Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq15277 120 3e-22 seq23530 96.9 3e-15 seq20974 82.4 7e-11 >seq15277 Length=4737824 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||| ||||| ||||||||||| || |||||||| | || ||||||| ||||||||||| Sbjct 3367420 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTT 3367479 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||| | || || || || |||||||| ||||| || ||||| ||||| | Sbjct 3367480 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 3367539 Query 14346 CTATTAATCGTTCTCC 14361 ||| | |||||||| Sbjct 3367540 CTACGACACGTTCTCC 3367555 Score = 96.9 bits (106), Expect = 3e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || ||||| | ||||| || | ||||| || |||||||||||||| || ||| Sbjct 3365732 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 3365791 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13993 |||||||| ||||| |||||||| |||||||||||| Sbjct 3365792 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTT 3365827 >seq23530 Length=2024980 Score = 96.9 bits (106), Expect = 3e-15 Identities = 239/361 (66%), Gaps = 4/361 (1%) Strand=Plus/Plus Query 14452 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 14511 |||| | ||||| | | | |||||| || ||| | || | || ||||||||||| || Sbjct 954703 TTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAGTGAGGAGACTGTACATTTCAGAATG 954762 Query 14512 TATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC 14571 |||||||||||| || || || || ||||| || | | ||||| | || || || Sbjct 954763 TATGTTTTCCATGGCAATTTGGAAGCCATAGAAGTAACGGGCTTCCGTAATCTGAACTTC 954822 Query 14572 TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGC 14631 | | || | || |||| |||||||| ||||| |||||||| |||||| | || || Sbjct 954823 TTGGCTAAGCCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAGAGAAAGC 954882 Query 14632 CAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAA-- 14689 || | | | | || ||| ||| ||| | || || ||| | ||| || Sbjct 954883 CAGAACACGTGAAGTGAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGT--GCTGAATG 954940 Query 14690 TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACATT 14749 ||||| ||||| || || || ||| ||||||| || ||| | ||||| |||||| Sbjct 954941 TCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAGAAGGAAGCCTCCGCTTTCCTATACACC 955000 Query 14750 ACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTTGAAGATGTTTCTTTAAGA 14809 ||| | || ||| |||||||| | ||||| | | | |||||||| ||| Sbjct 955001 TGCCAAACATCACGGTATTCCATAGGAAAGATGACAAAGCGGCAGGGGGTTTCTTTCAGA 955060 Query 14810 A 14810 | Sbjct 955061 A 955061 >seq20974 Length=1049469 Score = 82.4 bits (90), Expect = 7e-11 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATC-GTCTTTGTTAGAAATAACGCCCATTTT 13914 ||||||||| ||||||| | || |||||||| || || | | ||||| | | Sbjct 234068 TAAAAATCAGCATCTAAGGTGAAGACATTATCTGTAGTT-TCCGCCATAACTGCAAAACG 234126 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 |||||| || ||||| ||| |||||||| || ||||| || || | || || ||||| Sbjct 234127 TTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTTC 234186 Query 13975 CATAAAATCAAATGGATTT 13993 |||||||||||| |||||| Sbjct 234187 CATAAAATCAAAGGGATTT 234205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482160421494840