Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq788 127 2e-24
seq203 100 2e-16
seq322 91.5 1e-13
>seq788
Length=1000743
Score = 127 bits (140), Expect = 2e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116
||| || | || ||| | |||||| || || ||| |||||| || |||||||| || |
Sbjct 444996 GCCACCCCGTAGGCGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGA 445055
Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176
|| || || | || || ||||||||||||||||| | |||||||||||||| | ||
Sbjct 445056 CAGAGTACGGCCATCTTCCAGCTGTTTGCCCGCAAAAACCAGACGCTGCTGGTCAGGCGG 445115
Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236
| || ||| ||||| |||||| ||||| || | | || || || | ||| ||
Sbjct 445116 GATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGAC 445175
Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286
|| | ||||| | || |||||||| || || |||||||| |||||||
Sbjct 445176 CTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATCT 445225
>seq203
Length=1941613
Score = 100 bits (110), Expect = 2e-16
Identities = 150/212 (71%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || || ||| |||| | | |||||||| || | || || || | | ||
Sbjct 1855974 CACCAAGTGCAGGGTGGACTCTCT--GGATATTATAGTCTGACAGGGTACGGCCAGCTTC 1856031
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||||||||||||||| || |||||||||||||| | || | | ||| |||||
Sbjct 1856032 CAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGCGGGATGTCCTCCTTGTCTTG 1856091
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
|||||| ||||| || | | || || || | ||| || || | ||||| | ||
Sbjct 1856092 GATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGTTCTT 1856151
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286
|||||||| || || || ||||| |||||||
Sbjct 1856152 GCCCGTCAGGGTCTTCACGAAGATCTGCATCT 1856183
>seq322
Length=1513654
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/212 (70%), Gaps = 1/212 (0%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || || ||| |||||| || |||||||| || | || || | | || ||
Sbjct 277542 CACCAAGTGCAGGGTGGACTCTTTCTGGATATTATAGTCTGACAGAGTACAGCCATCTTC 277483
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||||||||||||||| | |||| ||||||||| | || | || ||| | |||
Sbjct 277482 TAGCTGTTTGCCCGCAAAAGTCAGACACTGCTGGTCAGGCGGGATGCCCTCCTGGTCTTG 277423
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
|||||| ||||| || | || || || | ||| || | || ||||| | ||
Sbjct 277422 GATTTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCGACCT-CAGGGTGATGGTCTT 277364
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286
|| || || || || |||||||| |||||||
Sbjct 277363 GCCTGTGAGGGTCTTCACAAAGATCTGCATCT 277332
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429458116461143
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |