Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq3332 89.7 5e-13 seq216 89.7 5e-13 seq87 86.0 7e-12 >seq3332 Length=249688 Score = 89.7 bits (98), Expect = 5e-13 Identities = 272/419 (65%), Gaps = 1/419 (0%) Strand=Plus/Minus Query 23524 TGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAAT-GTTAATCCTGGCATTAATCC 23582 |||| || ||||| || ||||| | ||||| ||||| || | || ||||| | | Sbjct 148662 TGTAAACCCTCATCTCTGCTAATAAGCTCATTGGAAAACCGTGAGGCCAGGCATCAGGCT 148603 Query 23583 TCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGC 23642 | ||| || | ||| ||||| | ||| | || || ||||| | || || || || Sbjct 148602 GCATTTCTTGAGCCAGAATATCGACGCAGAAGAACCAAAAAAGGAGATTCCTTCCGTGGC 148543 Query 23643 CGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAtttttttGT 23702 |||||| ||||| | | || | || || | | || || ||| | Sbjct 148542 AGCAAAGTCCACATCCCATTCCCCGTAGGTAGCCTCTTTGTCCCCAACCCAACACAAGGC 148483 Query 23703 CCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGAAAAGTTTT 23762 ||||| |||||| || |||| ||||| || || | || |||||||| | | Sbjct 148482 CCAATCTGCCTTCTTCCTTCCACAAGGCATTGTCTCGATGGTGTTGAAGAGAAATTCTGT 148423 Query 23763 TTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATT 23822 |||| |||| | ||||| || ||| | || | |||| |||| |||||||| || || Sbjct 148422 CTCTTTGGAATCTTTAATATAAGTGTCAGTGAGGAGACTACACATCTCAGAATGGATGTT 148363 Query 23823 TTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAA 23882 ||| || ||||| || || ||||| ||||| | ||||| | || ||||| || | Sbjct 148362 TTCCATGGCAATTTGGAAGCCATAGAAACAGCAGGCTTCTGTCATCTGAACTTCTTGGCC 148303 Query 23883 AAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAA 23941 | | | | | || ||||| || || | ||| |||| | ||||||||||| |||| Sbjct 148302 ACACCACTCCACCAAGTTTTCATTTACTGTGCCAACACTCACCGCAAAGAAAGCCAGAA 148244 >seq216 Length=1824301 Score = 89.7 bits (98), Expect = 5e-13 Identities = 75/91 (82%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464 |||| ||| |||||| || ||||||||||||||||| |||||||||||| |||||||| Sbjct 1103643 CTCCTGGGCTCAAGCGATCCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCATG 1103702 Query 8465 AGCCACCACGCCAAGCTAATTTTTGTATTTT 8495 |||||| |||| ||| || ||| ||||| Sbjct 1103703 CGCCACCGCGCCCGGCTCATCATTG-ATTTT 1103732 >seq87 Length=2840558 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464 |||| ||| |||||| |||||||||||||||||||| |||||||||||| ||||||| Sbjct 1554547 CTCCTGGGCTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCG 1554606 Query 8465 AGCCACCACGCC 8476 |||||| |||| Sbjct 1554607 CGCCACCGCGCC 1554618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521379067675400