Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq788 127 2e-24 seq203 100 2e-16 seq322 91.5 1e-13 >seq788 Length=1000743 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| || | || ||| | |||||| || || ||| |||||| || |||||||| || | Sbjct 444996 GCCACCCCGTAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGA 445055 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 || || || | || || ||||||||||||||||| | |||||||||||||| | || Sbjct 445056 CAGAGTACGGCCATCTTCCAGCTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGG 445115 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | || ||| ||||| |||||| ||||| || | | || || || | ||| || Sbjct 445116 GATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGAC 445175 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || | ||||| | || |||||||| || || |||||||| ||||||| Sbjct 445176 CTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATCT 445225 >seq203 Length=1941613 Score = 100 bits (110), Expect = 2e-16 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || ||| |||| | | |||||||| || | || || || | | || Sbjct 1855974 CACCAAGTGCAGGGTGGACTCTCT--GGATATTATAGTCTGACAGGGTACGGCCAGCTTC 1856031 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||||||||||||||| || |||||||||||||| | || | | ||| ||||| Sbjct 1856032 CAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGGATGTCCTCCTTGTCTTG 1856091 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 |||||| ||||| || | | || || || | ||| || || | ||||| | || Sbjct 1856092 GATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGTTCTT 1856151 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 |||||||| || || || ||||| ||||||| Sbjct 1856152 GCCCGTCAGGGTCTTCACGAAGATCTGCATCT 1856183 >seq322 Length=1513654 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || ||| |||||| || |||||||| || | || || | | || || Sbjct 277542 CACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACAGCCATCTTC 277483 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||||||||||||||| | |||| ||||||||| | || | || ||| | ||| Sbjct 277482 TAGCTGTTTGCCCGCAAAAGTCAGACACTGCTGGTCAGGCGGGATGCCCTCCTGGTCTTG 277423 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 |||||| ||||| || | || || || | ||| || | || ||||| | || Sbjct 277422 GATTTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCGACCT-CAGGGTGATGGTCTT 277364 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || || || || || |||||||| ||||||| Sbjct 277363 GCCTGTGAGGGTCTTCACAAAGATCTGCATCT 277332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429458116461143