Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_032111.1
Length=163005
Score E
Sequences producing significant alignments: (Bits) Value
seq3332 89.7 5e-13
seq216 89.7 5e-13
seq87 86.0 7e-12
>seq3332
Length=249688
Score = 89.7 bits (98), Expect = 5e-13
Identities = 272/419 (65%), Gaps = 1/419 (0%)
Strand=Plus/Minus
Query 23524 TGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAAT-GTTAATCCTGGCATTAATCC 23582
|||| || ||||| || ||||| | ||||| ||||| || | || ||||| | |
Sbjct 148662 TGTAAACCCTCATCTCTGCTAATAAGCTCATTGGAAAACCGTGAGGCCAGGCATCAGGCT 148603
Query 23583 TCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGC 23642
| ||| || | ||| ||||| | ||| | || || ||||| | || || || ||
Sbjct 148602 GCATTTCTTGAGCCAGAATATCGACGCAGAAGAACCAAAAAAGGAGATTCCTTCCGTGGC 148543
Query 23643 CGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAtttttttGT 23702
|||||| ||||| | | || | || || | | || || ||| |
Sbjct 148542 AGCAAAGTCCACATCCCATTCCCCGTAGGTAGCCTCTTTGTCCCCAACCCAACACAAGGC 148483
Query 23703 CCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGAAAAGTTTT 23762
||||| |||||| || |||| ||||| || || | || |||||||| | |
Sbjct 148482 CCAATCTGCCTTCTTCCTTCCACAAGGCATTGTCTCGATGGTGTTGAAGAGAAATTCTGT 148423
Query 23763 TTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATT 23822
|||| |||| | ||||| || ||| | || | |||| |||| |||||||| || ||
Sbjct 148422 CTCTTTGGAATCTTTAATATAAGTGTCAGTGAGGAGACTACACATCTCAGAATGGATGTT 148363
Query 23823 TTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAA 23882
||| || ||||| || || ||||| ||||| | ||||| | || ||||| || |
Sbjct 148362 TTCCATGGCAATTTGGAAGCCATAGAAACAGCAGGCTTCTGTCATCTGAACTTCTTGGCC 148303
Query 23883 AAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAA 23941
| | | | | || ||||| || || | ||| |||| | ||||||||||| ||||
Sbjct 148302 ACACCACTCCACCAAGTTTTCATTTACTGTGCCAACACTCACCGCAAAGAAAGCCAGAA 148244
>seq216
Length=1824301
Score = 89.7 bits (98), Expect = 5e-13
Identities = 75/91 (82%), Gaps = 1/91 (1%)
Strand=Plus/Plus
Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464
|||| ||| |||||| || ||||||||||||||||| |||||||||||| ||||||||
Sbjct 1103643 CTCCTGGGCTCAAGCGATCCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCATG 1103702
Query 8465 AGCCACCACGCCAAGCTAATTTTTGTATTTT 8495
|||||| |||| ||| || ||| |||||
Sbjct 1103703 CGCCACCGCGCCCGGCTCATCATTG-ATTTT 1103732
>seq87
Length=2840558
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464
|||| ||| |||||| |||||||||||||||||||| |||||||||||| |||||||
Sbjct 1554547 CTCCTGGGCTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCG 1554606
Query 8465 AGCCACCACGCC 8476
|||||| ||||
Sbjct 1554607 CGCCACCGCGCC 1554618
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 521379067675400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |