Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq4839 111 1e-19 seq20241 100 2e-16 seq5365 86.0 4e-12 >seq4839 Length=4080137 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| |||||||| | ||| ||||||||| ||||||||||| ||||| || | || Sbjct 529858 CAGGACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 529799 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| ||| || || || || ||||||| ||||||||| ||| | || ||||||||| Sbjct 529798 TTCCAGCTGTTTCCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 529739 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | | | || | || | | || || |||| |||||||| Sbjct 529738 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 529679 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || ||||| || || ||||| |||||||||||| Sbjct 529678 CTTACCGGTCAGGGTCTTCACGAAGATCTGCATC 529645 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || |||||||| |||||||| || || || ||| | || Sbjct 528945 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 528886 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||| || || || ||||| |||| ||||||||| ||| | || ||||||||| Sbjct 528885 TCCAGCTGTTTCCCGGCAAAAATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 528826 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | || | | || || |||| |||||||| Sbjct 528825 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 528766 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || ||||| || || ||||| |||||||||||| Sbjct 528765 TTACCGGTCAGGGTCTTCACGAAGATCTGCATC 528733 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || |||||||| |||||||| || || || ||| | || Sbjct 529401 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 529342 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||| || || || || ||||||| ||||||||| ||| | || ||||||||| Sbjct 529341 TCCAGCTGTTTCCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 529282 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | || | | || || |||| |||||||| Sbjct 529281 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 529222 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || ||||| || || ||||| |||||||||||| Sbjct 529221 TTACCGGTCAGGGTCTTCACGAAGATCTGCATC 529189 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || |||||||| |||||||| || || || ||| | || Sbjct 529173 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 529114 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||| ||||| || || || | || ||||||||| ||| | || ||||||||| Sbjct 529113 TCCAGCTGTTTGCCCGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 529054 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | || | | || || |||| |||||||| Sbjct 529053 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 528994 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || ||||| || || ||||| |||||||||||| Sbjct 528993 TTACCGGTCAGGGTCTTCACGAAGATCTGCATC 528961 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || |||||||| |||||||| || || || ||| | || Sbjct 529629 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 529570 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||| ||||| || || || | || ||||||||| ||| | || ||||||||| Sbjct 529569 TCCAGCTGTTTGCCCGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 529510 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | || | | || || |||| |||||||| Sbjct 529509 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 529450 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || ||||| || || ||||| |||||||||||| Sbjct 529449 TTACCGGTCAGGGTCTTCACGAAGATCTGCATC 529417 >seq20241 Length=2711202 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || |||||||| |||||||| || || || ||| | || Sbjct 1753143 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCT 1753202 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||| |||||||| || ||||||| ||||||||| ||| | || ||||| || Sbjct 1753203 TCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCC 1753262 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | || | | || || |||| |||||||| Sbjct 1753263 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1753322 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||||||| || || ||||| |||||||||||| Sbjct 1753323 TTGCCGGTCAGGGTCTTCACGAAGATCTGCATC 1753355 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || |||||||| |||||||| || || || ||| | || Sbjct 1753371 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCT 1753430 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||| |||||||| || ||||||| ||||||||| ||| | || ||||| || Sbjct 1753431 TCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCC 1753490 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | || | | || || |||| |||||||| Sbjct 1753491 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1753550 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||||||| || || ||||| |||||||||||| Sbjct 1753551 TTGCCGGTCAGGGTCTTCACGAAGATCTGCATC 1753583 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || |||||||| |||||||| || || || ||| | || Sbjct 1753599 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCT 1753658 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||| |||||||| || ||||||| ||||||||| ||| | || ||||| || Sbjct 1753659 TCCAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTATCC 1753718 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | || | | || || |||| |||||||| Sbjct 1753719 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 1753778 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||||||| || || ||||| |||||||||||| Sbjct 1753779 TTGCCGGTCAGGGTCTTCACGAAGATCTGCATC 1753811 >seq5365 Length=1496801 Score = 86.0 bits (94), Expect = 4e-12 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||| ||| | ||| |||| ||| || || ||||| ||| Sbjct 701806 CCACCTCGCAGACGAAGCACCAAGTGCAGAGTGGACTCTTCCTGGATATTATAGTCTGAC 701865 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || | || ||| ||||| | |||||| || ||||||||||| | | | Sbjct 701866 AGAGTGCGGCCATCCTTCAGCTGTTTGCCCGTGAAAATCAGACGCTGCTGGTC-AGGTGG 701924 Query 34283 AC-GCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 || || ||||||||| || ||| ||||| | || | | | || | | |||| Sbjct 701925 ACTGCCCTCCTTGTCTTGGAT-TTTAGCTTTGACATTCTCAGTGGTGTCACTGGGCTCGA 701983 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 || | |||||||| ||||| | | || |||||||||||||||||| || Sbjct 701984 TCTCTAGAGTGATGGTCTTGCCCATCAAGGTCTTCACAAAGATCTGCATCTCT 702036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322951069405280