Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq19 320 2e-82
seq3332 268 1e-66
seq348 127 3e-24
seq878 116 5e-21
seq674 105 1e-17
>seq19
Length=4596781
Score = 320 bits (354), Expect = 2e-82
Identities = 638/937 (68%), Gaps = 16/937 (2%)
Strand=Plus/Plus
Query 46280 TTCT-TTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCT-TGTGACATAACTCCCAT 46337
|||| ||| ||||| |||| || | |||| ||| | || | |||||| ||||||||
Sbjct 3964756 TTCTCTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTGTTGGATTTGACATCACTCCCAT 3964815
Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397
| || || |||||||| | || || || || || ||||||| ||| |||||
Sbjct 3964816 CCTCTGATACTCACCTACTCTCTTTTCAAAGAAGTTCC-----CCTTCCAGTGAAATATT 3964870
Query 46398 TTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAAT 46457
||||| || ||||| ||||| || | ||| || ||| |||| || ||
Sbjct 3964871 CTCCATGAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCCAAAACCTAGCTCCAGCAT 3964930
Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517
|||| ||||| ||||| || |||||| ||||| | |||||||| | |||||
Sbjct 3964931 AAGTCGGTCTGCCACGAACTCAATATACTGCTTCATTAACGTGCAATTCATCCTAATGAG 3964990
Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT 46577
|| || || | | |||||| || ||| | || || || || |||| |||||
Sbjct 3964991 CTTCACAGGCAAGGTCTCCGTGAGGAACCCCTGCTCTATCCGAACGGCATTAATAATTAT 3965050
Query 46578 CGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAA 46637
| ||| | | || ||| || | || ||||| ||||| | || |||||
Sbjct 3965051 TTCCTTCACTCTCTGCTTGGAAGGTTTGTGGACCAGTTGTTTGAACATCAGGCAGGCAAA 3965110
Query 46638 ATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCAT 46697
||||| || | || |||||||| ||||| | ||| || ||||| || |||| ||||||
Sbjct 3965111 GTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTCAGCC-AGGCAT 3965169
Query 46698 TAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTC 46757
|| | || || |||||||| ||||| | ||| ||||| ||||||||||| || |||||
Sbjct 3965170 CAGGTCGCGTTTCTTGAGCCAGAATATCGTCGCAAAAGAACCAGAAAAGAAGATTCCTTC 3965229
Query 46758 TACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATG---AATCCACCT 46814
||||| || || | |||| | || ||||| | || || || | | ||||
Sbjct 3965230 CACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCCTCTTTGTCGCCAGTCCAATG 3965289
Query 46815 TTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 46874
||||| || ||||| |||||||||||||||||| | | || || ||||||||
Sbjct 3965290 CAAGGCCCAGTCTGCCTT---CTTTACACAAGGCATTGTCTGGAGGGCGTTGAAGAGAAA 3965346
Query 46875 GtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATG 46934
| |||| || ||||||||| || | || || | ||||| ||||| || |||||
Sbjct 3965347 TTCCCTTTCTTCGGAATCTTTAACGTAACTGTCAATGAGGAGACTGTACATCTCAGAATG 3965406
Query 46935 AATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTC 46994
|||||||| || || || || || || || ||||| | ||||| |||||||| || ||
Sbjct 3965407 GATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 3965466
Query 46995 TGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGC 47054
| | ||| || || ||| || ||||| ||||| |||||||| | |||| || ||
Sbjct 3965467 TTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTCGGCACAAAGAAAGC 3965526
Query 47055 CAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCC-AGTCATTGATAT 47113
|| || || | ||| ||| | || || | |||| ||||| || | || |
Sbjct 3965527 CAGAACGTGGGATAGAAAGTATCTCTCCTCAGGCTTCAG-GGATTCCTGGTGCTGAATGT 3965585
Query 47114 CTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATAT 47173
| || || | ||| || |||||||||||||| || || ||||| ||||| | |||||| |
Sbjct 3965586 CCTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTCATACATCT 3965645
Query 47174 TCCATATATCACGATATTGGATCGGAAAAATAACAAA 47210
||| |||||| | || | || || || || |||||
Sbjct 3965646 GCCAAATATCAAGGTACTCGACAGGGAAGATGACAAA 3965682
>seq3332
Length=249688
Score = 268 bits (296), Expect = 1e-66
Identities = 616/922 (67%), Gaps = 12/922 (1%)
Strand=Plus/Minus
Query 46323 TGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCC 46382
|||||| ||||| || | || || | ||| | | ||||| || || ||||| || ||
Sbjct 148984 TGACATCACTCCTATCCTCTGATACTTGCCTCCTCTCTTCTCAAAGAAGTTAGTCTTCCC 148925
Query 46383 TTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAA 46442
||||| ||| ||||| ||||||| ||||| ||||| || | ||| || ||||
Sbjct 148924 TTCCAGTGAAATATTCTCCATAAGGTCAAATGGATTTTCTACTCTGGAAACCTTGCTAAA 148865
Query 46443 TCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACA 46502
|||| || | | |||| ||||| | |||||| |||||| || || | ||
Sbjct 148864 ACCTAGTTTCTACCTAAGTCAGTCTGCCATGAATTCAATATACTGCTTTATTAACATGCA 148805
Query 46503 ATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGAC 46562
||||| || ||||| || || || | |||| | || ||||| || || || | ||
Sbjct 148804 GTTCATCCCAATGAGCTTCACGGGCAAGGCCTGTGGGAGGAACTCCTGGTCTATCCTAAC 148745
Query 46563 AGCATCCGATA-TTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAA 46621
||||| |||| |||| | ||| | | ||| ||| ||| | || ||||| |
Sbjct 148744 AGCATT-GATAGTTATTTCCTTCACTCTCTGCTCTGAAGGTTTATGGACCAGGTGTTTGA 148686
Query 46622 ACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAA 46681
|||| | || ||||| | | || | || |||||||| ||||| | || || ||||
Sbjct 148685 ACATCAGGCAGGCAAAGTTATGGTGTAAACCCTCATCTCTGCTAATAAGCTCATTGGAAA 148626
Query 46682 AT-GTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCA 46740
| ||||| |||||||| || | | || |||||||| ||||| | ||| |||| |||
Sbjct 148625 ACCGTGAGGCCAGGCATCAGGCTGCATTTCTTGAGCCAGAATATCGACGCAGAAGAACCA 148566
Query 46741 GAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCA 46800
||||| | || ||||| || || || | ||| | || ||||| | || ||
Sbjct 148565 AAAAAGGAGATTCCTTCCGTGGCAGCAAAGTCCACATCCCATTCCCCGTAGGTAGCCTCT 148506
Query 46801 TTATG---AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCT 46857
|| | || ||| | |||||||| ||||| ||| || ||||||||||||| ||
Sbjct 148505 TTGTCCCCAACCCAACACAAGGCCCAATCTGCCTTCTTCCTTCCACAAGGCATTGTCTCG 148446
Query 46858 ATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGA 46917
|| | || |||||||| | | | || | |||||||| ||| || || | | |||
Sbjct 148445 ATGGTGTTGAAGAGAAATTCTGTCTCTTTGGAATCTTTAATATAAGTGTCAGTGAGGAGA 148386
Query 46918 CTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCT 46977
||| |||| || ||||| |||||||| || || || || || || || ||||| | |||
Sbjct 148385 CTACACATCTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGGCT 148326
Query 46978 TCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCA 47037
|| || ||||| || ||| | | | | || ||| || ||||| ||| | ||| ||
Sbjct 148325 TCTGTCATCTGAACTTCTTGGCCACACCACTCCACCAAGTTTTCATTTACTGTGCCAACA 148266
Query 47038 CTAGCAGCAAAAAATGCC--AAT----ACATGTTTAATAAAATATTTTTCATCGGTAGTC 47091
|| | ||||| || ||| ||| || || ||||||| | | || || | ||
Sbjct 148265 CTCACCGCAAAGAAAGCCAGAATGTGAACGTGGGGTATAAAATCTCTCTCCTCAGGCTTC 148206
Query 47092 AGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGAC 47151
|| | ||||| | || || || || | || || |||||||||||||| || ||
Sbjct 148205 AGCGATTCCCAGTGTTGAATGTCCTTGGAAAGATTCACCTCTTCAGCTGTCCAAAAGGAA 148146
Query 47152 GCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAAT 47211
||||| ||||| ||| |||| | ||| | ||| | || | || || || || |||||
Sbjct 148145 GCCTCAGCTTTCTTACACATCTGCCAAAGGTCATGGTACTTCATAGGGAAGATGACAAAG 148086
Query 47212 CTATTTGGATTTTTTGCAAGTA 47233
| | || |||| || ||||
Sbjct 148085 CGAAGAGGGTTTTCTGTCAGTA 148064
>seq348
Length=1658837
Score = 127 bits (140), Expect = 3e-24
Identities = 108/133 (81%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781
||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| | ||
Sbjct 305685 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATGGAC 305626
Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841
||||| ||||||| ||| ||||||||||||||||| ||||| || || | | ||||||
Sbjct 305625 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 305566
Query 75842 TTTCTGAGACCAT 75854
||||| | |||||
Sbjct 305565 TTTCTTATACCAT 305553
Score = 123 bits (136), Expect = 4e-23
Identities = 130/171 (76%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503
|||| |||||||||||||| || || |||||| ||| | || || || || || || |
Sbjct 308371 TCCAGCCGTAGAAATGCATACTGGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 308312
Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563
||| || || |||||||| |||||||| ||||| ||||| ||||| || | || ||| |
Sbjct 308311 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTTTCAGCTGCCATCTTAAGAACGGTTT 308252
Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614
| || | ||||||||||| ||| || ||| ||| || | ||||| ||||
Sbjct 308251 TCTGTGAAATTTCCCAAACAGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 308201
Score = 105 bits (116), Expect = 1e-17
Identities = 123/166 (74%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398
|| || | ||| |||||||| ||||| | || || ||||| || || || || || ||
Sbjct 282575 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACGGCAATCCTTGCTGCCAGGATG 282516
Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458
|||||||||||||| | || || |||| || ||| | || || || |||||||||| |
Sbjct 282515 GCATAGTCAGGATGCTTAGTTGTCAAGGTCGCAGCTGTCTCAGCAGCCAAAGTATCTAGT 282456
Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504
|| | ||| || || || | |||| ||||| || ||||||||||
Sbjct 282455 TCCACAGTGGTGACCCCACTGTATAAGCCTTGGATTACTTTCATGG 282410
Score = 100 bits (110), Expect = 4e-16
Identities = 105/138 (76%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053
|| || ||||| || | || ||||| ||||| || ||||| || |||||||| || |||
Sbjct 288017 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 287958
Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113
|||||||||||| | || || ||||| | ||||| || |||| || | |||||||
Sbjct 287957 TATGTTTCAATAGCAGCATCAATATCTTCTGCGTGAATCCCCACAGACACCCTCATCAAC 287898
Query 77114 ATATGCTGAGGTCGTTCT 77131
||||| || |||| ||||
Sbjct 287897 ATATGTTGTGGTCTTTCT 287880
Score = 95.1 bits (104), Expect = 2e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 75950 GATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAAC 76009
|| || | ||| ||||| || | || | || | || || || || || || || ||
Sbjct 300824 GAGCCCTCATAGGTTTCATATGGGCCATGCTCCTTGGCCAGGTCACAGCTGGCTTCCAAG 300765
Query 76010 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCA 76069
|| || |||||||| ||||| || |||| |||||| || || ||||| |||| |||
Sbjct 300764 GCTCCATAATAAATGGTTTCAAAGATCTGCTTATTCAGTAGCTGGGCTTCTGGACTCTCA 300705
Query 76070 AAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGT 76129
|||||||| | |||||||| |||||||| || || || || || || ||||| ||
Sbjct 300704 AAAGGATACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCGATTCCAATGGGG 300645
Query 76130 CTATGTCTCTTATTGGA 76146
| ||| | ||||| ||
Sbjct 300644 CGATGGCGTTTATTTGA 300628
Score = 86.0 bits (94), Expect = 9e-12
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579
|||||||| ||||||||||| ||||||| ||||||||||||||| ||||||| ||| |||
Sbjct 296698 TCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACATTCATTTGGACACAACAAGGAC 296639
Query 76580 CACTC 76584
|| ||
Sbjct 296638 CAGTC 296634
>seq878
Length=898115
Score = 116 bits (128), Expect = 5e-21
Identities = 100/124 (81%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713
|||||||| ||||| | ||| || ||||| ||||| |||||||| || || || || |||
Sbjct 679152 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCTTG 679093
Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773
||||| ||||| | ||| ||||| ||||||||||| || ||||| ||||| || || ||
Sbjct 679092 AGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGCC 679033
Query 46774 ACAA 46777
||||
Sbjct 679032 ACAA 679029
>seq674
Length=1058379
Score = 105 bits (116), Expect = 1e-17
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711
|||||||||| || || | ||| || ||||| ||||| || ||||| || || | || |
Sbjct 558250 CTTCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCGGGCATGAGACCTCTTTTCT 558191
Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771
| ||||| |||||||| || |||||||| || ||||| || ||||||||||| || || |
Sbjct 558190 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAG 558131
Query 46772 CGACAAGTCTCTCTCC 46787
| || | ||| || ||
Sbjct 558130 CCACCACTCTTTCCCC 558115
Score = 87.8 bits (96), Expect = 3e-12
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186
||| ||||| || |||||||| || |||| ||| ||||||||||| ||||| |||||| |
Sbjct 547038 TACCTCTTCGGCCGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATATCAGG 546979
Query 47187 ATATTGGATCGGAAAAATAACAAATC 47212
|||||||| || || || |||||||
Sbjct 546978 GTATTGGATTGGGAAGATGACAAATC 546953
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712785476915520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |