Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq23530 109 6e-19 seq15277 105 7e-18 >seq23530 Length=2024980 Score = 109 bits (120), Expect = 6e-19 Identities = 201/295 (68%), Gaps = 0/295 (0%) Strand=Plus/Plus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || || || |||| || ||||||||||| || |||||||| |||||||| || || Sbjct 954725 ATGTAAGTGTCAGTGAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 954784 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353 || || || ||| | |||||||||| || |||||||| | | || ||| | | Sbjct 954785 AAGCCATAGAAGTAACGGGCTTCCGTAATCTGAACTTCTTGGCTAAGCCGCTCCACCAAG 954844 Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATAT 17413 ||||| || || ||||| || || || || | || |||| | | | | |||||||| Sbjct 954845 TTTTCATTTACTATGCCATCACTTGCTGCAGAGAAAGCCAGAACACGTGAAGTGAAATAT 954904 Query 17414 TTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCG 17473 | || || || | || | ||||| || | || ||||| | ||||| || || Sbjct 954905 CTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCA 954964 Query 17474 GGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATT 17528 | ||||| || |||| | || || |||||| | ||||| |||| ||||| Sbjct 954965 GCTGTCCAGAAGGAAGCCTCCGCTTTCCTATACACCTGCCAAACATCACGGTATT 955019 >seq15277 Length=4737824 Score = 105 bits (116), Expect = 7e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 ||||||||||||| |||||||| || |||||||| | ||||||||| ||||||||| | Sbjct 3367420 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTT 3367479 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||||| || || || ||||||||||| || || || || | ||||| | Sbjct 3367480 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 3367539 Query 17106 C 17106 | Sbjct 3367540 C 3367540 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || || || ||||| || || |||||||| || ||||||||||||||||| || || Sbjct 3369383 ATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTCTCCATGGCAATTTGG 3369442 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331 || || || || || |||||||||| || |||||||| Sbjct 3369443 AAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTC 3369480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517346907774840