Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq54 168 6e-37
seq1682 147 2e-30
seq2484 116 3e-21
>seq54
Length=3562170
Score = 168 bits (186), Expect = 6e-37
Identities = 134/161 (83%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679
|| ||||||||||| |||||||| ||||| || ||||||||||| ||||| || | |||
Sbjct 3279531 TGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGCACACCCAGGCCC 3279590
Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739
||||| ||||| | || || ||||| ||||||||||| || ||| | |||||||| |||
Sbjct 3279591 ATGTCCCCCGACCTCTGGTACAGCTGACAGGACAGCTCGCCGTTCACCACGTAGAACTGG 3279650
Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780
||||||| |||||||| ||||| ||||||||||| |||||
Sbjct 3279651 CAGAGGGCATGGCACGGAGGGAGGGCCATCAGAGGAAGATC 3279691
Score = 168 bits (186), Expect = 6e-37
Identities = 134/161 (83%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624
||||| ||||||||||| ||||| |||||||| |||||||||| |||||||| | |||
Sbjct 3279691 GATCTTCCTCTGATGGCCCTCCCTCCGTGCCATGCCCTCTGCCAGTTCTACGTGGTGAAC 3279632
Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684
|| ||||||||||| ||||| || || | ||||| |||||||| | || ||||| |||
Sbjct 3279631 GGCGAGCTGTCCTGTCAGCTGTACCAGAGGTCGGGGGACATGGGCCTGGGTGTGCCCTTC 3279572
Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725
|||||||| || ||||| |||||||| ||||||||||| ||
Sbjct 3279571 AACATTGCCAGCTACGCCCTGCTCACCTACATGATCGCACA 3279531
Score = 93.3 bits (102), Expect = 4e-14
Identities = 114/153 (75%), Gaps = 2/153 (1%)
Strand=Plus/Plus
Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958
|| || |||||||| || |||||||| || || || || ||||| || || ||||| ||
Sbjct 3282062 TATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCCTCTTCT 3282121
Query 6959 CGAGATGG-GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017
| | ||| ||| ||| | |||||| |||||||||||||| | || |||||||| ||
Sbjct 3282122 CT-GTTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGAGACCCATTGGCATCCCAGATTTT 3282180
Query 7018 CACCCCCCGGGACGAGAGCTCCTTGGTGTTCGT 7050
||| ||| || || || ||||| | ||| ||
Sbjct 3282181 CACTCCCTTTGAAGACAGTTCCTTAGCGTTTGT 3282213
Score = 93.3 bits (102), Expect = 4e-14
Identities = 114/153 (75%), Gaps = 2/153 (1%)
Strand=Plus/Minus
Query 34295 ACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGA 34354
|| ||| | ||||| || || || ||| ||||| |||||||| || | |||||||||
Sbjct 3282213 ACAAACGCTAAGGAACTGTCTTCAAAGGGAGTGAAAATCTGGGATGCCAATGGGTCTCGA 3282154
Query 34355 GACTTTCTGGACAAGCGGGGGTTC-CCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTA 34413
||||| |||||| | ||| ||| ||| | | || ||||| || || ||||| || ||
Sbjct 3282153 GACTTCTTGGACAGCCTGGGATTCTCCAAC-AGAGAAGAGGGGGATTTAGGCCCAGTTTA 3282095
Query 34414 CGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446
|| || |||||||| || |||||||| || ||
Sbjct 3282094 TGGCTTTCAGTGGAGGCATTTTGGGGCAGAATA 3282062
>seq1682
Length=602507
Score = 147 bits (162), Expect = 2e-30
Identities = 462/712 (65%), Gaps = 24/712 (3%)
Strand=Plus/Plus
Query 6433 GTACCCTTCCAACACGAAGTCCTCGCTCCTAAAGTCATCGATTGAGGTGACGGCTCGAAT 6492
|||||||| | | ||||| || | | ||||||| ||||| || | |||
Sbjct 467856 GTACCCTTGGATCTGAAAGTCTTCAGCCTTGAAGTCATGGATTGTCTCAACTTTTTGAAG 467915
Query 6493 AATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGAT 6552
|||||||||| |||| || | || ||||| || ||||| || || || ||
Sbjct 467916 GATTTTGAGCTTCAGGAAAGGCCTTGGTTCTCGCTGAAGCTGCATTTTCAGAGATTCAAT 467975
Query 6553 GTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCC 6612
||| |||||||| ||||| ||||| | || ||||| || | | || || | | ||
Sbjct 467976 GTGATTCAGGTAAATATGTGCATCTTCAAA-GTATGTACTAAGTTGCCTGGCTTCCAGCC 468034
Query 6613 CACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGC----- 6667
|| || ||||||| ||| |||||||| ||| | || |||||||| |||
Sbjct 468035 TGTGATGTGTGCGATCACGTAGGTGAGCAGCGCGAGGCGGGCCATGTTGAAGGGCCATTG 468094
Query 6668 ----------ACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTC 6717
|| | || ||||||||||| | | | | |||||||||||||||||
Sbjct 468095 AGGGCAAGAGACAGCCAAGCCCATGTCTCCTGCCCTCCGGTCCAGCTGGCAGGACAGCTC 468154
Query 6718 CCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAG 6777
||| || | ||| ||| ||||| |||| ||||| | || || |||| ||| | ||
Sbjct 468155 ACCAGTCACCACGGAGATCTGGCAAAGGGCATGGCAGAGAGGTAGGGCCAGGAGACGAAG 468214
Query 6778 ATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCA-AGG 6836
| || || ||||| | ||| | ||| |||||||| | ||||| | |||| |
Sbjct 468215 TGCTTTTGGATTCCAACCATACAGGATGATTCTTCTGTCCT-TGGGTTTGGTTTCAGTTG 468273
Query 6837 TGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCC 6896
|| | | ||| | ||| | ||||| |||| || || ||||| || | || | |
Sbjct 468274 TGCCAAACACCTTTTGCGGTTGGTCTACTCCTTGACCTGAATAATCTGAATCTTTGTCTT 468333
Query 6897 GATACTCCGCCCCAAAGTG--TCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTC 6954
| || ||||| || || ||||||||| | || || || || || || || || ||
Sbjct 468334 TGAATTCTGCCCCCAAATGCCTCTCCACTGAGAGCCATAAACTGGACCTAAATCCCCTTC 468393
Query 6955 CTCCCGAGATGG-GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGA 7013
|| | ||| ||||||| | |||| ||||||| || | | || |||||||
Sbjct 468394 TTC---TGTTGGAGAACCCCAGACTGTCTGAGAAGTCTCAGGAGGCATTGGCATCCCAGA 468450
Query 7014 TCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCA 7073
| |||| ||| ||| | || | || | ||| | | ||| | | ||||||| ||
Sbjct 468451 TTGTCACTCCCTTGGAAGGCAGTTTCTCAGCGTTTTTAGATCCCTTGATAAACCACAACA 468510
Query 7074 GCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAA 7125
|||||| | || ||||| ||| | ||| | |||| |||| ||| |||||
Sbjct 468511 ACTCCTCCAAAACACCCTTTCAGAATTCACATGTCGTTGTCAACAGAGGAAA 468562
Score = 147 bits (162), Expect = 2e-30
Identities = 462/712 (65%), Gaps = 24/712 (3%)
Strand=Plus/Minus
Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279
||||| ||| |||| |||| | ||| | ||| ||||| || | |||||| || |||||
Sbjct 468562 TTTCCTCTGTTGACAACGACATGTGAATTCTGAAAGGGTGTTTTGGAGGAGTTGTTGTGG 468503
Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGAC 34339
|| | | ||| | | ||| | || | || | ||| ||| |||| ||||||||
Sbjct 468502 TTTATCAAGGGATCTAAAAACGCTGAGAAACTGCCTTCCAAGGGAGTGACAATCTGGGAT 468443
Query 34340 GCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTC-CCATCTCGGGAGGAGGGCGA 34398
|| | | || ||||||| |||| | ||||||| ||| | || || || ||
Sbjct 468442 GCCAATGCCTCCTGAGACTTCTCAGACAGTCTGGGGTTCTCCAACA---GAAGAAGGGGA 468386
Query 34399 CTTGGGCCCGGTCTACGGGTTCCAGTGGAGA--CACTTTGGGGCGGAGTATCGGGGGAGC 34456
|| || || || || || | ||||||||| || || ||||| || | | |
Sbjct 468385 TTTAGGTCCAGTTTATGGCTCTCAGTGGAGAGGCATTTGGGGGCAGAATTCAAAGACAAA 468326
Query 34457 GAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCT-TGAA 34515
|| | || ||||| || || |||| ||||| | ||| | ||| | | ||| ||||
Sbjct 468325 GATTCAGATTATTCAGGTCAAGGAGTAGACCAACCGCAAAAGGTGTTTGGCACAACTGAA 468266
Query 34516 GCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCT 34575
| ||||| | |||||||| ||| | ||| | ||||| || || | || | |||
Sbjct 468265 ACCAAACCCA-AGGACAGAAGAATCATCCTGTATGGTTGGAATCCAAAAGCACTTCGTCT 468207
Query 34576 GATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTC 34635
|||| || || | ||||| |||| ||||| ||| ||| | || ||| ||||||||
Sbjct 468206 CCTGGCCCTACCTCTCTGCCATGCCCTTTGCCAGATCTCCGTGGTGACTGGTGAGCTGTC 468147
Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGT---------------GCC 34680
||||||||| | | | | ||||||||||| || | || |||
Sbjct 468146 CTGCCAGCTGGACCGGAGGGCAGGAGACATGGGCTTGGCTGTCTCTTGCCCTCAATGGCC 468087
Query 34681 GTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGT 34740
|||||||| || | ||| |||||||| ||| ||||||| || || || | |
Sbjct 468086 CTTCAACATGGCCCGCCTCGCGCTGCTCACCTACGTGATCGCACACATCACAGGCTGGAA 468027
Query 34741 TCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCG 34800
|| || | | || ||||| || | ||||| ||||| |||||||| ||||| ||
Sbjct 468026 GCCAGGCAACTTAGTACATAC-TTTGAAGATGCACATATTTACCTGAATCACATTGAATC 467968
Query 34801 GCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTATTCGAGC 34860
|| || ||||| || ||||| || | || |||| |||||||||| ||| |
Sbjct 467967 TCTGAAAATGCAGCTTCAGCGAGAACCAAGGCCTTTCCTGAAGCTCAAAATCCTTCAAAA 467908
Query 34861 CGTCACCTCAATCGATGACTTTAGGAGCGAGGACTTCGTGTTGGAAGGGTAC 34912
|| ||||| ||||||| | | || ||||| | | ||||||||
Sbjct 467907 AGTTGAGACAATCCATGACTTCAAGGCTGAAGACTTTCAGATCCAAGGGTAC 467856
>seq2484
Length=411614
Score = 116 bits (128), Expect = 3e-21
Identities = 197/284 (69%), Gaps = 1/284 (0%)
Strand=Plus/Plus
Query 6543 GCCGCTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAG 6602
|| |||||||||| |||||||| ||||| ||||| ||||| ||| | | | | |
Sbjct 95627 GCAGCTCGATGTGATTCAGGTAAATATGTGCATCTCCCAAAGTAATTATGAAGTTAGCTG 95686
Query 6603 GAACCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAA-TGTTG 6661
| || || || || | || |||| |||||||| || || ||| || ||
Sbjct 95687 GCTTCAGGCCTGTGATGTGTGAGACTGTGTAGGTGAGCAGGGCCTACACAGCTGGTGATG 95746
Query 6662 AACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCA 6721
|| ||||| || | |||||| ||| || | || | | ||||||||||||||| |||
Sbjct 95747 AAGGGCACACCCAGGCCCATGGCTCGTGACCTGTGGCAAACCTGGCAGGACAGCTCACCA 95806
Query 6722 TTCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCC 6781
||| | | ||||| |||| |||| |||| || || || | || ||||| ||| ||
Sbjct 95807 TTCACCGCATAGAACCGGCACAGGGCGTGGTGTGGAGGCAGGGTCAGGAGAGGAAGAGCC 95866
Query 6782 TTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTT 6825
|| || ||||| | |||| | ||| ||||||||| |||||||
Sbjct 95867 TTTGGATTCCAACCACACAGGATGATTCTTCTGTCACCAGGGTT 95910
Score = 116 bits (128), Expect = 3e-21
Identities = 197/284 (69%), Gaps = 1/284 (0%)
Strand=Plus/Minus
Query 34520 AACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATG 34579
||||||| ||||||||| ||| | |||| | ||||| || |||| ||| ||||| ||
Sbjct 95910 AACCCTGGTGACAGAAGAATCATCCTGTGTGGTTGGAATCCAAAGGCTCTTCCTCTCCTG 95851
Query 34580 GCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGC 34639
| || || || |||| |||| |||| ||||| | | |||||| ||||||||||||
Sbjct 95850 ACCCTGCCTCCACACCACGCCCTGTGCCGGTTCTATGCGGTGAATGGTGAGCTGTCCTGC 95791
Query 34640 CAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACA-TTGCTAGTTA 34698
||| | | || | || ||| |||||| | || ||||| |||| || ||| ||
Sbjct 95790 CAGGTTTGCCACAGGTCACGAGCCATGGGCCTGGGTGTGCCCTTCATCACCAGCTGTGTA 95731
Query 34699 CGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCA 34758
|| |||||||| |||| || | || || || || || | | | |
Sbjct 95730 GGCCCTGCTCACCTACACAGTCTCACACATCACAGGCCTGAAGCCAGCTAACTTCATAAT 95671
Query 34759 TACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGC 34802
||| ||||| ||||| ||||| |||||||| |||||||||| ||
Sbjct 95670 TACTTTGGGAGATGCACATATTTACCTGAATCACATCGAGCTGC 95627
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448168763587920
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