Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_003278.1 Length=35580 Score E Sequences producing significant alignments: (Bits) Value seq12372 610 2e-170 >seq12372 Length=38393 Score = 610 bits (676), Expect = 2e-170 Identities = 818/1130 (72%), Gaps = 12/1130 (1%) Strand=Plus/Plus Query 31700 GGTCGGCAACGTCGAGGCCCATTGGGAATGCCTTGGTGGCATCGACGTGGACCCGGCCGG 31759 ||| ||| || | |||| | ||| ||| |||| ||| |||| |||||| | | || Sbjct 34275 GGTTGGCCACCTGCAGGCAGAATGGCGCTGCATTGGCGGCGTCGATGTGGACGCCGGCGC 34334 Query 31760 CCTCCGCGACTTCGAGCGCCTGGCCGGTGTCCCGGGCACCCTGCTGGACCTGTTCACCCG 31819 || ||||| ||||| ||| ||||||| || || || || | |||||||||||||||| Sbjct 34335 GCTGCGCGATTTCGACCGCTTGGCCGGCGTACCAGGTACACAAATGGACCTGTTCACCCG 34394 Query 31820 CGACCAATACATCCGCTTCCATGGAACGGAGCCTCCCGCCGGTTGGCGGGAGGCAACCCC 31879 ||| ||||||| | ||| ||||| | |||||| ||||||| ||||| ||||| || || Sbjct 34395 CGAGCAATACACCGCCTTTCATGGCAAGGAGCCGCCCGCCGACTGGCGAGAGGCTACGCC 34454 Query 31880 GGAGGAAATCCGCCGCGCCGCCGGCGGGCGCCGACCGGATGCCGTGTTCATCAGCTCGCC 31939 || || || |||||||| || ||| | || |||| |||||||||||| || Sbjct 34455 GGCAGACATACGCCGCGCTGCGGGCTTCCAGGATCCCGATGTGGTGTTCATCAGCAGCCC 34514 Query 31940 CTGCAAAGGCGCCAGCGGCCTGCTGTCGGAGAAGATGAGCCTGACTCCGAAGTACCAGGC 31999 |||||| ||||| ||| || |||| ||| ||||||| || || || || ||||| Sbjct 34515 CTGCAAGGGCGCTTCTGGCTTGTTGTCCGAGGCTTTGAGCCTCACCCCCAAATATCAGGC 34574 Query 32000 GCTGAACGAGTTGACGCTGCGCTGCATCTGGCTGATGGGCGAGGCATGGGCTGATGACCC 32059 || || || ||||| |||||||| | ||||| ||| |||| || ||| | |||| Sbjct 34575 CCTCAATGAACTGACGTTGCGCTGCGTGTGGCTCATGTGCGAAGCCTGGCAGCACAACCC 34634 Query 32060 GGTGCCGCTGATCGTCTTCGAGAACGTCCCGCGTCTGGCGAGCCGCGGCCGGCACCTGCT 32119 |||| |||||||| |||||||| || || || ||||| | ||| || || |||||||| Sbjct 34635 GGTGAGCCTGATCGTGTTCGAGAATGTGCCACGCCTGGCCACCCGTGGTCGCCACCTGCT 34694 Query 32120 GGACCAGATCAACAGCCTGCTCGGTGGCTTCGGCTACGCCGTGGCGGAAACCACTCACGA 32179 || |||||| | |||| ||||||||| |||||| || || || ||||| Sbjct 34695 CGATCAGATCGTCCAGGTGCTGAACTTCTTCGGCTATGCCGTGAACGAGACAACCCACGA 34754 Query 32180 CTGCGGCGAGCTGGGCGGTCTGGCCCAGTCGCGGAAGCGCTTCCTGCTGGTGGCGCGGCA 32239 |||||| ||||||||||| ||||||| || |||||||||||| |||| || ||||| Sbjct 34755 CTGCGGGGAGCTGGGCGGGTTGGCCCAAAGCCGCAAGCGCTTCCTGTTGGTAGCCCGGCA 34814 Query 32240 CGTCGAGAAAGTGCCGCCCTTCCTGTACGAGCCGGAGAAGAAGAGCCTGCGCGCCGTCGG 32299 ||||||||| |||||||| ||||| || ||||||||||| ||| ||||| | ||||| Sbjct 34815 CGTCGAGAAGGTGCCGCCGTTCCTCTATGAGCCGGAGAAAAAGTCCCTGCAATCGGTCGG 34874 Query 32300 CGACATCCTCGGCCGCATGCCGCTGCCCGGCGATATCGACGCCGCCGGCCCGATGCACCG 32359 | | | || ||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 34875 TGCCGTTCTTGGCCGCATGCCGCTGCCGGGCGATATCGAGCGCGCCGGCCCGATGCACCG 34934 Query 32360 TGTGCCATCCCTGCAGTGGAAGACCTGGGTTCGCCTGGCACTGGTGCGA-GCCGGCAGCG 32418 || || | ||||| ||||| || ||||| ||||| || ||||| ||| ||||| | | Sbjct 34935 CGTACCTGCACTGCAATGGAAAACGTGGGTACGCCTTGCCCTGGT-CGAGGCCGGTAAGG 34993 Query 32419 ACTGGCGCAGCCTGAACGACCTCGCCGTCGAGGACGGCTACCTGCGCGATCTGATCATCG 32478 ||||||||||||| | | | ||| |||| || ||||||||||| || | | || | Sbjct 34994 ACTGGCGCAGCCTCGATCAGTTGGCCATCGAAGATGGCTACCTGCGGGACTTTGTGATTG 35053 Query 32479 TCCCGAAATACCGGGCTGGCTACATGGGCGTGCACGGTTGGAACGA--CAGCACGGGCAC 32536 | ||| || | || || | ||||||| ||| ||| || ||| |||||| Sbjct 35054 TGCCGGAAGCATTCTCCGGTTATCTCGGCGTGCGCGGCTGGGGTGATTCAG--TGGGCAC 35111 Query 32537 CATCGCCGGTCGCAGCAGCCCCACGAACGGCGCATTCTCTGTCGCGGACCCGCGCGCGCC 32596 ||||||||| | ||||||| || |||||||| || ||||| || |||||| || Sbjct 35112 GGTCGCCGGTCAAACTGGCCCCACCAATGGCGCATTTTCCGTCGCAGATCCGCGCAGCCC 35171 Query 32597 GGCAAACGCCCTGCAATACCAGCAGTACGGCGTGCGCCGCTGGACCGACACCTCGGGCGC 32656 || | ||| ||| ||||| || | ||||| || |||||| ||| | ||||| Sbjct 35172 AGCCAGTGCCGCGCAGTACCAACAACATGGCGTACGGCGCTGGGAGGACCCGAGCGGCGC 35231 Query 32657 CATCATCGGCGTCAAGTCGCCCGGCCAAGGCACGTACTCCGTCGCCGATCCCCGCGG-CC 32715 ||||||||| |||||||||| || || ||||||| ||| || ||||| || || | Sbjct 35232 AATCATCGGCATCAAGTCGCCAGGGCAGGGCACGTTTAGCGTGGCAGATCCGCGTGGTGC 35291 Query 32716 AG--AGTTTC---GGCAAGTACCCGGTCACCGACTGGGACGGCCCAGCCGGCACCGTGAT 32770 || || | ||||| ||| || ||| |||||| || | || | || || || Sbjct 35292 AGCTGGTGGCCATGGCAAATACAACGTGACCCGCTGGGATGGTGCCGCACGTACGGTCAT 35351 Query 32771 CGCGGCCAGTACTACCGGCCAGGGTGCATTTGCTGTCGCGGACCCGCGCC 32820 || | ||| || || || ||||| || ||||| || |||||| |||| Sbjct 35352 TGCAGGCAGCACGACAGGGCAGGGCGCCTTTGCAGTACAGGACCCACGCC 35401 Score = 246 bits (272), Expect = 7e-61 Identities = 274/363 (75%), Gaps = 2/363 (1%) Strand=Plus/Plus Query 33003 GCCGGCGCGGTGTCGGCCAGTGCGCGGCACGACAACGGTCGATGGAGCGTGGCCGATCCG 33062 |||||||| || || ||||||||||| ||||| || || ||||||||||| |||||| Sbjct 35476 GCCGGCGCTGTTTCCGCCAGTGCGCGCTTGGACAATGGCCGGTGGAGCGTGGCAGATCCG 35535 Query 33063 CGCATGCCGAAGGCGAACGACCGGCTGACCTGCATCATCCAGTCGCTGGATGGCACCTGG 33122 || ||||| ||||| || ||| |||||||| | || ||| || || || |||||| Sbjct 35536 CGTATGCCAGCCGCGAATGATCGGTTGACCTGCGTGATTCAGAGCCTCGACGGAACCTGG 35595 Query 33123 CACAGGCCGTTTACCACCCTGGAACTCGCCGCGCTGCAGAGCTTGGTCGACCCCGAAGAG 33182 ||| |||| || |||||||||||| | ||||||||||| ||| |||||||||| || || Sbjct 35596 CACCGGCCATTCACCACCCTGGAAATGGCCGCGCTGCAAAGCCTGGTCGACCCGGAGGAA 35655 Query 33183 CAGTTGGTCCTCGACGGCCTGAGCGA-CAGCGACTGGCGCGAGCGGATCGGCAATGCGGT 33241 | | | || |||||| ||||||| ||| | ||||||||||||||||| ||||| || Sbjct 35656 ATGCTTGAGCTGGACGGCTTGAGCGATCAG-GCGTGGCGCGAGCGGATCGGTAATGCCGT 35714 Query 33242 TCCGCCGGCTGCGGCCGAGGCCATCGCCGGCGTGATGGGCACCACCCTGTTGTTGGCTGA 33301 ||||| || ||||||||||| || ||||| |||| | ||||| || |||| | Sbjct 35715 GCCGCCAAAAGCCGCCGAGGCCATTGCAGGCGTCATGGCCCAAACCCTCCTGCTGGCAAA 35774 Query 33302 GGCTGGCGAGACCTTCCTGCTCAGTAGCACGCCGATCTGGGTGCGTCAGGTCGCCGTTGG 33361 | ||||| |||||| ||||||| || |||| | ||||| || | || || || || Sbjct 35775 GCAGGGCGAAACCTTCTTGCTCAGCCACATGCCGGTGTGGGTACGACCTGTTGCGGTCGG 35834 Query 33362 ACT 33364 || Sbjct 35835 CCT 35837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113692919145052