Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_003278.1
Length=35580
Score E
Sequences producing significant alignments: (Bits) Value
seq12372 610 2e-170
>seq12372
Length=38393
Score = 610 bits (676), Expect = 2e-170
Identities = 818/1130 (72%), Gaps = 12/1130 (1%)
Strand=Plus/Plus
Query 31700 GGTCGGCAACGTCGAGGCCCATTGGGAATGCCTTGGTGGCATCGACGTGGACCCGGCCGG 31759
||| ||| || | |||| | ||| ||| |||| ||| |||| |||||| | | ||
Sbjct 34275 GGTTGGCCACCTGCAGGCAGAATGGCGCTGCATTGGCGGCGTCGATGTGGACGCCGGCGC 34334
Query 31760 CCTCCGCGACTTCGAGCGCCTGGCCGGTGTCCCGGGCACCCTGCTGGACCTGTTCACCCG 31819
|| ||||| ||||| ||| ||||||| || || || || | ||||||||||||||||
Sbjct 34335 GCTGCGCGATTTCGACCGCTTGGCCGGCGTACCAGGTACACAAATGGACCTGTTCACCCG 34394
Query 31820 CGACCAATACATCCGCTTCCATGGAACGGAGCCTCCCGCCGGTTGGCGGGAGGCAACCCC 31879
||| ||||||| | ||| ||||| | |||||| ||||||| ||||| ||||| || ||
Sbjct 34395 CGAGCAATACACCGCCTTTCATGGCAAGGAGCCGCCCGCCGACTGGCGAGAGGCTACGCC 34454
Query 31880 GGAGGAAATCCGCCGCGCCGCCGGCGGGCGCCGACCGGATGCCGTGTTCATCAGCTCGCC 31939
|| || || |||||||| || ||| | || |||| |||||||||||| ||
Sbjct 34455 GGCAGACATACGCCGCGCTGCGGGCTTCCAGGATCCCGATGTGGTGTTCATCAGCAGCCC 34514
Query 31940 CTGCAAAGGCGCCAGCGGCCTGCTGTCGGAGAAGATGAGCCTGACTCCGAAGTACCAGGC 31999
|||||| ||||| ||| || |||| ||| ||||||| || || || || |||||
Sbjct 34515 CTGCAAGGGCGCTTCTGGCTTGTTGTCCGAGGCTTTGAGCCTCACCCCCAAATATCAGGC 34574
Query 32000 GCTGAACGAGTTGACGCTGCGCTGCATCTGGCTGATGGGCGAGGCATGGGCTGATGACCC 32059
|| || || ||||| |||||||| | ||||| ||| |||| || ||| | ||||
Sbjct 34575 CCTCAATGAACTGACGTTGCGCTGCGTGTGGCTCATGTGCGAAGCCTGGCAGCACAACCC 34634
Query 32060 GGTGCCGCTGATCGTCTTCGAGAACGTCCCGCGTCTGGCGAGCCGCGGCCGGCACCTGCT 32119
|||| |||||||| |||||||| || || || ||||| | ||| || || ||||||||
Sbjct 34635 GGTGAGCCTGATCGTGTTCGAGAATGTGCCACGCCTGGCCACCCGTGGTCGCCACCTGCT 34694
Query 32120 GGACCAGATCAACAGCCTGCTCGGTGGCTTCGGCTACGCCGTGGCGGAAACCACTCACGA 32179
|| |||||| | |||| ||||||||| |||||| || || || |||||
Sbjct 34695 CGATCAGATCGTCCAGGTGCTGAACTTCTTCGGCTATGCCGTGAACGAGACAACCCACGA 34754
Query 32180 CTGCGGCGAGCTGGGCGGTCTGGCCCAGTCGCGGAAGCGCTTCCTGCTGGTGGCGCGGCA 32239
|||||| ||||||||||| ||||||| || |||||||||||| |||| || |||||
Sbjct 34755 CTGCGGGGAGCTGGGCGGGTTGGCCCAAAGCCGCAAGCGCTTCCTGTTGGTAGCCCGGCA 34814
Query 32240 CGTCGAGAAAGTGCCGCCCTTCCTGTACGAGCCGGAGAAGAAGAGCCTGCGCGCCGTCGG 32299
||||||||| |||||||| ||||| || ||||||||||| ||| ||||| | |||||
Sbjct 34815 CGTCGAGAAGGTGCCGCCGTTCCTCTATGAGCCGGAGAAAAAGTCCCTGCAATCGGTCGG 34874
Query 32300 CGACATCCTCGGCCGCATGCCGCTGCCCGGCGATATCGACGCCGCCGGCCCGATGCACCG 32359
| | | || ||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 34875 TGCCGTTCTTGGCCGCATGCCGCTGCCGGGCGATATCGAGCGCGCCGGCCCGATGCACCG 34934
Query 32360 TGTGCCATCCCTGCAGTGGAAGACCTGGGTTCGCCTGGCACTGGTGCGA-GCCGGCAGCG 32418
|| || | ||||| ||||| || ||||| ||||| || ||||| ||| ||||| | |
Sbjct 34935 CGTACCTGCACTGCAATGGAAAACGTGGGTACGCCTTGCCCTGGT-CGAGGCCGGTAAGG 34993
Query 32419 ACTGGCGCAGCCTGAACGACCTCGCCGTCGAGGACGGCTACCTGCGCGATCTGATCATCG 32478
||||||||||||| | | | ||| |||| || ||||||||||| || | | || |
Sbjct 34994 ACTGGCGCAGCCTCGATCAGTTGGCCATCGAAGATGGCTACCTGCGGGACTTTGTGATTG 35053
Query 32479 TCCCGAAATACCGGGCTGGCTACATGGGCGTGCACGGTTGGAACGA--CAGCACGGGCAC 32536
| ||| || | || || | ||||||| ||| ||| || ||| ||||||
Sbjct 35054 TGCCGGAAGCATTCTCCGGTTATCTCGGCGTGCGCGGCTGGGGTGATTCAG--TGGGCAC 35111
Query 32537 CATCGCCGGTCGCAGCAGCCCCACGAACGGCGCATTCTCTGTCGCGGACCCGCGCGCGCC 32596
||||||||| | ||||||| || |||||||| || ||||| || |||||| ||
Sbjct 35112 GGTCGCCGGTCAAACTGGCCCCACCAATGGCGCATTTTCCGTCGCAGATCCGCGCAGCCC 35171
Query 32597 GGCAAACGCCCTGCAATACCAGCAGTACGGCGTGCGCCGCTGGACCGACACCTCGGGCGC 32656
|| | ||| ||| ||||| || | ||||| || |||||| ||| | |||||
Sbjct 35172 AGCCAGTGCCGCGCAGTACCAACAACATGGCGTACGGCGCTGGGAGGACCCGAGCGGCGC 35231
Query 32657 CATCATCGGCGTCAAGTCGCCCGGCCAAGGCACGTACTCCGTCGCCGATCCCCGCGG-CC 32715
||||||||| |||||||||| || || ||||||| ||| || ||||| || || |
Sbjct 35232 AATCATCGGCATCAAGTCGCCAGGGCAGGGCACGTTTAGCGTGGCAGATCCGCGTGGTGC 35291
Query 32716 AG--AGTTTC---GGCAAGTACCCGGTCACCGACTGGGACGGCCCAGCCGGCACCGTGAT 32770
|| || | ||||| ||| || ||| |||||| || | || | || || ||
Sbjct 35292 AGCTGGTGGCCATGGCAAATACAACGTGACCCGCTGGGATGGTGCCGCACGTACGGTCAT 35351
Query 32771 CGCGGCCAGTACTACCGGCCAGGGTGCATTTGCTGTCGCGGACCCGCGCC 32820
|| | ||| || || || ||||| || ||||| || |||||| ||||
Sbjct 35352 TGCAGGCAGCACGACAGGGCAGGGCGCCTTTGCAGTACAGGACCCACGCC 35401
Score = 246 bits (272), Expect = 7e-61
Identities = 274/363 (75%), Gaps = 2/363 (1%)
Strand=Plus/Plus
Query 33003 GCCGGCGCGGTGTCGGCCAGTGCGCGGCACGACAACGGTCGATGGAGCGTGGCCGATCCG 33062
|||||||| || || ||||||||||| ||||| || || ||||||||||| ||||||
Sbjct 35476 GCCGGCGCTGTTTCCGCCAGTGCGCGCTTGGACAATGGCCGGTGGAGCGTGGCAGATCCG 35535
Query 33063 CGCATGCCGAAGGCGAACGACCGGCTGACCTGCATCATCCAGTCGCTGGATGGCACCTGG 33122
|| ||||| ||||| || ||| |||||||| | || ||| || || || ||||||
Sbjct 35536 CGTATGCCAGCCGCGAATGATCGGTTGACCTGCGTGATTCAGAGCCTCGACGGAACCTGG 35595
Query 33123 CACAGGCCGTTTACCACCCTGGAACTCGCCGCGCTGCAGAGCTTGGTCGACCCCGAAGAG 33182
||| |||| || |||||||||||| | ||||||||||| ||| |||||||||| || ||
Sbjct 35596 CACCGGCCATTCACCACCCTGGAAATGGCCGCGCTGCAAAGCCTGGTCGACCCGGAGGAA 35655
Query 33183 CAGTTGGTCCTCGACGGCCTGAGCGA-CAGCGACTGGCGCGAGCGGATCGGCAATGCGGT 33241
| | | || |||||| ||||||| ||| | ||||||||||||||||| ||||| ||
Sbjct 35656 ATGCTTGAGCTGGACGGCTTGAGCGATCAG-GCGTGGCGCGAGCGGATCGGTAATGCCGT 35714
Query 33242 TCCGCCGGCTGCGGCCGAGGCCATCGCCGGCGTGATGGGCACCACCCTGTTGTTGGCTGA 33301
||||| || ||||||||||| || ||||| |||| | ||||| || |||| |
Sbjct 35715 GCCGCCAAAAGCCGCCGAGGCCATTGCAGGCGTCATGGCCCAAACCCTCCTGCTGGCAAA 35774
Query 33302 GGCTGGCGAGACCTTCCTGCTCAGTAGCACGCCGATCTGGGTGCGTCAGGTCGCCGTTGG 33361
| ||||| |||||| ||||||| || |||| | ||||| || | || || || ||
Sbjct 35775 GCAGGGCGAAACCTTCTTGCTCAGCCACATGCCGGTGTGGGTACGACCTGTTGCGGTCGG 35834
Query 33362 ACT 33364
||
Sbjct 35835 CCT 35837
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 113692919145052
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |