Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptonychotes_20weddellii_20[refseq_20GCF_5F000349705.1_202013-03- 29] 16,711 sequences; 3,156,902,762 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1818 154 4e-32 seq975 154 4e-32 seq541 152 1e-31 seq377 149 2e-30 seq9145 145 2e-29 seq2520 145 2e-29 seq293 140 8e-28 seq182 131 4e-25 seq1 131 4e-25 seq176 116 9e-21 seq304 109 1e-18 seq203 109 1e-18 seq124 95.1 3e-14 seq496 93.3 1e-13 >seq1818 Length=636242 Score = 154 bits (170), Expect = 4e-32 Identities = 169/224 (75%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | |||||||||||||| || || || || || |||||||||||||| ||| Sbjct 433230 AAAATGC---AGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAA 433174 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||| || || || || || || || ||||||||||| || |||||||| ||||| Sbjct 433173 CCCTCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCT 433114 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || ||||| |||| ||||| || || || | || ||||||||| | ||| | | || Sbjct 433113 GATCAGCAGAGACTGATCTTTGCTGGCAAGTAACTGGAAGATGGACGCACTTTGTCTGAC 433054 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || ||| | ||||| || || || || |||||||| |||||||| Sbjct 433053 TACAACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 433010 >seq975 Length=833997 Score = 154 bits (170), Expect = 4e-32 Identities = 169/224 (75%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | |||||||||||||| || || || || || |||||||||||||| ||| Sbjct 558717 AAAATGC---AGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAA 558661 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || || || || || || || ||||||||||| || |||||||| ||||| Sbjct 558660 CCGTCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCT 558601 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || ||||| |||| ||||| || || || || || ||||||||| | ||| | | || Sbjct 558600 GATCAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTTTGTCTGAC 558541 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || ||| | ||||| || || || || |||||||| |||||||| Sbjct 558540 TACAACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 558497 >seq541 Length=1170729 Score = 152 bits (168), Expect = 1e-31 Identities = 169/223 (76%), Gaps = 7/223 (3%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| | || |||||||| || || || || || || |||||||| |||| Sbjct 610740 AGGTCAAAATGC---AGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGG 610684 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| |||||||||| ||||| || ||||| || || ||||| || || Sbjct 610683 TGGA--GCCCAGTGACACCATCGAAAACGTGAAGGCCAAGATCCAAGATAAAGAGGGCAT 610626 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 ||| || |||||||| | || ||||| || || || ||||| |||||||| | ||||| Sbjct 610625 CCCCCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCT 610566 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTT 178130 | | ||||| ||| |||| ||||| ||||| || || || ||| Sbjct 610565 TTCTGATTACAACATCCAGAAAGAGTCAACTCTCCACCTGGTT 610523 >seq377 Length=1354867 Score = 149 bits (164), Expect = 2e-30 Identities = 170/226 (75%), Gaps = 7/226 (3%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| | || |||||||| || || || || || || ||| |||| |||| Sbjct 824637 AGGTCAAAATGC---AGATCTTCGTGAAGACCCTAACCGGCAAGACCATCCCCCTGGAGG 824581 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| |||||||||| || || || ||||| || || ||||| || || Sbjct 824580 TGGA--GCCCAGTGACACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAAGAGGGCAT 824523 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 ||| || |||||||| | || ||||| || || || ||||| |||||||| | ||||| Sbjct 824522 CCCCCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCT 824463 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 | | ||||||||| |||| ||||| || || ||||| || ||| || Sbjct 824462 TTCTGATTATAACATCCAGAAAGAGTCGACCCTGCACCTGGTTCTG 824417 >seq9145 Length=4041 Score = 145 bits (160), Expect = 2e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| || || || || || ||||| |||||||| ||| |||||| Sbjct 494 CAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACCCTCAGAT 435 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || | || ||||||||| | || |||||||| ||||| || ||||| Sbjct 434 ACAATAGAAAATATAAAGGCCAAGATTCAGAATAAGGAAGGAATTCCTCCTGATCAGCAG 375 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || || ||||||||| | ||| | | || || ||| | Sbjct 374 AGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATT 315 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| | || || || |||||||| |||||||| Sbjct 314 CAAAAGGCGTCCACTCTTCATCTTGTGTTGAGACT 280 >seq2520 Length=369870 Score = 145 bits (160), Expect = 2e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| || || || || || ||||| |||||||| ||| |||||| Sbjct 183994 CAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACCCTCAGAT 184053 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || | || ||||||||| | || |||||||| ||||| || ||||| Sbjct 184054 ACAATAGAAAATATAAAGGCCAAGATTCAGAATAAGGAAGGAATTCCTCCTGATCAGCAG 184113 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || || ||||||||| | ||| | | || || ||| | Sbjct 184114 AGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATT 184173 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| | || || || |||||||| |||||||| Sbjct 184174 CAAAAGGCGTCCACTCTTCATCTTGTGTTGAGACT 184208 >seq293 Length=1771812 Score = 140 bits (154), Expect = 8e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||||||||| | || || || ||||| ||||||| ||| ||| || Sbjct 533877 CAGATTTTCGTGAAAACTCTTATGGGGAAGACCATCACTCTCGAGGCTGAACCCTCGGAT 533936 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||||||||| || |||||||| ||||| || ||||| Sbjct 533937 ACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAGCAG 533996 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || || || || ||||||||| | ||||| | || || ||| Sbjct 533997 AGATTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTCTGTCTGACTACAACACT 534056 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || |||||||| || ||||| Sbjct 534057 CAAAAGGAGTCCACTCTTCATCTTGTGTTAAGACT 534091 >seq182 Length=1985155 Score = 131 bits (144), Expect = 4e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||| ||||||| || || || || || |||| ||| |||| ||| ||| | Sbjct 1379199 CAGATTTTCCTGAAAACCCTTACGGGGAAGACCATCATCCTTGAGGCTGAACCCTCGGGT 1379140 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || | ||||||||||| || |||||||| ||||| || ||||| Sbjct 1379139 ACAATAGAAAATGTACAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATCAGCAG 1379080 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || || ||||||||| | ||| | | || || ||| | Sbjct 1379079 AGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGCACTTTGTCTGACTACAACATT 1379020 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || |||||||| |||||||| Sbjct 1379019 CAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 1378985 >seq1 Length=12736304 Score = 131 bits (144), Expect = 4e-25 Identities = 152/203 (75%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | |||||||||||||| || || || || || |||||||||||||| ||| Sbjct 12236889 AAAATGC---AGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAA 12236833 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||| || || || || || || || ||||||||||| || |||||||| ||||| Sbjct 12236832 CCCTCGGATACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCC- 12236774 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || ||||| |||| ||||| || || || || || ||||||||| | ||| | | || Sbjct 12236773 GATCAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTTTGTCTGAC 12236714 Query 178095 TATAACGTCCAAAAAGAATCAAC 178117 || ||| | ||||| || || || Sbjct 12236713 TACAACATTCAAAAGGAGTCTAC 12236691 >seq176 Length=2148545 Score = 116 bits (128), Expect = 9e-21 Identities = 151/205 (74%), Gaps = 8/205 (4%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 ||||| |||||| | || ||| |||| || || || | || || |||||||| |||| Sbjct 212213 AGGTTGAAATGC---AGATCTTCATGAAGACCCTGACCAGCAAGACCATCACCCTGGAGG 212269 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAA-GAAGGAA 178026 |||| || ||| |||||||||| || || || ||||| ||||| ||| || || | Sbjct 212270 TGGA--GCCCAGTGACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAAGGAGGGCA 212327 Query 178027 TCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTC 178086 |||| | |||||| | | || ||||| ||| | || ||||| |||||||| | |||| Sbjct 212328 TCCCCCATGACCAGGAGAGGCTCATCTTTGCCAGCAAGCAGCTGGAAGATGGCCGCACTC 212387 Query 178087 TTGCCGATTATAACGTCCAAAAAGA 178111 || | ||||| ||| |||| ||||| Sbjct 212388 TTTCTGATTACAACATCCAGAAAGA 212412 >seq304 Length=1579526 Score = 109 bits (120), Expect = 1e-18 Identities = 161/225 (72%), Gaps = 5/225 (2%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | |||||||||||||| || || | || ||||| || ||||| ||| Sbjct 417811 AAAATGC---AGATTTTCGTGAAAACCCTTACCAAGTAGACTATCACTCTTGAGGTTGAA 417755 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||| | || | || || || || ||||||||||| || |||| ||| |||| Sbjct 417754 CCCTCGGCTACAACAGAAAATGTAAAGGTCAAGATTCAGGATAAGGAAGAAATTCCTCGT 417695 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || ||||| |||| ||||| || || || || || | ||||| | | ||| ||| | || Sbjct 417694 GATCAGCAGAGACTGATCTTTGCTGGCAAGCAACTGGGAGATGAATGTACT-TTGTCCAT 417636 Query 178095 -TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || ||| | ||||| || || || || |||||||| |||||||| Sbjct 417635 CTACAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 417591 >seq203 Length=1941613 Score = 109 bits (120), Expect = 1e-18 Identities = 151/207 (73%), Gaps = 7/207 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || |||||||| || || || || || | |||||||||||||| | ||| || | Sbjct 1856178 CAGATCTTCGTGAAGACCCTGACGGGCAAGAACATCACCCTCGAGGTTG--AGCCCAGTG 1856121 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| |||||| || || || ||||| || | ||||| || ||||||| Sbjct 1856120 ACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGACATCCCGCCTGACCAGC 1856061 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || || || || || |||||||| |||| ||| | || || | || ||||| Sbjct 1856060 AGCGTCTGATTTTTGCGGGCAAACAGCTGGAAGCTGGCCGTACCCTGTCAGACTATAATA 1856001 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 ||| | ||| || || ||||| |||| Sbjct 1856000 TCC--AGAGAGTCCACCCTGCA-CTTG 1855977 >seq124 Length=2465673 Score = 95.1 bits (104), Expect = 3e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| || || || || || ||||| || ||||| ||| |||||| Sbjct 2104770 CAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACTCTTGAGGTTGAACCCTCAGAT 2104711 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||||||||| || |||||||| ||||| || |||| Sbjct 2104710 ACAATAGAAAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCTCCTGATGAGCAG 2104651 Query 178044 CGACTTATCT 178053 |||| |||| Sbjct 2104650 GGACTGATCT 2104641 >seq496 Length=1197557 Score = 93.3 bits (102), Expect = 1e-13 Identities = 145/205 (71%), Gaps = 3/205 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || | ||| || || || || || || ||||||||||||||||| | | ||| Sbjct 1032815 CAGATCTTTGAGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGCCCACTGAC 1032756 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||| ||||| |||||| || || |||||||| || || |||| || |||| || Sbjct 1032755 ACCACTGAGAATGTCAAAGCCAACATCCAGGACAAGGAGGGCATCCTGCCTGACCTGCTG 1032696 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || || | | || ||||||| |||||||| | ||| | |||| || || || Sbjct 1032695 CATCTGATTTCTGTGGGTGAACAGCTGGAAGATGGCGGCACTGT--CCGACTACAATATC 1032638 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || | ||| || || ||||| |||| Sbjct 1032637 CAGAGAGAGTCCACCCTGCA-CTTG 1032614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203473469488934