Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq23530 122 9e-23 seq20974 114 1e-20 seq15277 98.7 1e-15 >seq23530 Length=2024980 Score = 122 bits (134), Expect = 9e-23 Identities = 216/313 (69%), Gaps = 4/313 (1%) Strand=Plus/Plus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || || || ||| | || | |||||||||||| || |||||||| || ||||| || || Sbjct 954725 ATGTAAGTGTCAGTGAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 954784 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGG 16591 || ||||||||| | || || |||| || || ||||| | || || ||| ||| | Sbjct 954785 AAGCCATAGAAGTAACGGGCTTCCGTAATCTGAACTTCTTGGCTAAGCCGCTCCACCAAG 954844 Query 16592 TTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCC--AATATGTGCTTAATGAAAT 16649 || ||||| || || || |||||||| ||| | || ||| || | ||| | |||||| Sbjct 954845 TTTTCATTTACTATGCCATCACTTGCTGCAGAGAAAGCCAGAACACGTG--AAGTGAAAT 954902 Query 16650 ATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTT 16709 || | || |||| | || | ||| | | | || ||||| | ||||| || | Sbjct 954903 ATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCCT 954962 Query 16710 CTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTA 16769 | | ||||| ||| |||| | || || |||||| | ||||| |||| ||||| | Sbjct 954963 CAGCTGTCCAGAAGGAAGCCTCCGCTTTCCTATACACCTGCCAAACATCACGGTATTCCA 955022 Query 16770 TGGGAAATACGAC 16782 | ||||| | ||| Sbjct 955023 TAGGAAAGATGAC 955035 >seq20974 Length=1049469 Score = 114 bits (126), Expect = 1e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| ||||||||||| | || ||||| ||||| ||||| Sbjct 250903 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCT 250962 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| |||||||| || ||||| ||||| || || || |||| ||||| | Sbjct 250963 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 251022 Query 16344 C 16344 | Sbjct 251023 C 251023 Score = 84.2 bits (92), Expect = 2e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 15925 AACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAA 15984 ||| ||||| || ||||| || ||||| ||||||||||| || ||||||||||||||||| Sbjct 234139 AACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTTCCATAAAATCAAA 234198 Query 15985 GGGATT 15990 |||||| Sbjct 234199 GGGATT 234204 >seq15277 Length=4737824 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 ||||||||||| |||||||| |||||||| || | || ||||| ||||||||| || Sbjct 3367422 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTTTG 3367481 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||||| ||||| || || |||||||| || || || || | ||||| || Sbjct 3367482 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGC 3367540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511218061619160