Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03-
29] 16,711 sequences; 3,156,902,762 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq6485 159 5e-34
seq258 159 5e-34
seq1057 131 2e-25
>seq6485
Length=19947
Score = 159 bits (176), Expect = 5e-34
Identities = 217/303 (72%), Gaps = 0/303 (0%)
Strand=Plus/Minus
Query 8283 GAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAG 8342
|||| | |||||| | || ||||| ||||| ||||| | |||| ||||||||||| |
Sbjct 572 GAACACTGAACGCAGTAAAAGGACAGCCCTTCACGTTATTGCAGATGAGAGACTGAATTG 513
Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACC 8402
|| | |||| ||| || || || ||||| || || ||||| |||||||||||
Sbjct 512 AGGCAGTGTTGATGATTTTAAAGCCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTAGT 453
Query 8403 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGA 8462
| || || |||||| || |||| || ||||| | |||||| || || |||| || |
Sbjct 452 CAGGTGAACAGATGGGATTACCCATAAGTCCTTTCAAGGAGAATGGCGCTCCCATTTCTA 393
Query 8463 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8522
||| ||||||| |||||||| | ||||| |||||||| | || || ||| ||||
Sbjct 392 CCATGGTCTCACCAAAGATGGCATCTGGACGAGGCTTTTCTAGCAGGAGGGCGGGATACA 333
Query 8523 GCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTC 8582
| |||| || || | || || ||||||||| | | ||||| || ||||| ||||
Sbjct 332 GTTCCATGGCATCAATATCACCATAAAGGGCCTCTAACCCCGCAGCCATTTCCTTCTCTC 273
Query 8583 CTG 8585
|||
Sbjct 272 CTG 270
>seq258
Length=1842251
Score = 159 bits (176), Expect = 5e-34
Identities = 174/231 (75%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315
|||||||| || |||| ||| ||| |||||||| || ||||| || ||||| || ||
Sbjct 697494 GTCTGGAATAGCCGCTCATCATCCCACTCTGGATGCTCCTGTTTAAGCACATCACAGACT 697435
Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375
||||||||||||| ||||| || |||||||||||||| || ||||| ||||| || ||
Sbjct 697434 CTGTTGTGTTCCCGTAGCCAAATTGTGGCGTACATCATCAGACCAGGCACCAGCCCGAAG 697375
Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435
| || || || ||||| | || | || ||| || | | ||| || |||||||| | |
Sbjct 697374 ACTTCCTGGCCCACAGCAAACCGTAGGTGTTCAGGAATATGGGGTGGGTAGATCATCTCC 697315
Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCTGA 9486
||||| |||||||| | ||| ||||||| || || ||||| | ||||
Sbjct 697314 ACCTGAGTATCTTTGACTGTGGGAGGATACACCTCTCCATCAATTACCTGA 697264
Score = 134 bits (148), Expect = 2e-26
Identities = 151/202 (75%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708
|||||||||||| ||||||||||| ||||| || || |||||| ||| ||| | ||
Sbjct 696451 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 696392
Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768
|||||| || ||||| || ||| |||| || |||||||| | || ||||||||||||||
Sbjct 696391 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 696332
Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTT 9828
||| |||| | || | |||||| ||||||||||| | | | ||| || ||||
Sbjct 696331 AGGAATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCTTTTGAATCGGGAAGCTC 696272
Query 9829 TGTTTTACCTGGTGAACGAGAA 9850
| | || |||| || |||||
Sbjct 696271 TTTCTTGCCTGAAAAATGAGAA 696250
>seq1057
Length=891284
Score = 131 bits (144), Expect = 2e-25
Identities = 171/237 (72%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408
||||||| || ||| |||| || || ||||| ||||| |||||||||||| | || |
Sbjct 883646 TCTTGACCATATTGAAGCCCATCTCACCACCGAATGTGCTCGGCTTCCAGTACTCTGGAG 883705
Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468
|||||||| ||| | | |||||| |||||||| || |||||||| | || | || |
Sbjct 883706 AGCAGATGGGATTCCCTAGGAGGCCCTTGAGGGAAAAGGGAGCCCCAATTTCTATCATAC 883765
Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528
|||| || ||||| | ||| ||| || ||| |||| | | || | ||| | |||||
Sbjct 883766 TCTCCCCAAAGATAGAGTTTGGATGGCACTTCTCCAGAAGCAGCCCCGGGTAGAACTCCA 883825
Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585
|| |||| || ||| || || || | ||||| ||||||||||| || ||||
Sbjct 883826 AGGCATCGATGTGTCCATACAGCTCCTCCAACTCGGCTGCGATCTCCTTCTCCCCTG 883882
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716727053397440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |