Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq54 163 2e-35 >seq54 Length=3562170 Score = 163 bits (180), Expect = 2e-35 Identities = 135/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| || | ||||||||| ||||| |||||| Sbjct 3279519 AGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 3279578 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || ||||||||||| ||||||||||| ||||| || || ||||| |||| | Sbjct 3279579 ACACCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGACAGGACAGCTCGCCGTTCACC 3279638 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 ||||| ||||| || | ||||||||||||||| |||||||| ||| Sbjct 3279639 ACGTAGAACTGGCAGAGGGCATGGCACGGAGGGAGGGCCATCAGA 3279683 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 |||||||||||||| || || || || || || | || |||||||| |||| ||| Sbjct 3282074 AAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCCTCTTCTCTGTTGGAGAAT 3282133 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| ||||||| ||||||| || || ||||| |||||||| || || ||||| Sbjct 3282134 CCCAGGCTGTCCAAGAAGTCTCGAGACCCATTGGCATCCCAGATTTTCACTCCCTTTGAA 3282193 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || || || || | |||||| || || Sbjct 3282194 GACAGTTCCTTAGCGTTTGTAGATCC 3282219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406080478644946