Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq1322 289 3e-73 seq13862 181 1e-40 seq24272 168 8e-37 seq8154 129 7e-25 seq2791 120 4e-22 >seq1322 Length=1818447 Score = 289 bits (320), Expect = 3e-73 Identities = 267/338 (79%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | | |||| | ||||| ||||||||||||| Sbjct 1464252 AGCAGGGCTTCGATGTCAGGCTCGATGTCGATGGTCAGAAAGCGGCGGCTGTACCTGCGT 1464311 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 |||||| ||||| | ||||||| ||||||||||||||||||||| |||||||||||| Sbjct 1464312 ACGGGCACACCGTCTGGGCCCACCAGGAACTTCTCGAAGTTCCAGGCAACGTCGTTGCGG 1464371 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| |||||||||| |||| || |||||| ||| ||| | | |||||| ||| Sbjct 1464372 CACACCGGAGACCAGGTGATGAACTTGGGGTCTGTCATGAGGGCAGTGGCGTCGTCACTA 1464431 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 |||| ||||| ||||| || ||||| | |||||||||||| ||| | | || || ||| Sbjct 1464432 GGCGTGGGCAGAGCCTCCCGAAGGAAAGTGAAGAGCGGATGCGCCTTCTCGCCATTCACC 1464491 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 || ||||||||||||||||| ||||| |||||||| ||| || || || |||| ||| Sbjct 1464492 TCACACTTCTCGAAGAGCATGAAGTTGGGCTCGAACCCGCCGCCTGGTCGTACGTACTTG 1464551 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 ||| || || |||||| | |||| ||| |||||||| Sbjct 1464552 AGGCAATTCAGGATCTCCTCGTTCTTGGCATTTTCCTG 1464589 Score = 188 bits (208), Expect = 9e-43 Identities = 181/232 (78%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| |||||||| || ||||| ||||| ||||| | || |||| Sbjct 1464865 CCTGATGCCCAAACTGGTTGCACGGGAAGCCGAGCACGACCAGGCCCCGGGGCCCGAGGC 1464924 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||| || |||||||| ||||| |||||||| || | |||||||| ||||| | Sbjct 1464925 GCCGCTGCAGGTCATTCATCTGGGTGTAGTCCCGGACAGTTGTGCCTCAGAGCGACGCCA 1464984 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||| ||||||| ||| |||||| | | | |||||| ||||||| || || |||| Sbjct 1464985 CATTCTCAATGAGCAGTACCTTGCCCCGAAGGGACCCTAAGTTCACAGGCTCCCCGCCGG 1465044 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGATCTGGTCTCTGCCGCGGCAAG 83622 | ||| || || |||||||||||||| || | | | |||| || || || Sbjct 1465045 CCAGCGGACGCGCAGAGAAGGCGTACACCGAGCGCGGCGCTGCTGCCGCCAG 1465096 >seq13862 Length=6458357 Score = 181 bits (200), Expect = 1e-40 Identities = 262/370 (71%), Gaps = 11/370 (3%) Strand=Plus/Plus Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| |||||||||| |||| || ||||| | | ||| | | | || | || Sbjct 2120258 CACACCAGAGACCAGGCGATGAACTTGGGGTTGGCCCTGAGGGCAGTGGCGGCGACACTG 2120317 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 |||| ||||| ||||| || |||||| |||||||||| | ||| | || || ||| Sbjct 2120318 GGCGTGGGCAGAGCCTCGCGAAGGAAGACGAAGAGCGGGTACGCCTGCGAGCCATTCACC 2120377 Query 83297 TCGCACTTCTC--------GAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGA 83348 |||| |||||| ||||||||| ||||| |||||||| | || || || | || Sbjct 2120378 TCGCGCTTCTCCGCTCCTCGAAGAGCATGAAGTTGGGCTCGAACCTATTGCCTGGTCTGA 2120437 Query 83349 CGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGT 83408 ||| ||| ||| || || ||||||| || ||||||| ||||| || || ||| ||| Sbjct 2120438 CGTACTTGAGGCAATTCAGGATCTCG---TTTGGGGCGTTCTCCTGATGCCCAAACCGGT 2120494 Query 83409 TACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCA 83468 | || | ||| | ||||| ||||| || || | || ||||||||| |||| | |||| Sbjct 2120495 TGCAAGCGAAGCTGAGCACGACCAGGCCTCGGGGCCCGAGGCGCCGCCTCAGCACTTTCA 2120554 Query 83469 TCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGA 83528 ||| |||| ||| |||||| | |||| ||| || || | | ||| ||||||| | Sbjct 2120555 CCTGTGTGTCATCCTGGACCGCTGTGCCTCCGAGCGATGCCAACTCCTCAATGAGCAGGG 2120614 Query 83529 CCCGGCCCCG 83538 ||| |||||| Sbjct 2120615 CCCTGCCCCG 2120624 >seq24272 Length=5722674 Score = 168 bits (186), Expect = 8e-37 Identities = 244/343 (71%), Gaps = 5/343 (1%) Strand=Plus/Minus Query 83052 GGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACC 83111 |||| |||||| | |||| | | | ||| | | | |||||| | ||||| |||||||| Sbjct 3303853 GGGGCAGCAGGCCTTCGAAGGCAGCCTCGAGGTCGAGGGTCAGAAAGCGGCGGCTGTACG 3303794 Query 83112 TGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGT 83171 || |||||| | ||||| | ||||||| || ||||| |||||||||||| |||||| Sbjct 3303793 TGTGCACGG-CACACCGTCCGGGCCCACCAGGAGCTTCTGGAAGTTCCAGGCGACGTCGC 3303735 Query 83172 TGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGT 83231 |||||||||||||||||||||| | ||||| | ||||| ||||||| | ||||| Sbjct 3303734 TGCGGCACACTGGAGACCAGGCGAGGAGCTTGTGGTCGGTCACGAGGGCAGGGGCGTCGT 3303675 Query 83232 CGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGT 83291 | || |||| |||| ||||| | | |||||||||| | ||||| || |||| Sbjct 3303674 CACTGGGCGTGCGCAGCGCCTCGC----GGCGGCGAAGAGCCGGGGTGCCTGAGCGCCGT 3303619 Query 83292 TGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGT 83351 | |||||| ||| | | |||| | | | | |||||| ||| | || |||||| Sbjct 3303618 TCCCCTCGCCCTTGGCCAGGAGCCTGAGATCCAGCTCGAGCCCGCCGTCTGGTTGGACGT 3303559 Query 83352 GCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 | | ||| || ||||| |||||| ||| ||||| || Sbjct 3303558 ACCTGAGGCCCTTCAGCATCTCCTCATTCTTGGCATTTTCGTG 3303516 Score = 120 bits (132), Expect = 4e-22 Identities = 158/216 (73%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAG--CTCCTAG 83448 |||| || || ||||| || | || ||| || ||| | ||||| ||| | | | || || Sbjct 3303255 CCTGTTGCCCAAACTGCTTGCTCGCGAAGCCCAGCGCGACCAGGCCCGGGGGCCCCCGAG 3303196 Query 83449 G---CGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGA 83505 | |||||||||||||| |||||||| |||| ||| ||||| | | |||| ||| || Sbjct 3303195 GTGCCGCCGCTGCAGCTCATTCATCTGGGTGTGGTCCGGGACCATCTTGCCTCCGAGCGA 3303136 Query 83506 CGCTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCC 83565 ||| |||||||| |||||| || | |||| | | |||| | |||||| ||||| | Sbjct 3303135 CGCCACGTTCTCAGTGAGCAGCTCCTTGGCCCGCAGGGAGCCCAGGCTCACGGGTTCCTC 3303076 Query 83566 TCCGGTAATCGGGCGTGCTGAGAAGGCGTACACAGA 83601 ||||| | |||||| || ||| ||| | |||| || Sbjct 3303075 ACCGGTCAGCGGGCGCGCAGAGGAGG-GGACACGGA 3303041 >seq8154 Length=1028479 Score = 129 bits (142), Expect = 7e-25 Identities = 166/227 (73%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 83059 CAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGT---ACCTGCG 83115 |||||| || | || |||||||| | ||| ||| | | | |||||||| ||||| | Sbjct 252843 CAGGGCTTCAACGTTGGGCTCCATGTCCATGGTTAGAAAACAGTGGCTGTGCAACCTGTG 252902 Query 83116 CACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCG 83175 ||| ||| | || | ||||||||||||||||| ||||||||||||||||| ||| Sbjct 252903 CACAGGCACACTGTTGGGGCCCACCAAGAACTTCTCCAAGTTCCAGGCCACGTCACTGCA 252962 Query 83176 GCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCT 83235 |||||||| |||||||| | | ||| |||| | ||| ||| | | || ||| | Sbjct 252963 GCACACTGAAGACCAGGTGAAGTGCTTGGGGCCAGTCATGAGTGCAGGGACGTTGTCATT 253022 Query 83236 AGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCC 83282 | ||||||||| ||||| | | |||||| ||||| | ||||||| Sbjct 253023 GGACGCCGGCAGAGCCTCAGGAAAGAAGGC-AAGAGAGAGTGTGCCC 253068 >seq2791 Length=2825387 Score = 120 bits (132), Expect = 4e-22 Identities = 192/269 (71%), Gaps = 10/269 (4%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACGGCGCAAGCAG---GTCTATCTACAACTTCGCTGTGCGTAT 50466 ||| ||||||| || |||| |||||| ||| || |||||| || || | Sbjct 143641 GCAGCTGCGCAGCATCTACGA---AAGCAGCCTGTCCATTGGCAACTTTGCCTCACGCCT 143585 Query 50467 GCTCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTG 50526 ||||||| || |||| || |||||||| || |||||||||| || ||| | |||||| Sbjct 143584 GCTCGTGCACCTGTTCCCCGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACTG 143525 Query 50527 CTACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACT 50585 | ||||||| |||||||| |||| || |||||| ||| | | |||| |||| Sbjct 143524 CAGCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCGTCCCGCATCAAGCTCATCCGCCACT 143466 Query 50586 ATGTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAA-AGTTCCTG 50644 | |||||| |||| ||||| ||| || || ||||| |||| ||| ||||| || Sbjct 143465 ACGTGCAGCTGCTCTACCCGCGGGCCAAGAATGACCGCGTCTGGA-CACTGGAGTTCGTG 143407 Query 50645 GCGTGCCTGGACGAGCGCTGCCGGCGCCG 50673 | ||||||||||||||||||||||| Sbjct 143406 GGCAAACTGGACGAGCGCTGCCGGCGCCG 143378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608563075298520