Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq17315 2012 0.0 seq8192 100 2e-16 >seq17315 Length=6091571 Score = 2012 bits (2230), Expect = 0.0 Identities = 1479/1727 (86%), Gaps = 46/1727 (3%) Strand=Plus/Minus Query 107068 CCAG-TCCTAACTCCAGTCCCAGCATGACTAGCTGGTTTGCAGCATCAGGTTACAGATGT 107126 |||| |||| | |||| | ||||||||| ||||||| || || ||||| || ||| | Sbjct 3407431 CCAGATCCTGATTCCAATGCCAGCATGATCAGCTGGTCTGTAGTGTCAGGCTATAGACCT 3407372 Query 107127 CCATCCACAAG-------------GGTCTTAGGCAGGACTTGACTGAGGATATTTGTCTA 107173 ||||| || | || ||||||||||||||| ||||||| ||||||| Sbjct 3407371 CCATCAGTGAGCTGGGTGTATGAAGATCCTAGGCAGGACTTGACCGAGGATAGTTGTCTA 3407312 Query 107174 TAGAAGACATCTATCTTTACCATCACTCTGGAGTTGAACTTGATGTTC--------TG-- 107223 |||||| | |||| ||| |||||||| |||||||| ||||||||||| || Sbjct 3407311 GAGAAGAAACCTATTTTTGCCATCACTTTGGAGTTGCACTTGATGTTCCTTGAGCATGTT 3407252 Query 107224 ---GATTAGTTTGTAATTAAAGGCATTTTGTTCTGTCCAAGGATCTCCTCCTCCACCTTG 107280 | ||||||||||| | ||||||||||||||||||||||||| || |||||| |||| Sbjct 3407251 CCAGGTTAGTTTGTAACTGAAGGCATTTTGTTCTGTCCAAGGATTTCATCCTCCTCCTTC 3407192 Query 107281 CCTGTGCCCAAACTCTCCTGATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGC 107340 ||||||||| |||||| |||||||||| ||||||||||| ||||||||||||||| | Sbjct 3407191 CCTGTGCCCGAACTCTATCGATCTCCCATTCCATGAAGATGATTGGGTGGAAGAAGAAAC 3407132 Query 107341 TTTGCCGGGGACATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTC 107400 | ||| |||| ||||| ||||||||||||||||||||||||||||||||||||||| ||| Sbjct 3407131 TCTGCAGGGGGCATCACCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTGCTC 3407072 Query 107401 TGAGACTTTCCCTCAGGTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACT 107460 |||||||||| |||||||| |||||||| |||||||| |||||||||| |||||||||| Sbjct 3407071 TGAGACTTTCTCTCAGGTTAAAATGTGACATAGATTCCCTGGATCTGGAATCCAGGGACT 3407012 Query 107461 TCCAGAGTCAGCACTGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGAT 107520 | | || |||| |||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 3407011 TTCGAAGCCAGCGCTGTAGGGACATCTTGTACAAGTCCCTGAAGCTGCCAGCAAAGAGAT 3406952 Query 107521 CCATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAG 107580 ||||||||||||||||| |||| |||||||||||||||||||||||| |||| ||||| | Sbjct 3406951 CCATCAACTGTTCTGGGGTCACCCGAGGGGACCAGGAAGCAGTGGTCAAGGCTCTCCTGG 3406892 Query 107581 ACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAA 107640 |||| ||||| || ||||| |||||| |||| |||| | |||| |||||| |||||| | Sbjct 3406891 ACAATCTGGAGGTCAAGAAGAAGCGGGAGCCTTTCACAGACACCGATTACCACAACATGA 3406832 Query 107641 CCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAG 107700 ||||||| ||||||| || ||| ||||||||||||||||||||||||||||||| |||| Sbjct 3406831 CCAGAGATTGTGAGCAGTTTAAGTCCCAAAGGAAGTTCATACAGTTCCCACTGAGCAAAG 3406772 Query 107701 AAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTG 107760 ||||| ||||||||||||| || ||||| |||||||||||||||||||||||||| |||| Sbjct 3406771 AAGAGTTAGACTTCCCCATCGCATACTCTATGGTGGTCCATGAGAAGATTGAAAATTTTG 3406712 Query 107761 AACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGA 107820 |||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||| || Sbjct 3406711 AACGGCTGCTGCGAGCTGTGTATGCCCCTCAGAACATATACTGCGTCCATGTGGATGAGA 3406652 Query 107821 AGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCT 107880 |||||||||| |||||||||||||| |||| ||||||||||||||||||||| ||||||| Sbjct 3406651 AGTCCCCAGAAACTTTCAAAGAGGCAGTCAGGGCCATTATTTCCTGCTTCCCAAATGTCT 3406592 Query 107881 TCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACC 107940 ||||||||||||||||||||| ||||||||| |||||||||||||| ||||| ||||||| Sbjct 3406591 TCATGGCCAGTAAGTTGGTCCGGGTGGTTTACGCCTCCTGGTCCAGGGTGCAGGCTGACC 3406532 Query 107941 TGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACAT 108000 ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 3406531 TGAACTGTATGGAAGACTTGCTCCAGAGCTCGGTGCCATGGAAATACTTACTGAATACAT 3406472 Query 108001 GCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGA 108060 | |||||||| || || |||||||||||||| |||||||||||||||||||||||||||| Sbjct 3406471 GTGGGACAGATTTTCCTATAAAGACCAATGCTGAGATGGTCCTGGCCCTCAAGATGTTGA 3406412 Query 108061 AGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAAT 108120 | || ||||||||||||||||| ||| ||||| |||||| |||||| |||||||| || Sbjct 3406411 ATGGGAAGAACAGTATGGAGTCCGAGATACCTACTGAGTACAAAAAGTCTCGCTGGAGAT 3406352 Query 108121 ACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTG 108180 ||| ||||||||||||||||||| || ||| |||||||||||||||||||||||||||| Sbjct 3406351 ACCACTATGAGGTGACAGACACATTGCACCTAACCAGCAAGATGAAGGACCCTCCCCCTG 3406292 Query 108181 ATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAAC 108240 |||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 3406291 ATAACTTACCTGTGTTCACAGGGAATGCCTATTTTGTGGCTTCTCGAGCCTTTGTCCAAC 3406232 Query 108241 ATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCC 108300 |||||||||| ||||| ||||||||| ||||| | ||||||| |||||||||||||||| Sbjct 3406231 ATGTCTTAGAGAACCCCAAATCCCAACGACTGATCGAATGGGCAAAAGACACCTATAGCC 3406172 Query 108301 CCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTA 108360 |||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| || Sbjct 3406171 CCGATGAACACCTCTGGGCCACCCTTCAGCGTGCACCGTGGATGCCCGGCTCTGTCCCCT 3406112 Query 108361 GCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGT 108420 ||||||||||| |||||||||||||||| |||| |||||||| ||||| ||||||| Sbjct 3406111 ACCACCCCAAGTTTCACATCTCAGACATGTACACCATTGCCAGGCTGGTCAAATGGCAGT 3406052 Query 108421 ACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGA 108480 ||| |||||||| |||| |||||||| |||||||||| |||||||||||||| | | Sbjct 3406051 TCCATGAGGGAGACATCAGTATGGGGGCATCTTATGCACCTTGCTCTGGAATCCACCAGC 3405992 Query 108481 GGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCT 108540 |||| |||||||||| ||||| ||||||||| |||||||||| ||||| |||||||||| Sbjct 3405991 GGGCTGTCTGCATTTATGGGGCTGGGGACCTGCACTGGATTCTTCAGAATCATCACCTCT 3405932 Query 108541 TGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACC 108600 |||| |||||||| ||||| | |||||||||||| || |||||||||||||||||||| Sbjct 3405931 TGGCGAACAAGTTCGACCCAAAGGTGGATGATAATGTTCTGCAGTGCTTAGAAGAGTATT 3405872 Query 108601 TACGTCATAAGGCCATCTATGGGACTGAACTTTGAGCTGCACTGT--------------- 108645 ||||| ||||||||||||||||||||||||| |||| | ||| || Sbjct 3405871 TACGTTATAAGGCCATCTATGGGACTGAACTCTGAGATACACCGTGAGAGGATTGCTACC 3405812 Query 108646 ---GGGCCAGGGAC-TGTGCCAACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGG 108701 ||| |||| || ||| | ||| ||||||| | | |||| || |||||||||||| | Sbjct 3405811 CAAGGGGCAGGAACATGTACAAACGTGCCCAGAACATGCTGGGACAGTGTGGGGTGGGAG 3405752 Query 108702 ACGAGGGCTGTGGAATCCATGGCATCCCCCAGGGTCAGAGGGCTGCT 108748 || ||| || |||||||| ||||||| ||| ||||||| |||||||| Sbjct 3405751 ACCAGGCCTCTGGAATCCGTGGCATCTCCCTGGGTCAGGGGGCTGCT 3405705 >seq8192 Length=2942228 Score = 100 bits (110), Expect = 2e-16 Identities = 564/891 (63%), Gaps = 33/891 (4%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| ||| || || || || || || | ||||| ||| | || Sbjct 679835 CCGCTTAGTAAAGAAGAGGCAGAGTTTCCAATAGCATATTCTGTAGTGGTTCATCACAAA 679776 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||| ||| ||||| | ||| |||||||| | || || | Sbjct 679775 ATTGAAATGCTTGACAGGCTCCTGAGAGCCATTTATATGCCTCAGAATTTCTATTGCATT 679716 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 ||||||||| || || || | || | ||||| | | |||| ||||| Sbjct 679715 CACGTGGATACAAAATCAGAGGAATCCTTTTTGGCCGCGGTGATTGGCATTGCATCCTGT 679656 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||| |||||||| |||||||| || ||| || || ||||| || ||| | | Sbjct 679655 TTCAGTAATGTCTTTGTGGCCAGTCAGCTGGAGAGTGTTGTGTATGCATCTTGGAGCCGG 679596 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGC--CATGGAAGT 107985 || || |||||||| ||||| ||| | ||| | || | || | | || ||||||| Sbjct 679595 GTTCAGGCTGACCTCAACTGCATGCAGGACCT-CTACCGA-ATGAACGCAGACTGGAAGT 679538 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 |||| | ||| ||||| | || || || || || ||||| || || ||| | Sbjct 679537 ACTTGATAAATCTCTGCGGTATGGATTTTCCTATTAAAACCAACCTGGAAATTGTCAGGA 679478 Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAG---GTACCTTCTGAGTCCa 108102 |||||| ||| | ||| |||| | | || | ||| | || || | | Sbjct 679477 AGCTCAAGTCGTTAATGGGCGAGAATAACCTAGAAACGGAGAGAATGCCATCCAA---TA 679421 Query 108103 aaaaaaaTCGCTGGAAATACCGCTATG-AG--GTGACAGACACACTGTACCCTACCAGCA 108159 ||||| | | |||||| | | |||| || |||| | | || || | || Sbjct 679420 AAAAAGAAAGGTGGAAAAAGCATTATGCAGTCGTGAATGGAAAGTTG------ACAAACA 679367 Query 108160 AGATGAAGGAC------CCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATT 108213 | || ||| | ||| ||| | | ||| |||| |||| | |||||||| Sbjct 679366 TGGGGACCGACAAAATACATCCTCCTCTTGAAACACCTCTGTTTTCAGGCAGTGCCTATT 679307 Query 108214 TTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGG 108273 |||||| | | | | ||| | |||| | || || ||| |||| | Sbjct 679306 TTGTGGTCAGTAGGAGGTATGTGGAGTATGTGCTCGAGAATGAAAAAATACAAAAGTTTA 679247 Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333 | || |||| |||||||| || ||||| ||||| | ||||||||||| ||||| | | Sbjct 679246 TGGAGTGGGCAAAAGACACATACAGCCCGGACGAGTATCTCTGGGCCACTATTCAGAG-G 679188 Query 108334 CTCCGTGGA-TGCCTGGCTCTGT-TCCT--AGCCACCCCAAGTATCACATCTCAGACATG 108389 ||| | | | || || || | |||| ||||| ||||| | || || |||||| Sbjct 679187 ATCCCCGAAGTCCCAGGATCACTGTCCTTAAGCCA---TAAGTACGATATGTCCGACATG 679131 Query 108390 ACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCG 108449 || || |||||| | ||||||||||||||| || || || | || ||| || Sbjct 679130 CACGCAATTGCCAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGACATTTCCAAGGGCGCC 679071 Query 108450 CCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGAC 108509 || || | || ||| || ||||| | | || | || ||| ||| || || ||| Sbjct 679070 CCCTACCCGCCGTGCAGCGGCATCCACGTGCGCTCCGTGTGTGTTTTCGGAGCGGGTGAC 679011 Query 108510 CTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCG 108560 || ||||||| | | || ||| | || || |||||||| ||| || Sbjct 679010 TTGAACTGGATGTTGCGCGTGCACCACTTGTTCGCCAACAAGTTCGACACG 678960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348138437872962