTATGGTTGGAATCCAAAAGCACTTCGTCT 468207 Query 34576 GATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTC 34635 |||| || || | ||||| |||| ||||| ||| ||| | || ||| |||||||| Sbjct 468206 CCTGGCCCTACCTCTCTGCCATGCCCTTTGCCAGATCTCCGTGGTGACTGGTGAGCTGTC 468147 Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGT---------------GCC 34680 ||||||||| | | | | ||||||||||| || | || ||| Sbjct 468146 CTGCCAGCTGGACCGGAGGGCAGGAGACATGGGCTTGGCTGTCTCTTGCCCTCAATGGCC 468087 Query 34681 GTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGT 34740 |||||||| || | ||| |||||||| ||| ||||||| || || || | | Sbjct 468086 CTTCAACATGGCCCGCCTCGCGCTGCTCACCTACGTGATCGCACACATCACAGGCTGGAA 468027 Query 34741 TCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCG 34800 || || | | || ||||| || | ||||| ||||| |||||||| ||||| || Sbjct 468026 GCCAGGCAACTTAGTACATAC-TTTGAAGATGCACATATTTACCTGAATCACATTGAATC 467968 Query 34801 GCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTATTCGAGC 34860 || || ||||| || ||||| || | || |||| |||||||||| ||| | Sbjct 467967 TCTGAAAATGCAGCTTCAGCGAGAACCAAGGCCTTTCCTGAAGCTCAAAATCCTTCAAAA 467908 Query 34861 CGTCACCTCAATCGATGACTTTAGGAGCGAGGACTTCGTGTTGGAAGGGTAC 34912 || ||||| ||||||| | | || ||||| | | |||||||| Sbjct 467907 AGTTGAGACAATCCATGACTTCAAGGCTGAAGACTTTCAGATCCAAGGGTAC 467856 >seq2484 Length=411614 Score = 116 bits (128), Expect = 3e-21 Identities = 197/284 (69%), Gaps = 1/284 (0%) Strand=Plus/Plus Query 6543 GCCGCTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAG 6602 || |||||||||| |||||||| ||||| ||||| ||||| ||| | | | | | Sbjct 95627 GCAGCTCGATGTGATTCAGGTAAATATGTGCATCTCCCAAAGTAATTATGAAGTTAGCTG 95686 Query 6603 GAACCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAA-TGTTG 6661 | || || || || | || |||| |||||||| || || ||| || || Sbjct 95687 GCTTCAGGCCTGTGATGTGTGAGACTGTGTAGGTGAGCAGGGCCTACACAGCTGGTGATG 95746 Query 6662 AACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCA 6721 || ||||| || | |||||| ||| || | || | | ||||||||||||||| ||| Sbjct 95747 AAGGGCACACCCAGGCCCATGGCTCGTGACCTGTGGCAAACCTGGCAGGACAGCTCACCA 95806 Query 6722 TTCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCC 6781 ||| | | ||||| |||| |||| |||| || || || | || ||||| ||| || Sbjct 95807 TTCACCGCATAGAACCGGCACAGGGCGTGGTGTGGAGGCAGGGTCAGGAGAGGAAGAGCC 95866 Query 6782 TTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTT 6825 || || ||||| | |||| | ||| ||||||||| ||||||| Sbjct 95867 TTTGGATTCCAACCACACAGGATGATTCTTCTGTCACCAGGGTT 95910 Score = 116 bits (128), Expect = 3e-21 Identities = 197/284 (69%), Gaps = 1/284 (0%) Strand=Plus/Minus Query 34520 AACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATG 34579 ||||||| ||||||||| ||| | |||| | ||||| || |||| ||| ||||| || Sbjct 95910 AACCCTGGTGACAGAAGAATCATCCTGTGTGGTTGGAATCCAAAGGCTCTTCCTCTCCTG 95851 Query 34580 GCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGC 34639 | || || || |||| |||| |||| ||||| | | |||||| |||||||||||| Sbjct 95850 ACCCTGCCTCCACACCACGCCCTGTGCCGGTTCTATGCGGTGAATGGTGAGCTGTCCTGC 95791 Query 34640 CAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACA-TTGCTAGTTA 34698 ||| | | || | || ||| |||||| | || ||||| |||| || ||| || Sbjct 95790 CAGGTTTGCCACAGGTCACGAGCCATGGGCCTGGGTGTGCCCTTCATCACCAGCTGTGTA 95731 Query 34699 CGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCA 34758 || |||||||| |||| || | || || || || || | | | | Sbjct 95730 GGCCCTGCTCACCTACACAGTCTCACACATCACAGGCCTGAAGCCAGCTAACTTCATAAT 95671 Query 34759 TACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGC 34802 ||| ||||| ||||| ||||| |||||||| |||||||||| || Sbjct 95670 TACTTTGGGAGATGCACATATTTACCTGAATCACATCGAGCTGC 95627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448168763587920