Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq15011 91.5 3e-13 >seq15011 Length=1793066 Score = 91.5 bits (100), Expect = 3e-13 Identities = 102/133 (77%), Gaps = 4/133 (3%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||| ||||| ||| | ||||| || |||||||| ||||||||| | || || || Sbjct 666682 GCATTTTTCGGAGCCCAGATGAATTCCTTCATCCATGTGATTATGTACTCATACTACGGG 666623 Query 52117 ATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTA 52174 | | || | ||| || ||| ||||||| |||||| ||||||||||| || || || | Sbjct 666622 TTAACTGCCTTTGGCCC-ATGGATTCAGAA-GTATCTTTGGTGGAAACGATACCTGACCA 666565 Query 52175 TAATGCAGTTGGT 52187 | ||||| |||| Sbjct 666564 TGCTGCAGCTGGT 666552 Score = 86.0 bits (94), Expect = 1e-11 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 51901 TGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATACTTAGG 51960 |||| ||||| ||| || ||||| || || || || || || |||||||| || || ||| Sbjct 667898 TGGTGGTACTTTATTTCTAAAGGAATTGAGTATTTTGACACAGTATTTTTTATCCTGAGG 667839 Query 51961 AAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTTACTCTA 52020 || ||| || || | || || || ||||||||||| | ||| |||||||| | Sbjct 667838 AAGAAAAACAACCAAATCTCCTTCCTTCATGTATATCATCACTGTACAATGTTTACATTG 667779 Query 52021 GGATGGATAGGTATTAAATGGTTTGCTGGAGGTCAGG 52057 | ||||| || ||||| ||| | || || || |||| Sbjct 667778 TGGTGGATTGGAATTAAGTGGGTCGCAGGGGGACAGG 667742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922842373208520