Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq19 262 3e-65 seq3332 187 2e-42 seq878 89.7 4e-13 seq674 89.7 4e-13 >seq19 Length=4596781 Score = 262 bits (290), Expect = 3e-65 Identities = 583/866 (67%), Gaps = 19/866 (2%) Strand=Plus/Plus Query 4271 TACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAA 4330 ||||| |||||| ||||| || ||||| | |||||||| ||||| || ||||| Sbjct 3964831 TACTCTCTTTTCAAAGAAGTTCC-----CCTTCCAGTGAAATATTCTCCATGAAGTCAAA 3964885 Query 4331 CGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTAC 4390 ||||| | | || || || || | ||| | | | | |||||| || || Sbjct 3964886 TGGATTTTCTACTCTGAAAACCTTGCCAAAACCTAGCTCCAGCATAAGTCGGTCTGCCAC 3964945 Query 4391 AAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGC 4450 || || |||||||| |||| | ||| || || | ||| | ||||||| | | Sbjct 3964946 GAACTCAATATACTGCTTCATTAACGTGCAATTCATCCTAATGAGCTTCACAGGCAAGGT 3965005 Query 4451 GTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATC 4510 | || | ||| | || ||||| ||||| | | ||||| || || | | | | Sbjct 3965006 CTCCGTGAGGAACCCCTGCTCTATCCGAACGGCATTAATAATTATTTCCTTCACTCTCTG 3965065 Query 4511 TTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACC 4570 || || ||||| | || | | | |||| | || ||||| ||||| || ||||| Sbjct 3965066 CTTGGAAGGTTTGTGGACCAGTTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACC 3965125 Query 4571 TTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTT 4630 || ||||||||||| ||||| || ||||||| | | || ||||| | | | || || Sbjct 3965126 CTCATCTCTGCTAATAAGTTCATTGGAAAACG-TCAGCCAGGCATCAGGTCGCGTTTCTT 3965184 Query 4631 AAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGC 4690 ||||| ||||| | ||||| || ||||||||||| || ||||| || || ||||| | Sbjct 3965185 GAGCCAGAATATCGTCGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGTC 3965244 Query 4691 TACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAG 4749 || | || |||| | | ||| ||||||| | |||| | || ||||||| Sbjct 3965245 CACAACCCGTTCCCCGTAGGTAGC-CTCTTTGTCGCCAGTCCAATGCAAGGCCCAGT--- 3965300 Query 4750 CTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA---TAATTTACTTTTTTCAA 4806 || ||||| || || || ||||| | | ||||| || |||| |||| ||| Sbjct 3965301 CTGCCTTCTTTACACAAGGCATTGTCTGGAGGGCGTTGAAGAGAAATTCCCTTTCTTC-- 3965358 Query 4807 ATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTA 4866 | |||| || ||| |||| || || || || ||||| |||||||| || ||||| | Sbjct 3965359 -GGAATCTTTAACGTAACTGTCAATGAGGAGACTGTACATCTCAGAATGGATGTTTTCCA 3965417 Query 4867 TAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 | ||||| || || || || || || | |||||||| | |||||||| | | ||| | Sbjct 3965418 TGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAACC 3965477 Query 4927 TTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAG 4986 || || |||||||| |||||||| || ||||| | |||| || |||| ||| || | Sbjct 3965478 GCTCCACCAAGTTTTCATTTACTATGCCATCACTCGGCACAAAGAAAGCCAGAACGTGGG 3965537 Query 4987 ATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAAT 5046 ||| |||||| || |||||||| || || | ||| | | || || | | || Sbjct 3965538 ATAGAAAGTATCTCTCCTCAGGCTTCAGGGATTCCTGGTGCTGAATGTCCTTGGAAAGAT 3965597 Query 5047 CAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAG 5106 | || |||||| | |||||||| || || || ||||| | ||||| |||||||||| Sbjct 3965598 CCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTCATACATCTGCCAAATATCAA 3965657 Query 5107 GATACT-GAATCGGAAGTATGACAAA 5131 | |||| || ||||| |||||||| Sbjct 3965658 GGTACTCGACAGGGAAG-ATGACAAA 3965682 >seq3332 Length=249688 Score = 187 bits (206), Expect = 2e-42 Identities = 572/873 (66%), Gaps = 21/873 (2%) Strand=Plus/Minus Query 4273 CTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAACG 4332 ||| ||| || ||||| ||||| || ||||| | |||||||| ||||||| ||||| | Sbjct 148952 CTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCCATAAGGTCAAATG 148893 Query 4333 GATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAG-CTAC--AAGCAATCGGTCAGCTA 4389 |||| | | || || || | | ||| |||| ||| || ||| || | Sbjct 148892 GATTTTCTACTCTGGAAACCTTGCTAAAACCTAGTTTCTACCTAAG---TCAGTCTGCCA 148836 Query 4390 CAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCG 4449 ||||| |||||||| | || | |||||| || ||||| | |||| || | | Sbjct 148835 TGAATTCAATATACTGCTTTATTAACATGCAGTTCATCCCAATGAGCTTCACGGGCAAGG 148776 Query 4450 CGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTAT 4509 | | || | ||||| || ||||| | || || | | |||| || || | | | | Sbjct 148775 CCTGTGGGAGGAACTCCTGGTCTATCCTAACAGCATTGATAGTTATTTCCTTCACTCTCT 148716 Query 4510 CTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAAC 4569 | || ||||||| || | || | |||| | || ||||| | | || |||| Sbjct 148715 GCTCTGAAGGTTTATGGACCAGGTGTTTGAACATCAGGCAGGCAAAGTTATGGTGTAAAC 148656 Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAAC-GTTAATCCGGGCATTAAACCTCTCTTT 4628 | || ||||||||||| || || || |||||| || | || ||||| | | | || Sbjct 148655 CCTCATCTCTGCTAATAAGCTCATTGGAAAACCGTGAGGCCAGGCATCAGGCTGCATTTC 148596 Query 4629 TTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAAC 4688 || ||||| ||||| | ||| | || ||| ||||| | || ||||| ||| ||||| Sbjct 148595 TTGAGCCAGAATATCGACGCAGAAGAACCAAAAAAGGAGATTCCTTCCGTGGCAGCAAAG 148536 Query 4689 GCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTT 4747 | || | |||| | | ||| ||||||| || ||| || ||||| | Sbjct 148535 TCCACATCCCATTCCCCGTAGGTAGCCT-CTTTGTCCCCAACCCAACACAAGGCCCAATC 148477 Query 4748 AGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAA 4807 || || ||| | | || || ||||| | || | ||| || | | || | || Sbjct 148476 TGCCTTCTTCCTTCCACAAGGCATTGTCTCGATGGTGTTGAAGAGA--AATTCTGTCTCT 148419 Query 4808 TGGG--TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCT 4865 | || |||| |||||||||||| | || || ||| |||| |||||||| || ||||| Sbjct 148418 TTGGAATCTTTAATATAAGTGTCAGTGAGGAGACTACACATCTCAGAATGGATGTTTTCC 148359 Query 4866 ATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAAT 4925 || ||||| || || || || || || | |||||||| | |||||||| | | | | Sbjct 148358 ATGGCAATTTGGAAGCCATAGAAACAGCAGGCTTCTGTCATCTGAACTTCTTGGCCACAC 148299 Query 4926 CTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCA------AA 4979 | || || |||||||| |||||| | || |||| | ||||| || |||| | Sbjct 148298 CACTCCACCAAGTTTTCATTTACTGTGCCAACACTCACCGCAAAGAAAGCCAGAATGTGA 148239 Query 4980 ACATGAGATATAAAGTACTGT-TCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTT 5038 || || | |||||| | || | || |||||||| || || |||||| | | || || Sbjct 148238 ACGTGGGGTATAAAAT-CTCTCTCCTCAGGCTTCAGCGATTCCCAGTGTTGAATGTCCTT 148180 Query 5039 AGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCA 5098 | | || || |||||| | |||||||| || || || ||||| || |||| ||| Sbjct 148179 GGAAAGATTCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTACACATCTGCCA 148120 Query 5099 AATATCAGGATACTGAATCGGAAGTATGACAAA 5131 || ||| | |||| || || | |||||||| Sbjct 148119 AAGGTCATGGTACTTCATAGGGAAGATGACAAA 148087 >seq878 Length=898115 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || |||||||| | || ||||| | || | || || Sbjct 679152 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCTTG 679093 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| || ||||| || || ||||| || Sbjct 679092 AGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGCC 679033 Query 4692 AC 4693 || Sbjct 679032 AC 679031 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| |||||||||||| || || || || ||||| |||||||| || ||||| || ||| Sbjct 677125 TCTTTAATATAAGTGTCAATGAGGAGACTGTACATCTCAGAATGGATGTTTTCCATGGCA 677066 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || || || || | |||||||| | |||||||| Sbjct 677065 ATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 677022 >seq674 Length=1058379 Score = 89.7 bits (98), Expect = 4e-13 Identities = 98/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || || ||||| || || || || ||||||||||||||||| || || | Sbjct 552693 AAAATCTT---ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAATA 552637 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||| ||||| |||| || || | ||||| || |||||||| || | ||| || | Sbjct 552636 TGTGAGAGATAAAATACTTCTCATCCGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 552577 Query 5041 TTAAATCAAC 5050 ||| ||||| Sbjct 552576 ATAAGTCAAC 552567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426962624809763