Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1818 132 3e-26 seq975 132 3e-26 seq1 132 3e-26 seq293 127 1e-24 seq9145 123 2e-23 seq2520 123 2e-23 seq371 107 1e-18 seq182 100 2e-16 seq788 98.7 7e-16 seq304 95.1 8e-15 seq541 91.5 1e-13 seq377 82.4 5e-11 >seq1818 Length=636242 Score = 132 bits (146), Expect = 3e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| |||||||| ||||| || || ||||| ||||| ||||| || Sbjct 433230 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 433171 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| |||| || ||| || || ||||| | || || ||| Sbjct 433170 TCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGAT 433111 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||| ||||| |||||||||| | ||||||||| || ||| Sbjct 433110 CAGCAGAGACTGATCTTTGCTGGCAAGTAACTGGAAGATGGACGCACTTTGTCTGACTAC 433051 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| ||||| || | ||| | || || || Sbjct 433050 AACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAG 433013 >seq975 Length=833997 Score = 132 bits (146), Expect = 3e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| |||||||| ||||| || || ||||| ||||| ||||| | Sbjct 558717 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCG 558658 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| |||| || ||| || || ||||| | || || ||| Sbjct 558657 TCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGAT 558598 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||| ||||| ||||||||||| | ||||||||| || ||| Sbjct 558597 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTTTGTCTGACTAC 558538 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| ||||| || | ||| | || || || Sbjct 558537 AACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAG 558500 >seq1 Length=12736304 Score = 132 bits (146), Expect = 3e-26 Identities = 150/200 (75%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| |||||||| ||||| || || ||||| ||||| ||||| || Sbjct 12236889 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 12236830 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| |||| || ||| || || ||||| | || || ||| Sbjct 12236829 TCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCC-GAT 12236771 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||| ||||| ||||||||||| | ||||||||| || ||| Sbjct 12236770 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTTTGTCTGACTAC 12236711 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| ||||| ||||| || Sbjct 12236710 AACATTCAAAAGGAGTCTAC 12236691 >seq293 Length=1771812 Score = 127 bits (140), Expect = 1e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| ||||| || | ||| || || ||||||||||| | ||| || Sbjct 533871 AAGATGCAGATTTTCGTGAAAACTCTTATGGGGAAGACCATCACTCTCGAGGCTGAACCC 533930 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| |||| || ||| || || ||||| | || || ||| Sbjct 533931 TCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGAT 533990 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | || || ||||| ||||| ||||||||||| | ||||||| | || ||| Sbjct 533991 CAGCAGAGATTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTCTGTCTGACTAC 534050 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 |||| ||||| |||||||| | ||| | || ||||| Sbjct 534051 AACACTCAAAAGGAGTCCACTCTTCATCTTGTGTTAAG 534088 >seq9145 Length=4041 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| |||||||| ||||| || || ||||||||||| ||||| || Sbjct 500 AAGATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACCC 441 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || | |||| |||| || ||| | || ||||| | || || ||| Sbjct 440 TCAGATACAATAGAAAATATAAAGGCCAAGATTCAGAATAAGGAAGGAATTCCTCCTGAT 381 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||| ||||| ||||||||||| | ||| ||||| || ||| Sbjct 380 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 321 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| | |||||| | ||| | || || || Sbjct 320 AACATTCAAAAGGCGTCCACTCTTCATCTTGTGTTGAG 283 >seq2520 Length=369870 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| |||||||| ||||| || || ||||||||||| ||||| || Sbjct 183988 AAGATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACCC 184047 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || | |||| |||| || ||| | || ||||| | || || ||| Sbjct 184048 TCAGATACAATAGAAAATATAAAGGCCAAGATTCAGAATAAGGAAGGAATTCCTCCTGAT 184107 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||| ||||| ||||||||||| | ||| ||||| || ||| Sbjct 184108 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 184167 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| | |||||| | ||| | || || || Sbjct 184168 AACATTCAAAAGGCGTCCACTCTTCATCTTGTGTTGAG 184205 >seq371 Length=1453275 Score = 107 bits (118), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| || |||||||| | ||| || || ||||||||||| ||||| ||| Sbjct 449567 AAGATGCAGATTTTTGTGAAAACCCTTATGGGGAAGACCATCACTCTCGAGGTTGAATCC 449626 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | | || || |||| |||| || || || || ||||| | || || ||| Sbjct 449627 TCAGGTACAGTAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 449686 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | ||||| | ||||| |||||||||||| || ||||| | || ||| Sbjct 449687 CAGCA--GACTGATATTCACTGGCAAGCAACTGGAAGACAGACAAACTTTGTGTGACTAC 449744 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 | ||| ||||| |||||||| | ||| | || || || Sbjct 449745 AGCATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAG 449782 >seq182 Length=1985155 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||| | |||||||| ||||| || || |||| || || | ||| || Sbjct 1379205 AAGATGCAGATTTTCCTGAAAACCCTTACGGGGAAGACCATCATCCTTGAGGCTGAACCC 1379146 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||| || | |||| || | || ||| || || ||||| | || || ||| Sbjct 1379145 TCGGGTACAATAGAAAATGTACAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGAT 1379086 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||| ||||| ||||||||||| | | ||||||| || ||| Sbjct 1379085 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGCACTTTGTCTGACTAC 1379026 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| ||||| || | ||| | || || || Sbjct 1379025 AACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAG 1378988 >seq788 Length=1000743 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| ||||| || || ||||| || || || || ||| Sbjct 445223 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 445164 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | |||| | ||||| || || | ||||| || || Sbjct 445163 GACACCATTGAGAATGTCAAAGCCAAAA-TCCAAGACAAGGAGGGCATCCCGCCTGACCA 445105 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | | ||||| |||||||| |||||||| | || ||| | || || || Sbjct 445104 GCAGCGTCTGGTTTTTGCGGGCAAACAGCTGGAAGATGGCCGTACTCTGTCAGACTATAA 445045 Query 23790 CATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 445044 TATCCAGAAAGAGTCCAC 445027 >seq304 Length=1579526 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| |||||||| || | || |||||||| || ||||| || Sbjct 417811 AAAATGCAGATTTTCGTGAAAACCCTTACCAAGTAGACTATCACTCTTGAGGTTGAACCC 417752 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||| || |||| |||| || ||| || || |||| | || | ||| Sbjct 417751 TCGGCTACAACAGAAAATGTAAAGGTCAAGATTCAGGATAAGGAAGAAATTCCTCGTGAT 417692 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGAT-TA 23786 || ||| | | || ||||| ||||| ||||||| ||| ||| | ||||| | | || || Sbjct 417691 CAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGGAGATGAATGTACTTT-GTCCATCTA 417633 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 |||||| ||||| |||||||| | ||| | || || || Sbjct 417632 CAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAG 417594 >seq541 Length=1170729 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| || ||||| || || || || ||||| || || || || || Sbjct 610735 AAAATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 610676 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | |||| | || || || || ||||| || | || || || Sbjct 610675 AGTGACACCATCGAAAACGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGAC 610616 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||| ||||| || |||||||| | |||||| | |||||| Sbjct 610615 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTAC 610556 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || |||||||| || Sbjct 610555 AACATCCAGAAAGAGTCAAC 610536 >seq377 Length=1354867 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| || ||||| || || || || ||| | || || || || || Sbjct 824632 AAAATGCAGATCTTCGTGAAGACCCTAACCGGCAAGACCATCCCCCTGGAGGTGGAGCCC 824573 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | |||| | || || || || ||||| || | || || || Sbjct 824572 AGTGACACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCATCCCCCCTGAC 824513 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||| ||||| || |||||||| | |||||| | ||||| Sbjct 824512 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTAT 824453 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || |||||||| || Sbjct 824452 AACATCCAGAAAGAGTCGAC 824433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337940759169188