Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq20241 122 7e-23 seq4839 122 7e-23 seq5365 111 1e-19 seq10790 91.5 1e-13 seq24420 84.2 2e-11 seq29157 82.4 6e-11 seq11056 82.4 6e-11 >seq20241 Length=2711202 Score = 122 bits (134), Expect = 7e-23 Identities = 163/226 (72%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| |||| || ||||| || || ||||| || || | | Sbjct 1753131 CCCCTC--AGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGA 1753188 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || || | || |||||||||||||| ||| | || || ||||||||||| ||| | Sbjct 1753189 GAGTGCGGCCATCTTCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGA 1753248 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||||||||| || |||||| ||||| | ||| || |||| ||||||| | Sbjct 1753249 TGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCT 1753308 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| ||| |||||||||||||| | || || || || || ||||| Sbjct 1753309 CCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1753354 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| || ||||| || || ||||| || || | || || || | || Sbjct 1753371 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCT 1753430 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||||||||| ||| | || || ||||||||||| ||| | ||||||||| || Sbjct 1753431 TCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCC 1753490 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | ||| || |||| ||||||| |||| ||| |||||| Sbjct 1753491 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1753550 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| | || || || || || ||||| Sbjct 1753551 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1753582 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| || ||||| || || ||||| || || | || || || | || Sbjct 1753599 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCT 1753658 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||||||||| ||| | || || ||||||||||| ||| | ||||||||| || Sbjct 1753659 TCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCC 1753718 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | ||| || |||| ||||||| |||| ||| |||||| Sbjct 1753719 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1753778 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| | || || || || || ||||| Sbjct 1753779 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1753810 Score = 102 bits (112), Expect = 7e-17 Identities = 155/219 (71%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| || ||||| || || ||||| || || | || || || | || Sbjct 1753827 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCT 1753886 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTC--CACGGGCACGCCTTCCTTGT 21081 |||||||||||||| ||| | || || ||||||||||| ||| | |||||| | | Sbjct 1753887 TCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGGGATGCCTTC--TAT 1753944 Query 21082 CGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGG 21141 | |||||| ||||| | ||| || |||| ||||||| |||| ||| |||| Sbjct 1753945 CCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGG 1754004 Query 21142 TCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 |||| ||||| | || || || || || |||||||||| Sbjct 1754005 TCTTACCGGTCAGGGTCTTCACGAAAATCTGCATTTTGA 1754043 >seq4839 Length=4080137 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| |||||| || || || ||||| ||||| | |||||| | | || Sbjct 529857 AGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 529798 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 ||||||||||| || ||| | || || ||||||||||| ||| | ||| |||||||| Sbjct 529797 TCCAGCTGTTTCCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 529738 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | ||| || |||| ||||||| |||| ||| |||||| Sbjct 529737 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 529678 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || ||||| | || || || || || ||||| Sbjct 529677 TTACCGGTCAGGGTCTTCACGAAGATCTGCAT 529646 Score = 116 bits (128), Expect = 3e-21 Identities = 162/226 (72%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| |||| || ||||| || || ||||| || || | | Sbjct 528957 CCCCTC--AGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAA 528900 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || || | || ||||||||||| || ||| |||| || ||||||||||| ||| | Sbjct 528899 GAGTGCGGCCATCTTCCAGCTGTTTCCCGGCAAAAATCAGCCTCTGCTGGTCAGGGGGGA 528840 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||| |||||||| |||||| ||||| | ||| || |||| ||||||| | Sbjct 528839 TGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCT 528780 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| ||| |||||||| ||||| | || || || || || ||||| Sbjct 528779 CCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 528734 Score = 116 bits (128), Expect = 3e-21 Identities = 162/226 (72%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| |||| || ||||| || || ||||| || || | | Sbjct 529185 CCCCTC--AGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAA 529128 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || || | || |||||||||||||||||| | || | ||||||||||| ||| | Sbjct 529127 GAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAAGATCAACCTCTGCTGGTCAGGGGGGA 529068 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||| |||||||| |||||| ||||| | ||| || |||| ||||||| | Sbjct 529067 TGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCT 529008 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| ||| |||||||| ||||| | || || || || || ||||| Sbjct 529007 CCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 528962 Score = 116 bits (128), Expect = 3e-21 Identities = 162/226 (72%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| |||| || ||||| || || ||||| || || | | Sbjct 529641 CCCCTC--AGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAA 529584 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || || | || |||||||||||||||||| | || | ||||||||||| ||| | Sbjct 529583 GAGTGCGGCCATCTTCCAGCTGTTTGCCCGCAAAGATCAACCTCTGCTGGTCAGGGGGGA 529524 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||| |||||||| |||||| ||||| | ||| || |||| ||||||| | Sbjct 529523 TGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCT 529464 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| ||| |||||||| ||||| | || || || || || ||||| Sbjct 529463 CCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 529418 Score = 113 bits (124), Expect = 4e-20 Identities = 161/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| |||| || ||||| || || ||||| || || | | Sbjct 529413 CCCCTC--AGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAA 529356 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || || | || ||||||||||| || ||| | || || ||||||||||| ||| | Sbjct 529355 GAGTGCGGCCATCTTCCAGCTGTTTCCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGGA 529296 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||| |||||||| |||||| ||||| | ||| || |||| ||||||| | Sbjct 529295 TGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCT 529236 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| ||| |||||||| ||||| | || || || || || ||||| Sbjct 529235 CCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 529190 Score = 105 bits (116), Expect = 6e-18 Identities = 160/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| |||| || ||||| || || ||||| ||||| | || Sbjct 528729 CCCCTC--AGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGACA 528672 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 |||| | | || ||||||||||| || ||| | || || ||||||||||| ||| | Sbjct 528671 GGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGA 528612 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||| || || || |||||| || || | ||| || |||| ||||||| | Sbjct 528611 TGCCCTCTTTTTCCTGGATCTTCCCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCT 528552 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||| || |||||||| || || || || || || || || |||||| Sbjct 528551 CCAGAGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCATT 528505 >seq5365 Length=1496801 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | ||||||| |||| ||||||||| | || || |||||||| | | Sbjct 701806 CCACCTCGCAGACGAAGCACCAAGTGCAGAGTGGACTCTTCCTGGATATTATAGTCTGAC 701865 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | |||| |||||||||||||| |||| || | |||||||| || | | Sbjct 701866 AGAGTGCGGCCATCCTTCAGCTGTTTGCCCGTGAAAATCAGACGCTGCTGGT-CAGGTGG 701924 Query 21069 AC-GCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 || ||| |||||||| ||| || ||| || | | || |||| |||||| | Sbjct 701925 ACTGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAGTGGTGTCACTGGGCTCGAT 701984 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||||||||| | || || || ||||| || ||||| Sbjct 701985 CTCTAGAGTGATGGTCTTGCCCATCAAGGTCTTCACAAAGATCTGCAT 702032 >seq10790 Length=2053270 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| |||| || ||||| || || ||||| || || | | || | |||| Sbjct 1303347 GAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAATAGTGCAGCCGTC 1303288 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 |||||||||||||| ||| | | || ||||||||||| ||| | |||||| || || Sbjct 1303287 TTCCAGCTGTTTGCCTGCAAACGTGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATC 1303228 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 |||||| ||||| | || || |||| ||||||| |||| ||| ||||| Sbjct 1303227 CTGGATCTTGGCCTTCACATTCTTGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 1303168 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||| || | || || | || || ||||| Sbjct 1303167 CTTGCCCGTCAGGGTCTTCCCGAAGATCTGCAT 1303135 >seq24420 Length=3268280 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/226 (69%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| || | || ||||| || || ||||| || || | | Sbjct 2497449 CCCCTC--AGACAGAGGACCAGGTGTAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAA 2497506 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || || | || |||| ||||||||| ||| | | || |||||||||| | ||| | Sbjct 2497507 GAGTGCGGCCATCTTCCATCTGTTTGCCTGCAAAGAGGAGCCTCTGCTGGT-CGGGGGGA 2497565 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 |||||| || || |||||| ||||| | |||| |||| |||||| | Sbjct 2497566 TGCCTTCTTTATCCTGGATCTTGGCCTTCACAT---TCTCAGTGTCACTGGGCTCTACCT 2497622 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| ||| |||||||||| ||| | || || || || || ||||| Sbjct 2497623 CCAGGGTGATGGTCTTGCAGGTCAGGGTCTTCACGAAGATCTGCAT 2497668 >seq29157 Length=6873498 Score = 82.4 bits (90), Expect = 6e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 |||||||||||||||||||| ||||| | || || ||| | |||||||| || ||||| Sbjct 2566408 GTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGGCCATCCTCCAGTTGCTTGCCA 2566467 Query 21039 GCATAAATAAGTCTCTGCTGGTC 21061 ||| | || ||||| |||||||| Sbjct 2566468 GCAAAGATCAGTCTTTGCTGGTC 2566490 >seq11056 Length=1110308 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || || | ||| ||| | ||||||||||||||||||||| ||||| | | Sbjct 356876 CCACCACGAAGTCTCAACACAGGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 356817 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | || ||| | || ||||| ||| | || ||||| |||||||| || Sbjct 356816 AGAGTACGTCCATCTTCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 356757 Query 21069 ACGCCTTCCTTGTCGGCGATCTT 21091 | ||||||||||| |||||| Sbjct 356756 ATTCCTTCCTTGTCCTGGATCTT 356734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422101142179508