Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_029255.1
Length=129563
Score E
Sequences producing significant alignments: (Bits) Value
seq4151 190 2e-43
seq33 172 5e-38
seq2048 113 4e-20
>seq4151
Length=150835
Score = 190 bits (210), Expect = 2e-43
Identities = 189/245 (77%), Gaps = 0/245 (0%)
Strand=Plus/Plus
Query 1281 GAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACT 1340
||||| | ||||| |||||||| ||| | || || |||||||||||||||| |||
Sbjct 65457 GAAGTCTTGATTGTGACATGGCAGAAAATCAAGGCTGTTAGCCCAGAAAACATGGTCACC 65516
Query 1341 TTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACT 1400
|| || || |||| |||||||| || ||||| || || ||||| || || ||||| ||
Sbjct 65517 TTCAGCAAGAACCATGGGGTTGTGGTCCAGCCTGCCTATAAAGACAAGATAAACATCACC 65576
Query 1401 GAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGG 1460
|||| | ||| | ||| |||| || |||||||||||||| || |||| |||||||||
Sbjct 65577 CAGCTGGAACTCAAGAACTCAACCATTACCTTCTGGAACACCACCCTGGAGGATGAAGGG 65636
Query 1461 TGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTA 1520
|| |||||||| | || || |||||||| ||||||||||| ||||||| || || ||
Sbjct 65637 TGTTACAAGTGCCTCTTCAATACTTTTGGTTCTGGGAAGATCTCAGGAACAGCCTGCCTC 65696
Query 1521 ACCCT 1525
| |||
Sbjct 65697 AGCCT 65701
>seq33
Length=4095547
Score = 172 bits (190), Expect = 5e-38
Identities = 369/544 (68%), Gaps = 17/544 (3%)
Strand=Plus/Plus
Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199
|||||||| || ||||| || | || | |||||| | || || || | |||||
Sbjct 3117797 CTAAACTGCATCCTCGCTGTGTCCAAGAACAGGGGCATCAGCAAGAATGGGGACCTGCCG 3117856
Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCTTCTTCCACTGAC 2259
||||| | | | ||||| || || |||| | || |||||| | || ||| | ||
Sbjct 3117857 TGGCCCTCATTCAGGAATGAGTTCAAGTATTTCCGAAGAATGACCACATCCTCCTCAGAA 3117916
Query 2260 TTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGC 2319
||||||||| | || |||||||| || ||||||||||| || ||||| || |
Sbjct 3117917 GGTAAACAGAATTTGGTGATTATGGGTAGGAAGACATGGTTCTCTATTCCCGAGAAGAAT 3117976
Query 2320 AGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGT 2379
| ||||| || ||||||| || | || ||| ||| ||||| | ||||| || ||
Sbjct 3117977 CGACCTTTAAAGGACAGAATTGATTTAGTGCTC---AGAGACCTTGAGGAGCCCCCCCG- 3118032
Query 2380 GGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCAGAA 2439
|| ||||| ||| |||| |||||| | ||| | || || ||| | | || |||||||
Sbjct 3118033 GGAGCTCATTTTCTTGCCAAAAGTCTGGATGATGC-CTTAAAAGTTTTTGAGCACCAGAA 3118091
Query 2440 TTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGC 2499
||| | | | ||||| | | |||||||| | || | || ||||| ||| |||| |
Sbjct 3118092 TTAGCAAATAAAGTGGACATGGTTTGGATAGTGGGAGTCAGTTCTGTTTATAAGGAAGCC 3118151
Query 2500 AT-TACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATG 2558
|| ||||| | || | | || ||| | ||||||| | |||| |||||||| |
Sbjct 3118152 ATGAACAAG-CCAGGCCACGTTAAACTATTTGTGACAAGGAATGTGCAGGAATTTGAAAG 3118210
Query 2559 TGATAC-ATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAG 2617
||| || | || |||||||||||| | |||| || ||||| | ||||
Sbjct 3118211 TGACACGTTTTTTTCCAGAAATTAATTTGGAGAAAT---AAAAACTT------CTCCCAG 3118261
Query 2618 GTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaa 2677
|||||| |||| || || || || | || |||| |||||||||||| ||| ||| |
Sbjct 3118262 GTGTTCTTTCTGATGTCCAGGAGGAGGAAGGCATTAAATACAAATTTGAAGTATGTGAGA 3118321
Query 2678 aaaa 2681
| ||
Sbjct 3118322 AGAA 3118325
>seq2048
Length=496994
Score = 113 bits (124), Expect = 4e-20
Identities = 109/140 (78%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304
|| || || ||||||||| | |||||||| ||||||||| | || || || |||||||||
Sbjct 367418 GTGGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATCGTGGCCTTCTTTGAG 367477
Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364
|| ||||| || ||||||||||| |||||||| | | || | |||| || ||||||
Sbjct 367478 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 367537
Query 3365 ATTGCCGCGTGGATGACAGA 3384
|| || ||||||||| ||
Sbjct 367538 ATCGCTCTGTGGATGACTGA 367557
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414392385453004
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |