Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq19 262 3e-65
seq3332 187 2e-42
seq878 89.7 4e-13
seq674 89.7 4e-13
>seq19
Length=4596781
Score = 262 bits (290), Expect = 3e-65
Identities = 583/866 (67%), Gaps = 19/866 (2%)
Strand=Plus/Plus
Query 4271 TACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAA 4330
||||| |||||| ||||| || ||||| | |||||||| ||||| || |||||
Sbjct 3964831 TACTCTCTTTTCAAAGAAGTTCC-----CCTTCCAGTGAAATATTCTCCATGAAGTCAAA 3964885
Query 4331 CGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTAC 4390
||||| | | || || || || | ||| | | | | |||||| || ||
Sbjct 3964886 TGGATTTTCTACTCTGAAAACCTTGCCAAAACCTAGCTCCAGCATAAGTCGGTCTGCCAC 3964945
Query 4391 AAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGC 4450
|| || |||||||| |||| | ||| || || | ||| | ||||||| | |
Sbjct 3964946 GAACTCAATATACTGCTTCATTAACGTGCAATTCATCCTAATGAGCTTCACAGGCAAGGT 3965005
Query 4451 GTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATC 4510
| || | ||| | || ||||| ||||| | | ||||| || || | | | |
Sbjct 3965006 CTCCGTGAGGAACCCCTGCTCTATCCGAACGGCATTAATAATTATTTCCTTCACTCTCTG 3965065
Query 4511 TTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACC 4570
|| || ||||| | || | | | |||| | || ||||| ||||| || |||||
Sbjct 3965066 CTTGGAAGGTTTGTGGACCAGTTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACC 3965125
Query 4571 TTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTT 4630
|| ||||||||||| ||||| || ||||||| | | || ||||| | | | || ||
Sbjct 3965126 CTCATCTCTGCTAATAAGTTCATTGGAAAACG-TCAGCCAGGCATCAGGTCGCGTTTCTT 3965184
Query 4631 AAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGC 4690
||||| ||||| | ||||| || ||||||||||| || ||||| || || ||||| |
Sbjct 3965185 GAGCCAGAATATCGTCGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAGTC 3965244
Query 4691 TACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAG 4749
|| | || |||| | | ||| ||||||| | |||| | || |||||||
Sbjct 3965245 CACAACCCGTTCCCCGTAGGTAGC-CTCTTTGTCGCCAGTCCAATGCAAGGCCCAGT--- 3965300
Query 4750 CTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA---TAATTTACTTTTTTCAA 4806
|| ||||| || || || ||||| | | ||||| || |||| |||| |||
Sbjct 3965301 CTGCCTTCTTTACACAAGGCATTGTCTGGAGGGCGTTGAAGAGAAATTCCCTTTCTTC-- 3965358
Query 4807 ATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTA 4866
| |||| || ||| |||| || || || || ||||| |||||||| || ||||| |
Sbjct 3965359 -GGAATCTTTAACGTAACTGTCAATGAGGAGACTGTACATCTCAGAATGGATGTTTTCCA 3965417
Query 4867 TAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926
| ||||| || || || || || || | |||||||| | |||||||| | | ||| |
Sbjct 3965418 TGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAACC 3965477
Query 4927 TTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAG 4986
|| || |||||||| |||||||| || ||||| | |||| || |||| ||| || |
Sbjct 3965478 GCTCCACCAAGTTTTCATTTACTATGCCATCACTCGGCACAAAGAAAGCCAGAACGTGGG 3965537
Query 4987 ATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAAT 5046
||| |||||| || |||||||| || || | ||| | | || || | | ||
Sbjct 3965538 ATAGAAAGTATCTCTCCTCAGGCTTCAGGGATTCCTGGTGCTGAATGTCCTTGGAAAGAT 3965597
Query 5047 CAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAG 5106
| || |||||| | |||||||| || || || ||||| | ||||| ||||||||||
Sbjct 3965598 CCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTCATACATCTGCCAAATATCAA 3965657
Query 5107 GATACT-GAATCGGAAGTATGACAAA 5131
| |||| || ||||| ||||||||
Sbjct 3965658 GGTACTCGACAGGGAAG-ATGACAAA 3965682
>seq3332
Length=249688
Score = 187 bits (206), Expect = 2e-42
Identities = 572/873 (66%), Gaps = 21/873 (2%)
Strand=Plus/Minus
Query 4273 CTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAACG 4332
||| ||| || ||||| ||||| || ||||| | |||||||| ||||||| ||||| |
Sbjct 148952 CTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTCCATAAGGTCAAATG 148893
Query 4333 GATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAG-CTAC--AAGCAATCGGTCAGCTA 4389
|||| | | || || || | | ||| |||| ||| || ||| || |
Sbjct 148892 GATTTTCTACTCTGGAAACCTTGCTAAAACCTAGTTTCTACCTAAG---TCAGTCTGCCA 148836
Query 4390 CAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCG 4449
||||| |||||||| | || | |||||| || ||||| | |||| || | |
Sbjct 148835 TGAATTCAATATACTGCTTTATTAACATGCAGTTCATCCCAATGAGCTTCACGGGCAAGG 148776
Query 4450 CGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTAT 4509
| | || | ||||| || ||||| | || || | | |||| || || | | | |
Sbjct 148775 CCTGTGGGAGGAACTCCTGGTCTATCCTAACAGCATTGATAGTTATTTCCTTCACTCTCT 148716
Query 4510 CTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAAC 4569
| || ||||||| || | || | |||| | || ||||| | | || ||||
Sbjct 148715 GCTCTGAAGGTTTATGGACCAGGTGTTTGAACATCAGGCAGGCAAAGTTATGGTGTAAAC 148656
Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAAC-GTTAATCCGGGCATTAAACCTCTCTTT 4628
| || ||||||||||| || || || |||||| || | || ||||| | | | ||
Sbjct 148655 CCTCATCTCTGCTAATAAGCTCATTGGAAAACCGTGAGGCCAGGCATCAGGCTGCATTTC 148596
Query 4629 TTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAAC 4688
|| ||||| ||||| | ||| | || ||| ||||| | || ||||| ||| |||||
Sbjct 148595 TTGAGCCAGAATATCGACGCAGAAGAACCAAAAAAGGAGATTCCTTCCGTGGCAGCAAAG 148536
Query 4689 GCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTT 4747
| || | |||| | | ||| ||||||| || ||| || ||||| |
Sbjct 148535 TCCACATCCCATTCCCCGTAGGTAGCCT-CTTTGTCCCCAACCCAACACAAGGCCCAATC 148477
Query 4748 AGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAA 4807
|| || ||| | | || || ||||| | || | ||| || | | || | ||
Sbjct 148476 TGCCTTCTTCCTTCCACAAGGCATTGTCTCGATGGTGTTGAAGAGA--AATTCTGTCTCT 148419
Query 4808 TGGG--TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCT 4865
| || |||| |||||||||||| | || || ||| |||| |||||||| || |||||
Sbjct 148418 TTGGAATCTTTAATATAAGTGTCAGTGAGGAGACTACACATCTCAGAATGGATGTTTTCC 148359
Query 4866 ATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAAT 4925
|| ||||| || || || || || || | |||||||| | |||||||| | | | |
Sbjct 148358 ATGGCAATTTGGAAGCCATAGAAACAGCAGGCTTCTGTCATCTGAACTTCTTGGCCACAC 148299
Query 4926 CTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCA------AA 4979
| || || |||||||| |||||| | || |||| | ||||| || |||| |
Sbjct 148298 CACTCCACCAAGTTTTCATTTACTGTGCCAACACTCACCGCAAAGAAAGCCAGAATGTGA 148239
Query 4980 ACATGAGATATAAAGTACTGT-TCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTT 5038
|| || | |||||| | || | || |||||||| || || |||||| | | || ||
Sbjct 148238 ACGTGGGGTATAAAAT-CTCTCTCCTCAGGCTTCAGCGATTCCCAGTGTTGAATGTCCTT 148180
Query 5039 AGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCA 5098
| | || || |||||| | |||||||| || || || ||||| || |||| |||
Sbjct 148179 GGAAAGATTCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTACACATCTGCCA 148120
Query 5099 AATATCAGGATACTGAATCGGAAGTATGACAAA 5131
|| ||| | |||| || || | ||||||||
Sbjct 148119 AAGGTCATGGTACTTCATAGGGAAGATGACAAA 148087
>seq878
Length=898115
Score = 89.7 bits (98), Expect = 4e-13
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631
|| ||||||||||| ||||| || |||||||| | || ||||| | || | || ||
Sbjct 679152 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCTTG 679093
Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691
||||| ||||| | ||||| || ||||||||||| || ||||| || || ||||| ||
Sbjct 679092 AGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGCC 679033
Query 4692 AC 4693
||
Sbjct 679032 AC 679031
Score = 84.2 bits (92), Expect = 2e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871
|||| |||||||||||| || || || || ||||| |||||||| || ||||| || |||
Sbjct 677125 TCTTTAATATAAGTGTCAATGAGGAGACTGTACATCTCAGAATGGATGTTTTCCATGGCA 677066
Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915
|| || || || || || || | |||||||| | ||||||||
Sbjct 677065 ATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 677022
>seq674
Length=1058379
Score = 89.7 bits (98), Expect = 4e-13
Identities = 98/130 (75%), Gaps = 3/130 (2%)
Strand=Plus/Minus
Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980
|||||||| || || ||||| || || || || ||||||||||||||||| || || |
Sbjct 552693 AAAATCTT---ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAATA 552637
Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040
||||| ||||| |||| || || | ||||| || |||||||| || | ||| || |
Sbjct 552636 TGTGAGAGATAAAATACTTCTCATCCGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 552577
Query 5041 TTAAATCAAC 5050
||| |||||
Sbjct 552576 ATAAGTCAAC 552567
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426962624809763
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |