Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq6485 159 5e-34 seq258 159 5e-34 seq1057 131 2e-25 >seq6485 Length=19947 Score = 159 bits (176), Expect = 5e-34 Identities = 217/303 (72%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 8283 GAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAG 8342 |||| | |||||| | || ||||| ||||| ||||| | |||| ||||||||||| | Sbjct 572 GAACACTGAACGCAGTAAAAGGACAGCCCTTCACGTTATTGCAGATGAGAGACTGAATTG 513 Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACC 8402 || | |||| ||| || || || ||||| || || ||||| ||||||||||| Sbjct 512 AGGCAGTGTTGATGATTTTAAAGCCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTAGT 453 Query 8403 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGA 8462 | || || |||||| || |||| || ||||| | |||||| || || |||| || | Sbjct 452 CAGGTGAACAGATGGGATTACCCATAAGTCCTTTCAAGGAGAATGGCGCTCCCATTTCTA 393 Query 8463 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8522 ||| ||||||| |||||||| | ||||| |||||||| | || || ||| |||| Sbjct 392 CCATGGTCTCACCAAAGATGGCATCTGGACGAGGCTTTTCTAGCAGGAGGGCGGGATACA 333 Query 8523 GCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTC 8582 | |||| || || | || || ||||||||| | | ||||| || ||||| |||| Sbjct 332 GTTCCATGGCATCAATATCACCATAAAGGGCCTCTAACCCCGCAGCCATTTCCTTCTCTC 273 Query 8583 CTG 8585 ||| Sbjct 272 CTG 270 >seq258 Length=1842251 Score = 159 bits (176), Expect = 5e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||| || |||| ||| ||| |||||||| || ||||| || ||||| || || Sbjct 697494 GTCTGGAATAGCCGCTCATCATCCCACTCTGGATGCTCCTGTTTAAGCACATCACAGACT 697435 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||||||||||| ||||| || |||||||||||||| || ||||| ||||| || || Sbjct 697434 CTGTTGTGTTCCCGTAGCCAAATTGTGGCGTACATCATCAGACCAGGCACCAGCCCGAAG 697375 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 | || || || ||||| | || | || ||| || | | ||| || |||||||| | | Sbjct 697374 ACTTCCTGGCCCACAGCAAACCGTAGGTGTTCAGGAATATGGGGTGGGTAGATCATCTCC 697315 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCTGA 9486 ||||| |||||||| | ||| ||||||| || || ||||| | |||| Sbjct 697314 ACCTGAGTATCTTTGACTGTGGGAGGATACACCTCTCCATCAATTACCTGA 697264 Score = 134 bits (148), Expect = 2e-26 Identities = 151/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| ||||||||||| ||||| || || |||||| ||| ||| | || Sbjct 696451 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 696392 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||| || ||||| || ||| |||| || |||||||| | || |||||||||||||| Sbjct 696391 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 696332 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTT 9828 ||| |||| | || | |||||| ||||||||||| | | | ||| || |||| Sbjct 696331 AGGAATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCTTTTGAATCGGGAAGCTC 696272 Query 9829 TGTTTTACCTGGTGAACGAGAA 9850 | | || |||| || ||||| Sbjct 696271 TTTCTTGCCTGAAAAATGAGAA 696250 >seq1057 Length=891284 Score = 131 bits (144), Expect = 2e-25 Identities = 171/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 ||||||| || ||| |||| || || ||||| ||||| |||||||||||| | || | Sbjct 883646 TCTTGACCATATTGAAGCCCATCTCACCACCGAATGTGCTCGGCTTCCAGTACTCTGGAG 883705 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| ||| | | |||||| |||||||| || |||||||| | || | || | Sbjct 883706 AGCAGATGGGATTCCCTAGGAGGCCCTTGAGGGAAAAGGGAGCCCCAATTTCTATCATAC 883765 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| || ||||| | ||| ||| || ||| |||| | | || | ||| | ||||| Sbjct 883766 TCTCCCCAAAGATAGAGTTTGGATGGCACTTCTCCAGAAGCAGCCCCGGGTAGAACTCCA 883825 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || |||| || ||| || || || | ||||| ||||||||||| || |||| Sbjct 883826 AGGCATCGATGTGTCCATACAGCTCCTCCAACTCGGCTGCGATCTCCTTCTCCCCTG 883882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716727053397440