Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq19 320 2e-82 seq3332 271 1e-67 seq348 129 8e-25 seq878 116 5e-21 seq674 96.9 5e-15 >seq19 Length=4596781 Score = 320 bits (354), Expect = 2e-82 Identities = 638/937 (68%), Gaps = 16/937 (2%) Strand=Plus/Plus Query 47791 TTCT-TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCT-TGAGACATAACTCCCAT 47848 |||| ||| |||||| |||| || | |||| ||| | || | ||||| |||||||| Sbjct 3964756 TTCTCTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTGTTGGATTTGACATCACTCCCAT 3964815 Query 47849 TTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 47908 | ||||| ||||| || | || || || || || ||||||| ||| ||||| Sbjct 3964816 CCTCTGATACTCACCTACTCTCTTTTCAAAGAAGTTCC-----CCTTCCAGTGAAATATT 3964870 Query 47909 TTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAAT 47968 ||||| || ||||||||||| || | | ||| || ||| |||| || || Sbjct 3964871 CTCCATGAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCCAAAACCTAGCTCCAGCAT 3964930 Query 47969 CAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAG 48028 |||| ||||| ||||| || ||||| ||||| | |||||||| | || || Sbjct 3964931 AAGTCGGTCTGCCACGAACTCAATATACTGCTTCATTAACGTGCAATTCATCCTAATGAG 3964990 Query 48029 TTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTAT 48088 || || || | | |||||| || ||| | || || || || |||| | ||||| Sbjct 3964991 CTTCACAGGCAAGGTCTCCGTGAGGAACCCCTGCTCTATCCGAACGGCATTAATAATTAT 3965050 Query 48089 CGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAA 48148 | || | | || ||| | | || ||||| ||||| | || ||||| Sbjct 3965051 TTCCTTCACTCTCTGCTTGGAAGGTTTGTGGACCAGTTGTTTGAACATCAGGCAGGCAAA 3965110 Query 48149 ATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCAT 48208 ||||| || | ||| |||||||| ||||| | ||| || ||||| || || || ||||| Sbjct 3965111 GTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTCAG-CCAGGCAT 3965169 Query 48209 TAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTC 48268 || | ||||| |||||||| ||||| | ||| ||||| ||||||||||| || ||||| Sbjct 3965170 CAGGTCGCGTTTCTTGAGCCAGAATATCGTCGCAAAAGAACCAGAAAAGAAGATTCCTTC 3965229 Query 48269 TACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTA---TCCACCG 48325 || || ||||| | || | || ||||| | || || |||| |||| | Sbjct 3965230 CACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCCTCTTTGTCGCCAGTCCAATG 3965289 Query 48326 TTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 48385 ||||| || |||||| ||||||||||||||||| | | || || |||||||| Sbjct 3965290 CAAGGCCCAGTCTGCCTTC---TTTACACAAGGCATTGTCTGGAGGGCGTTGAAGAGAAA 3965346 Query 48386 GtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTG 48445 | |||| | | ||||||||||||| | || || | ||||| ||||| || || || Sbjct 3965347 TTCCCTTTCTTCGGAATCTTTAACGTAACTGTCAATGAGGAGACTGTACATCTCAGAATG 3965406 Query 48446 AATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 || ||||| || || || || || || || ||||| | |||||||| ||||| || || Sbjct 3965407 GATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 3965466 Query 48506 CGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGC 48565 | ||| || || |||| || ||||||||||| |||||||| | |||| || || Sbjct 3965467 TTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTCGGCACAAAGAAAGC 3965526 Query 48566 TAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCC-AGTCATTGATAT 48624 | || || | ||| ||| | || | | |||| ||||| || | || | Sbjct 3965527 CAGAACGTGGGATAGAAAGTATCTCTCCTCAGGCTTCAG-GGATTCCTGGTGCTGAATGT 3965585 Query 48625 CTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATAT 48684 | || || | ||| || ||||||||||||||||| || ||||| ||||| | |||||| | Sbjct 3965586 CCTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTCATACATCT 3965645 Query 48685 TCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 ||| |||||| ||| | || ||||| || ||||| Sbjct 3965646 GCCAAATATCAAGGTACTCGACAGGGAAGATGACAAA 3965682 >seq3332 Length=249688 Score = 271 bits (300), Expect = 1e-67 Identities = 604/900 (67%), Gaps = 16/900 (2%) Strand=Plus/Minus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| ||||| || | ||||| | || | | ||||| || || ||||| || ||| Sbjct 148983 GACATCACTCCTATCCTCTGATACTTGCCTCCTCTCTTCTCAAAGAAGTTAGTCTTCCCT 148924 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAAT 47954 |||| ||| ||||| ||||||| ||||||||||| || | | ||| || |||| Sbjct 148923 TCCAGTGAAATATTCTCCATAAGGTCAAATGGATTTTCTACTCTGGAAACCTTGCTAAAA 148864 Query 47955 CCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATAT--CTTT-TCATCATTTCA 48011 |||| || | | |||| ||||| | |||||| ||||| |||| | | ||| Sbjct 148863 CCTAGTTTCTACCTAAGTCAGTCTGCCATGAATTCAATATACTGCTTTATTAACATG--- 148807 Query 48012 CAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTG 48071 || ||||| || || || || || || | |||| | || ||||| || || || | Sbjct 148806 CAGTTCATCCCAATGAGCTTCACGGGCAAGGCCTGTGGGAGGAACTCCTGGTCTATCCTA 148747 Query 48072 ACAGCATCCACTATTATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTA 48131 ||||||| | |||| | || | | ||| ||| || | || ||||| Sbjct 148746 ACAGCATTGATAGTTATTTCCTTCACTCTCTGCTCTGAAGGTTTATGGACCAGGTGTTTG 148687 Query 48132 AACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAA 48191 ||||| | || ||||| | | || | ||| |||||||| ||||| | || || ||| Sbjct 148686 AACATCAGGCAGGCAAAGTTATGGTGTAAACCCTCATCTCTGCTAATAAGCTCATTGGAA 148627 Query 48192 AAT-GTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCC 48250 || ||||| || ||||| || | | ||| |||||||| ||||| | ||| |||| || Sbjct 148626 AACCGTGAGGCCAGGCATCAGGCTGCATTTCTTGAGCCAGAATATCGACGCAGAAGAACC 148567 Query 48251 AGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTC 48310 | ||||| | || ||||| ||| ||||| | | | || ||||| | || || Sbjct 148566 AAAAAAGGAGATTCCTTCCGTGGCAGCAAAGTCCACATCCCATTCCCCGTAGGTAGCCTC 148507 Query 48311 GTTGTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTC 48367 |||| | ||| | |||||||| ||||||||| || ||||||||||||| || Sbjct 148506 TTTGTCCCCAACCCAACACAAGGCCCAATCTGCCTTCTTCCTTCCACAAGGCATTGTCTC 148447 Query 48368 TATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAG 48427 || | || |||||||| | | | || ||| |||||||| ||||| || | | || Sbjct 148446 GATGGTGTTGAAGAGAAATTCTGTCTCTTTGGAATCTTTAATATAAGTGTCAGTGAGGAG 148387 Query 48428 ACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGC 48487 |||| |||| || || || || ||||| || || || || || || || ||||| | || Sbjct 148386 ACTACACATCTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGGC 148327 Query 48488 TTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATC 48547 |||||| ||||| || || | | | | || |||| || ||||||||| | ||| | Sbjct 148326 TTCTGTCATCTGAACTTCTTGGCCACACCACTCCACCAAGTTTTCATTTACTGTGCCAAC 148267 Query 48548 ACTAGCAGCAAAAAATGC--TAAT----ACATGTTTAATAAAATATTTTTCGTTGGAAGT 48601 ||| | ||||| || || ||| || || ||||||| | | || | | | Sbjct 148266 ACTCACCGCAAAGAAAGCCAGAATGTGAACGTGGGGTATAAAATCTCTCTCCTCAGGCTT 148207 Query 48602 CAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGA 48661 ||| | ||||| | || || || || | || || ||||||||||||||||| || Sbjct 148206 CAGCGATTCCCAGTGTTGAATGTCCTTGGAAAGATTCACCTCTTCAGCTGTCCAAAAGGA 148147 Query 48662 TGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 ||||| ||||| ||| |||| | ||| | ||| ||| | || ||||| || ||||| Sbjct 148146 AGCCTCAGCTTTCTTACACATCTGCCAAAGGTCATGGTACTTCATAGGGAAGATGACAAA 148087 >seq348 Length=1658837 Score = 129 bits (142), Expect = 8e-25 Identities = 131/171 (77%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| |||||||||||||| || || |||||| ||| |||| || || || || || | Sbjct 308371 TCCAGCCGTAGAAATGCATACTGGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 308312 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 ||| || || |||||||| |||||||| ||||| ||||| ||||| || | || ||| | Sbjct 308311 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTTTCAGCTGCCATCTTAAGAACGGTTT 308252 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | || | ||||||||||| ||| || ||| ||| || | ||||| |||| Sbjct 308251 TCTGTGAAATTTCCCAAACAGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 308201 Score = 123 bits (136), Expect = 3e-23 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| | || Sbjct 305685 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATGGAC 305626 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| ||||||| ||| |||||||| |||||||| ||||| || || | | |||||| Sbjct 305625 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 305566 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 305565 TTTCTTATACCAT 305553 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||||||||| |||||||| || ||||| || |||| || || || | || | ||| Sbjct 296253 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGT 296194 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| |||||||| ||||| || | ||| |||||||| | ||| || ||||||| || Sbjct 296193 TCTTCCTTTCCTGTGTTCTTCTTTAAATCCAGAAACTCAAAAATGTCTAAATGCCAAGGC 296134 Query 78123 TCTAGATATATTGCCATAACTCCAGGTCG 78151 || || || || || | | |||||||| Sbjct 296133 TCCAGGTAAATAGCAAATGCCCCAGGTCG 296105 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| || |||||||| || ||| Sbjct 288017 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 287958 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 |||||||||||||| | || || || | ||||| || || | || | ||||||| Sbjct 287957 TATGTTTCAATAGCAGCATCAATATCTTCTGCGTGAATCCCCACAGACACCCTCATCAAC 287898 Query 78519 ATATGCTGAGGTCTTTC 78535 ||||| || |||||||| Sbjct 287897 ATATGTTGTGGTCTTTC 287881 Score = 86.0 bits (94), Expect = 9e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 77915 ATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCA 77974 ||||||| |||||||| ||||||||||| ||||||| ||||| ||||||||||| || Sbjct 296708 ATATAGCTTCTCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACATTCATTTGGACA 296649 Query 77975 CATCAATGACCAGTC 77989 || ||| |||||||| Sbjct 296648 CAACAAGGACCAGTC 296634 >seq878 Length=898115 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| || ||||| ||||| || ||||| || || ||||| ||| Sbjct 679152 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCTTG 679093 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||||| ||| ||||| ||||||||||| || ||||| || || ||||| || Sbjct 679092 AGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGC 679034 Score = 100 bits (110), Expect = 4e-16 Identities = 109/143 (76%), Gaps = 4/143 (3%) Strand=Plus/Minus Query 47791 TTCT-TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCC 47846 |||| ||| |||||| |||| || | |||| ||| ||| | || ||||| |||||| Sbjct 680884 TTCTCTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 680825 Query 47847 ATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATA 47906 || | ||||| || || || | ||||| || || ||||| || ||||||| ||| ||| Sbjct 680824 ATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATA 680765 Query 47907 TTTTCCATAAAATCAAATGGATT 47929 || |||||||| ||||||||||| Sbjct 680764 TTCTCCATAAAGTCAAATGGATT 680742 Score = 89.7 bits (98), Expect = 7e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 48638 TACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACT 48697 ||| ||||||||||||||||| || ||||| ||||| |||||||| | ||| |||||| Sbjct 675826 TACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATG 675767 Query 48698 GTATTGGATTGGGAAAATAACAAA 48721 ||||| ||| ||||| || ||||| Sbjct 675766 GTATTCGATAGGGAAGATGACAAA 675743 >seq674 Length=1058379 Score = 96.9 bits (106), Expect = 5e-15 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 48638 TACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACT 48697 ||| ||||| || ||||| || ||||||| ||| ||||||||||| ||||| |||||| Sbjct 547038 TACCTCTTCGGCCGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATATCAGG 546979 Query 48698 GTATTGGATTGGGAAAATAACAAATC 48723 ||||||||||||||| || ||||||| Sbjct 546978 GTATTGGATTGGGAAGATGACAAATC 546953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694523692371040