Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq19 320 2e-82 seq3332 268 1e-66 seq348 127 3e-24 seq878 116 5e-21 seq674 105 1e-17 >seq19 Length=4596781 Score = 320 bits (354), Expect = 2e-82 Identities = 638/937 (68%), Gaps = 16/937 (2%) Strand=Plus/Plus Query 46280 TTCT-TTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCT-TGTGACATAACTCCCAT 46337 |||| ||| ||||| |||| || | |||| ||| | || | |||||| |||||||| Sbjct 3964756 TTCTCTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTGTTGGATTTGACATCACTCCCAT 3964815 Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397 | || || |||||||| | || || || || || ||||||| ||| ||||| Sbjct 3964816 CCTCTGATACTCACCTACTCTCTTTTCAAAGAAGTTCC-----CCTTCCAGTGAAATATT 3964870 Query 46398 TTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAAT 46457 ||||| || ||||| ||||| || | ||| || ||| |||| || || Sbjct 3964871 CTCCATGAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCCAAAACCTAGCTCCAGCAT 3964930 Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517 |||| ||||| ||||| || |||||| ||||| | |||||||| | ||||| Sbjct 3964931 AAGTCGGTCTGCCACGAACTCAATATACTGCTTCATTAACGTGCAATTCATCCTAATGAG 3964990 Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT 46577 || || || | | |||||| || ||| | || || || || |||| ||||| Sbjct 3964991 CTTCACAGGCAAGGTCTCCGTGAGGAACCCCTGCTCTATCCGAACGGCATTAATAATTAT 3965050 Query 46578 CGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAA 46637 | ||| | | || ||| || | || ||||| ||||| | || ||||| Sbjct 3965051 TTCCTTCACTCTCTGCTTGGAAGGTTTGTGGACCAGTTGTTTGAACATCAGGCAGGCAAA 3965110 Query 46638 ATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCAT 46697 ||||| || | || |||||||| ||||| | ||| || ||||| || |||| |||||| Sbjct 3965111 GTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTCAGCC-AGGCAT 3965169 Query 46698 TAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTC 46757 || | || || |||||||| ||||| | ||| ||||| ||||||||||| || ||||| Sbjct 3965170 CAGGTCGCGTTTCTTGAGCCAGAATATCGTCGCAAAAGAACCAGAAAAGAAGATTCCTTC 3965229 Query 46758 TACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATG---AATCCACCT 46814 ||||| || || | |||| | || ||||| | || || || | | |||| Sbjct 3965230 CACAGCAGCAAAGTCCACAACCCGTTCCCCGTAGGTAGCCTCTTTGTCGCCAGTCCAATG 3965289 Query 46815 TTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 46874 ||||| || ||||| |||||||||||||||||| | | || || |||||||| Sbjct 3965290 CAAGGCCCAGTCTGCCTT---CTTTACACAAGGCATTGTCTGGAGGGCGTTGAAGAGAAA 3965346 Query 46875 GtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATG 46934 | |||| || ||||||||| || | || || | ||||| ||||| || ||||| Sbjct 3965347 TTCCCTTTCTTCGGAATCTTTAACGTAACTGTCAATGAGGAGACTGTACATCTCAGAATG 3965406 Query 46935 AATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTC 46994 |||||||| || || || || || || || ||||| | ||||| |||||||| || || Sbjct 3965407 GATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 3965466 Query 46995 TGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGC 47054 | | ||| || || ||| || ||||| ||||| |||||||| | |||| || || Sbjct 3965467 TTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTCGGCACAAAGAAAGC 3965526 Query 47055 CAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCC-AGTCATTGATAT 47113 || || || | ||| ||| | || || | |||| ||||| || | || | Sbjct 3965527 CAGAACGTGGGATAGAAAGTATCTCTCCTCAGGCTTCAG-GGATTCCTGGTGCTGAATGT 3965585 Query 47114 CTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATAT 47173 | || || | ||| || |||||||||||||| || || ||||| ||||| | |||||| | Sbjct 3965586 CCTTGGAAAGATCCACCTCTTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTCATACATCT 3965645 Query 47174 TCCATATATCACGATATTGGATCGGAAAAATAACAAA 47210 ||| |||||| | || | || || || || ||||| Sbjct 3965646 GCCAAATATCAAGGTACTCGACAGGGAAGATGACAAA 3965682 >seq3332 Length=249688 Score = 268 bits (296), Expect = 1e-66 Identities = 616/922 (67%), Gaps = 12/922 (1%) Strand=Plus/Minus Query 46323 TGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCC 46382 |||||| ||||| || | || || | ||| | | ||||| || || ||||| || || Sbjct 148984 TGACATCACTCCTATCCTCTGATACTTGCCTCCTCTCTTCTCAAAGAAGTTAGTCTTCCC 148925 Query 46383 TTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAA 46442 ||||| ||| ||||| ||||||| ||||| ||||| || | ||| || |||| Sbjct 148924 TTCCAGTGAAATATTCTCCATAAGGTCAAATGGATTTTCTACTCTGGAAACCTTGCTAAA 148865 Query 46443 TCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACA 46502 |||| || | | |||| ||||| | |||||| |||||| || || | || Sbjct 148864 ACCTAGTTTCTACCTAAGTCAGTCTGCCATGAATTCAATATACTGCTTTATTAACATGCA 148805 Query 46503 ATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGAC 46562 ||||| || ||||| || || || | |||| | || ||||| || || || | || Sbjct 148804 GTTCATCCCAATGAGCTTCACGGGCAAGGCCTGTGGGAGGAACTCCTGGTCTATCCTAAC 148745 Query 46563 AGCATCCGATA-TTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAA 46621 ||||| |||| |||| | ||| | | ||| ||| ||| | || ||||| | Sbjct 148744 AGCATT-GATAGTTATTTCCTTCACTCTCTGCTCTGAAGGTTTATGGACCAGGTGTTTGA 148686 Query 46622 ACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAA 46681 |||| | || ||||| | | || | || |||||||| ||||| | || || |||| Sbjct 148685 ACATCAGGCAGGCAAAGTTATGGTGTAAACCCTCATCTCTGCTAATAAGCTCATTGGAAA 148626 Query 46682 AT-GTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCA 46740 | ||||| |||||||| || | | || |||||||| ||||| | ||| |||| ||| Sbjct 148625 ACCGTGAGGCCAGGCATCAGGCTGCATTTCTTGAGCCAGAATATCGACGCAGAAGAACCA 148566 Query 46741 GAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCA 46800 ||||| | || ||||| || || || | ||| | || ||||| | || || Sbjct 148565 AAAAAGGAGATTCCTTCCGTGGCAGCAAAGTCCACATCCCATTCCCCGTAGGTAGCCTCT 148506 Query 46801 TTATG---AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCT 46857 || | || ||| | |||||||| ||||| ||| || ||||||||||||| || Sbjct 148505 TTGTCCCCAACCCAACACAAGGCCCAATCTGCCTTCTTCCTTCCACAAGGCATTGTCTCG 148446 Query 46858 ATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGA 46917 || | || |||||||| | | | || | |||||||| ||| || || | | ||| Sbjct 148445 ATGGTGTTGAAGAGAAATTCTGTCTCTTTGGAATCTTTAATATAAGTGTCAGTGAGGAGA 148386 Query 46918 CTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCT 46977 ||| |||| || ||||| |||||||| || || || || || || || ||||| | ||| Sbjct 148385 CTACACATCTCAGAATGGATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGGCT 148326 Query 46978 TCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCA 47037 || || ||||| || ||| | | | | || ||| || ||||| ||| | ||| || Sbjct 148325 TCTGTCATCTGAACTTCTTGGCCACACCACTCCACCAAGTTTTCATTTACTGTGCCAACA 148266 Query 47038 CTAGCAGCAAAAAATGCC--AAT----ACATGTTTAATAAAATATTTTTCATCGGTAGTC 47091 || | ||||| || ||| ||| || || ||||||| | | || || | || Sbjct 148265 CTCACCGCAAAGAAAGCCAGAATGTGAACGTGGGGTATAAAATCTCTCTCCTCAGGCTTC 148206 Query 47092 AGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGAC 47151 || | ||||| | || || || || | || || |||||||||||||| || || Sbjct 148205 AGCGATTCCCAGTGTTGAATGTCCTTGGAAAGATTCACCTCTTCAGCTGTCCAAAAGGAA 148146 Query 47152 GCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAAT 47211 ||||| ||||| ||| |||| | ||| | ||| | || | || || || || ||||| Sbjct 148145 GCCTCAGCTTTCTTACACATCTGCCAAAGGTCATGGTACTTCATAGGGAAGATGACAAAG 148086 Query 47212 CTATTTGGATTTTTTGCAAGTA 47233 | | || |||| || |||| Sbjct 148085 CGAAGAGGGTTTTCTGTCAGTA 148064 >seq348 Length=1658837 Score = 127 bits (140), Expect = 3e-24 Identities = 108/133 (81%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| ||||| ||||| || || || |||||||| ||||| | || Sbjct 305685 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTATAAGGTTCAATGGAC 305626 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| ||||||| ||| ||||||||||||||||| ||||| || || | | |||||| Sbjct 305625 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 305566 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 305565 TTTCTTATACCAT 305553 Score = 123 bits (136), Expect = 4e-23 Identities = 130/171 (76%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| |||||||||||||| || || |||||| ||| | || || || || || || | Sbjct 308371 TCCAGCCGTAGAAATGCATACTGGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 308312 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 ||| || || |||||||| |||||||| ||||| ||||| ||||| || | || ||| | Sbjct 308311 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTTTCAGCTGCCATCTTAAGAACGGTTT 308252 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 | || | ||||||||||| ||| || ||| ||| || | ||||| |||| Sbjct 308251 TCTGTGAAATTTCCCAAACAGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 308201 Score = 105 bits (116), Expect = 1e-17 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | ||| |||||||| ||||| | || || ||||| || || || || || || Sbjct 282575 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACGGCAATCCTTGCTGCCAGGATG 282516 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 |||||||||||||| | || || |||| || ||| | || || || |||||||||| | Sbjct 282515 GCATAGTCAGGATGCTTAGTTGTCAAGGTCGCAGCTGTCTCAGCAGCCAAAGTATCTAGT 282456 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || | ||| || || || | |||| ||||| || |||||||||| Sbjct 282455 TCCACAGTGGTGACCCCACTGTATAAGCCTTGGATTACTTTCATGG 282410 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | || ||||| ||||| || ||||| || |||||||| || ||| Sbjct 288017 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 287958 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 |||||||||||| | || || ||||| | ||||| || |||| || | ||||||| Sbjct 287957 TATGTTTCAATAGCAGCATCAATATCTTCTGCGTGAATCCCCACAGACACCCTCATCAAC 287898 Query 77114 ATATGCTGAGGTCGTTCT 77131 ||||| || |||| |||| Sbjct 287897 ATATGTTGTGGTCTTTCT 287880 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 75950 GATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAAC 76009 || || | ||| ||||| || | || | || | || || || || || || || || Sbjct 300824 GAGCCCTCATAGGTTTCATATGGGCCATGCTCCTTGGCCAGGTCACAGCTGGCTTCCAAG 300765 Query 76010 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCA 76069 || || |||||||| ||||| || |||| |||||| || || ||||| |||| ||| Sbjct 300764 GCTCCATAATAAATGGTTTCAAAGATCTGCTTATTCAGTAGCTGGGCTTCTGGACTCTCA 300705 Query 76070 AAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGT 76129 |||||||| | |||||||| |||||||| || || || || || || ||||| || Sbjct 300704 AAAGGATACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCGATTCCAATGGGG 300645 Query 76130 CTATGTCTCTTATTGGA 76146 | ||| | ||||| || Sbjct 300644 CGATGGCGTTTATTTGA 300628 Score = 86.0 bits (94), Expect = 9e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 |||||||| ||||||||||| ||||||| ||||||||||||||| ||||||| ||| ||| Sbjct 296698 TCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACATTCATTTGGACACAACAAGGAC 296639 Query 76580 CACTC 76584 || || Sbjct 296638 CAGTC 296634 >seq878 Length=898115 Score = 116 bits (128), Expect = 5e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||| || ||||| ||||| |||||||| || || || || ||| Sbjct 679152 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCGCGTTTCTTG 679093 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| | ||| ||||| ||||||||||| || ||||| ||||| || || || Sbjct 679092 AGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGCC 679033 Query 46774 ACAA 46777 |||| Sbjct 679032 ACAA 679029 >seq674 Length=1058379 Score = 105 bits (116), Expect = 1e-17 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| || || | ||| || ||||| ||||| || ||||| || || | || | Sbjct 558250 CTTCATCTCTGCTGATGAGTTCATTGGAAAACGTGAGTCCGGGCATGAGACCTCTTTTCT 558191 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||| |||||||| || |||||||| || ||||| || ||||||||||| || || | Sbjct 558190 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAG 558131 Query 46772 CGACAAGTCTCTCTCC 46787 | || | ||| || || Sbjct 558130 CCACCACTCTTTCCCC 558115 Score = 87.8 bits (96), Expect = 3e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| ||||| || |||||||| || |||| ||| ||||||||||| ||||| |||||| | Sbjct 547038 TACCTCTTCGGCCGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATATCAGG 546979 Query 47187 ATATTGGATCGGAAAAATAACAAATC 47212 |||||||| || || || ||||||| Sbjct 546978 GTATTGGATTGGGAAGATGACAAATC 546953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712785476915520