Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_002166.1 Length=40751 Score E Sequences producing significant alignments: (Bits) Value seq19217 107 5e-19 seq14219 89.7 1e-13 >seq19217 Length=4307 Score = 107 bits (118), Expect = 5e-19 Identities = 330/504 (65%), Gaps = 10/504 (2%) Strand=Plus/Minus Query 11875 GATCCGTCACTGGATGAATGCAACGGAACGCTGACGGCCTGCAAACTTCGGTTCGGTGAA 11934 || ||| |||| || | ||||| || ||| || ||||||| | || || || || Sbjct 3889 GACCCGGCACTTGACCAGTGCAAGGGCTGCCTGTCGTCCTGCAAGTTGCGCTTTGGCGAG 3830 Query 11935 AACAACGAACTCTCGTTTGGTGGGTTCCCGGGTACGTCGCTGAT---CAGGAGTTGA-TA 11990 | |||||||||||| || ||||| ||||| | || ||||| | |||| ||| | Sbjct 3829 AGCAACGAACTCTCTTTCGGTGGATTCCCTGCCGTTTCTCTGATTGCCCGGAGCTGACCA 3770 Query 11991 TGCGTCAGAAAACCATCGATGCGATTATGGCGCATGCTGCAGCTGAATATCCTCGTGAGT 12050 |||| || | | ||||| || || || ||| || || || || || || |||| Sbjct 3769 TGCGCAAGCACATCATCGCGGCCATCCAGGTGCACGCGGCCGCCGAGTACCCGAAAGAGT 3710 Query 12051 GCTGCGGTGTGGTGGCACAGAAGAGCCGGGTAGAGAAATATTTTCCATGTCGTAACCTCG 12110 ||||||| || || | | | || | |||| || || || || | ||| ||| Sbjct 3709 GCTGCGGCCTGTTGCTAACCATCGGGCGAGCCCAGAAGTACTTCCCTTGCGGGAACATCG 3650 Query 12111 CTACCGAGCCGACAGAACATTTTCACCTGTCGCCAGAAGACTATGCAGCTGCTGAGGACT 12170 | | ||| ||| ||| | || | || || || |||||||| ||||| || ||| Sbjct 3649 CCATGGAGGCGAACGAAGAGTTCCGACTTGATCCCGAGGACTATGCCGCTGCGGAAGACC 3590 Query 12171 GGGGTACGGTGATCGCCATCGTTCACAGTCACCCTGACGCCACAACGCA-GCCG--AGCG 12227 |||| ||||||| |||||||||| ||||| ||||| || | ||| |||| | || Sbjct 3589 TGGGTGAAGTGATCGGCATCGTTCACTCGCACCCGGACGCTACCA-GCAGGCCGTCACCG 3531 Query 12228 AACTGGATAAAGCGCAATGCGACGCAACGCTTTTACCCTGGCATATTGTGAGCTGGCCGG 12287 || || || ||||| || ||| | |||||||| ||| | |||||| | Sbjct 3530 CAC--GACCTGGCCATGTGCGAGGCCACGGCGCTGCCCTGGCACATTCTCTCCTGGCCCG 3473 Query 12288 ATGGGGATTTACGCACCATCCAGCCGCGCGGAGAACTGCCACTGCTGGAGCGTCCGTTTG 12347 | || || | | || ||| |||| || | |||| ||||| |||| ||||||| Sbjct 3472 AAGGAGACCTCAGGACGATCACGCCGTCTGGCGCCGTGCCGCTGCTCAAGCGCCCGTTTG 3413 Query 12348 TGCTTGGACACTTCGACTGCTGGG 12371 | | |||| | ||||| |||| Sbjct 3412 TTCATGGAGTTTGGGACTGTTGGG 3389 >seq14219 Length=2704 Score = 89.7 bits (98), Expect = 1e-13 Identities = 146/211 (69%), Gaps = 6/211 (3%) Strand=Plus/Minus Query 15053 TTGATAAATGGACGCTTTATCAGGTTGCCCAGTATTGTGATCAGATGGTACCAGACGGCA 15112 ||||| ||| |||| |||| | | || ||||| || || |||||||| || ||||| | Sbjct 1673 TTGATCGCTGGTCGCTCTATCGGATCGCGCAGTACTGCGACCAGATGGTGCCGGACGGAA 1614 Query 15113 AAGGGGGCAACGGTACCGAACCACGTTATACCTGCAACGTGTACATCCAGGACCGAAACG 15172 | ||||||| | | ||||| | |||||||||| ||||| ||||| | | | | Sbjct 1613 AGGGGGGCATGG------AGCCACGCTTTACCTGCAACTTGTACTTCCAGAAGCAAGCTG 1560 Query 15173 ACGCTTATACAGTCCTGCGTGATTTTGCGGCCATATTCCGTGGCATGACGTACTGGGGAG 15232 | |||||| |||| || | || | || | || |||| ||| || | ||||||| | Sbjct 1559 AAGCTTATGCAGTGCTCCAGGACCTGGCCTCGATCTTCCACGGCCTGGCCTACTGGGACG 1500 Query 15233 GCGATCAGATCGTTGCTCTGGCCGATATGCC 15263 | |||||||| | ||||||||||| Sbjct 1499 GAAGCCAGATCGTGGTCAACGCCGATATGCC 1469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130234084101978