Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq11056 95.1 1e-14 seq2328 93.3 4e-14 seq15277 86.0 6e-12 seq14188 82.4 7e-11 seq451 82.4 7e-11 >seq11056 Length=1110308 Score = 95.1 bits (104), Expect = 1e-14 Identities = 158/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| ||||| || || || ||||| |||| || |||| Sbjct 356647 AATATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCAAACCC 356706 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGC--GGACAAGGAAGGCGTGCCGCCCG 31307 || || | | |||| || || | || | | |||||||||||| | || || | Sbjct 356707 TCGGATACAATAGAAAATGT--AATGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTG 356764 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGAT 31366 ||||||| | || || || |||||||| || |||||| | | | ||| || || Sbjct 356765 ACCAGCAAAGACTGATCTTTGCTGGCAAGCAACGGGAAGA-TGGACGTACTCTGTCTGAC 356823 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || ||||||||||| || || |||||||||| || | ||||| Sbjct 356824 TACAACATTCAAAAGGAGTCCACTCTTCATCCTGTGTTGAGACT 356867 >seq2328 Length=1860655 Score = 93.3 bits (102), Expect = 4e-14 Identities = 156/222 (70%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| ||||| || || || ||||| |||| || ||||| Sbjct 1240238 AATATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCC 1240179 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | |||| || || | || ||||||||||| | || || ||| Sbjct 1240178 TCAGATACAACAGAAAACGTAAAGGCCAAGATCCAGGACAAGGAAGTAATTCCTCCTGAC 1240119 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | || || || |||||||| || ||||||| | | | ||| || || || Sbjct 1240118 CAGCAA-GACTGATCTTTGCTGGCAAGCACCTGGAAGA-TGGACGTACTTTGTCTGACTA 1240061 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||| |||||| || || ||||||||||| || | ||||| Sbjct 1240060 CAACACTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 1240019 >seq15277 Length=4737824 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566 |||||||||||| || |||| || ||||| | |||||||| ||||| || ||||| | Sbjct 3370490 GATGAACCACTTCTGAAAGAAAACCCCCGCCGCTTTGTCATCTTTCCTATCGAATACCAT 3370431 Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTA 57623 || |||||| | ||||| || || || || || || |||||||| | || || ||| Sbjct 3370430 GATATTTGGCAGATGTATAAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAGGAGGTA 3370374 >seq14188 Length=5250308 Score = 82.4 bits (90), Expect = 7e-11 Identities = 153/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| ||||| || || || ||||| |||| || ||||| Sbjct 4004303 AATATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCC 4004244 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | || |||||||||||| | || || ||| Sbjct 4004243 TCGGATACAATAGAAAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGAC 4004184 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | || || || |||||||| | ||||||| | | | ||| || || | Sbjct 4004183 CAGCAAAGACTGATCTTTGCTGGCAAGTAACTGGAAGA-TGGACGTACTCTGTCTGACCA 4004125 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||| |||||| || || | |||| ||| || | ||||| Sbjct 4004124 CAACACTCAAAAGGAGTCCGCCCTTCGTCTTGTGTTGAGACT 4004083 >seq451 Length=5792110 Score = 82.4 bits (90), Expect = 7e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| ||||| || || || |||| |||| || ||||| || Sbjct 1082767 ATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCGTCACTCTCGAGGTCGAACCCTCG 1082826 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || || | || |||||||||||| | || || |||||| Sbjct 1082827 GATATGATAGAAAACGTAAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCAG 1082886 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || | | || || |||||||| || |||||| | | | ||| || || | || Sbjct 1082887 CAAAGACCGATCTTTGCTGGCAAGCAACGGGAAGA-TGGACGTACTCTGTCTGACCACAA 1082945 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || |||||| || || || |||||||| || | ||||| Sbjct 1082946 CACTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACT 1082984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445595264706960