Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq4151 190 2e-43 seq33 172 5e-38 seq2048 113 4e-20 >seq4151 Length=150835 Score = 190 bits (210), Expect = 2e-43 Identities = 189/245 (77%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 1281 GAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACT 1340 ||||| | ||||| |||||||| ||| | || || |||||||||||||||| ||| Sbjct 65457 GAAGTCTTGATTGTGACATGGCAGAAAATCAAGGCTGTTAGCCCAGAAAACATGGTCACC 65516 Query 1341 TTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACT 1400 || || || |||| |||||||| || ||||| || || ||||| || || ||||| || Sbjct 65517 TTCAGCAAGAACCATGGGGTTGTGGTCCAGCCTGCCTATAAAGACAAGATAAACATCACC 65576 Query 1401 GAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGG 1460 |||| | ||| | ||| |||| || |||||||||||||| || |||| ||||||||| Sbjct 65577 CAGCTGGAACTCAAGAACTCAACCATTACCTTCTGGAACACCACCCTGGAGGATGAAGGG 65636 Query 1461 TGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTA 1520 || |||||||| | || || |||||||| ||||||||||| ||||||| || || || Sbjct 65637 TGTTACAAGTGCCTCTTCAATACTTTTGGTTCTGGGAAGATCTCAGGAACAGCCTGCCTC 65696 Query 1521 ACCCT 1525 | ||| Sbjct 65697 AGCCT 65701 >seq33 Length=4095547 Score = 172 bits (190), Expect = 5e-38 Identities = 369/544 (68%), Gaps = 17/544 (3%) Strand=Plus/Plus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| || ||||| || | || | |||||| | || || || | ||||| Sbjct 3117797 CTAAACTGCATCCTCGCTGTGTCCAAGAACAGGGGCATCAGCAAGAATGGGGACCTGCCG 3117856 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCTTCTTCCACTGAC 2259 ||||| | | | ||||| || || |||| | || |||||| | || ||| | || Sbjct 3117857 TGGCCCTCATTCAGGAATGAGTTCAAGTATTTCCGAAGAATGACCACATCCTCCTCAGAA 3117916 Query 2260 TTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGC 2319 ||||||||| | || |||||||| || ||||||||||| || ||||| || | Sbjct 3117917 GGTAAACAGAATTTGGTGATTATGGGTAGGAAGACATGGTTCTCTATTCCCGAGAAGAAT 3117976 Query 2320 AGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGT 2379 | ||||| || ||||||| || | || ||| ||| ||||| | ||||| || || Sbjct 3117977 CGACCTTTAAAGGACAGAATTGATTTAGTGCTC---AGAGACCTTGAGGAGCCCCCCCG- 3118032 Query 2380 GGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCAGAA 2439 || ||||| ||| |||| |||||| | ||| | || || ||| | | || ||||||| Sbjct 3118033 GGAGCTCATTTTCTTGCCAAAAGTCTGGATGATGC-CTTAAAAGTTTTTGAGCACCAGAA 3118091 Query 2440 TTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGC 2499 ||| | | | ||||| | | |||||||| | || | || ||||| ||| |||| | Sbjct 3118092 TTAGCAAATAAAGTGGACATGGTTTGGATAGTGGGAGTCAGTTCTGTTTATAAGGAAGCC 3118151 Query 2500 AT-TACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATG 2558 || ||||| | || | | || ||| | ||||||| | |||| |||||||| | Sbjct 3118152 ATGAACAAG-CCAGGCCACGTTAAACTATTTGTGACAAGGAATGTGCAGGAATTTGAAAG 3118210 Query 2559 TGATAC-ATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAG 2617 ||| || | || |||||||||||| | |||| || ||||| | |||| Sbjct 3118211 TGACACGTTTTTTTCCAGAAATTAATTTGGAGAAAT---AAAAACTT------CTCCCAG 3118261 Query 2618 GTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaa 2677 |||||| |||| || || || || | || |||| |||||||||||| ||| ||| | Sbjct 3118262 GTGTTCTTTCTGATGTCCAGGAGGAGGAAGGCATTAAATACAAATTTGAAGTATGTGAGA 3118321 Query 2678 aaaa 2681 | || Sbjct 3118322 AGAA 3118325 >seq2048 Length=496994 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | |||||||| ||||||||| | || || || ||||||||| Sbjct 367418 GTGGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATCGTGGCCTTCTTTGAG 367477 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 367478 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 367537 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || || ||||||||| || Sbjct 367538 ATCGCTCTGTGGATGACTGA 367557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414392385453004