Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq14219 109 2e-19 seq14566 102 3e-17 seq8680 86.0 2e-12 >seq14219 Length=2704 Score = 109 bits (120), Expect = 2e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 17962 GGCACTTGGGATGGCACGTTCAAGGCAGCATGGACGAACAATCCAGCTTGGGTCTACTAC 18021 |||| |||||||||||| ||||| | || | || ||||| || || ||| ||| |||| Sbjct 1788 GGCATTTGGGATGGCACATTCAAAGAGGCCTATACCAACAACCCGGCCTGGATCTTCTAC 1729 Query 18022 GGCCTACTGCTCGACAAGCTCAACGGATTGGGCGACCGTGTCGATGCGTCGATGGTCGAC 18081 | | | |||| || | |||| | |||||||| |||| || | ||||| || Sbjct 1728 GACTTGGTGCTGCACCCATACTACGGCCTCGGCGACCGCATCGACGCAACAATGGTTGAT 1669 Query 18082 AAGTGGGCGCTGTACGCAATCGCGCGTCACTGTGACGAGCTGGTATCGGACGGGAAGGGC 18141 ||| |||| || ||||||| |||| ||| || |||| ||||||| ||||| Sbjct 1668 CGCTGGTCGCTCTATCGGATCGCGCAGTACTGCGACCAGATGGTGCCGGACGGAAAGGGG 1609 Query 18142 GGCAAGGAGCCGCGCTTTACGTGCAACT 18169 |||| |||||| |||||||| ||||||| Sbjct 1608 GGCATGGAGCCACGCTTTACCTGCAACT 1581 >seq14566 Length=1101 Score = 102 bits (112), Expect = 3e-17 Identities = 154/214 (72%), Gaps = 5/214 (2%) Strand=Plus/Minus Query 43839 AAAGATCTGATGGGCCAG--CCGTGGCGTCTTGCGTTTGCATTGCAGGATGCCGGCTGGT 43896 ||||| |||||||| || ||||| || || || || | || |||| ||||||| Sbjct 637 AAAGACTTGATGGGCATATTCCCTGGCGCCTCGCCTTCGCCCTTCAAGATGATGGCTGGT 578 Query 43897 ATCTCCGACAGGACATCATCTGGCACAAGCCGAACCCGATGCCCGAGAGCGTGCGCGACC 43956 | || || || |||||||| |||||||||||||| |||||||| || | | |||| Sbjct 577 ACCTGCGCCAAGACATCATTTGGCACAAGCCGAATCCGATGCCTGAATCCACCAGGGACC 518 Query 43957 GCTGCACTAAGGCACACGAATATCTGTTTCTGCTTTCG-AAGAGCGAGCGCTACTACTAC 44015 | ||||| || || ||||| || |||||||| ||| | ||| ||||| ||||| Sbjct 517 GGTGCACAAAAGCGCACGAGTACCTGTTTCT-CTTGAGCAAGTCACCACGCTATTACTAT 459 Query 44016 GACTTCCACGCGATGCAGGAGCCTGTGAGCGGTG 44049 ||| | ||||| |||||||||| |||| || Sbjct 458 GACCAGGATGCGATCAAGGAGCCTGT-AGCGCTG 426 >seq8680 Length=3046 Score = 86.0 bits (94), Expect = 2e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 25826 TTCGGCGCCCCGACGTGGTGATTGTCAAGGACGGATCTCTGCCGCCAACTCAGGACAACA 25885 |||| || ||||| |||||||| |||||||||| |||||||||||||||||||| Sbjct 1582 TTCGCCGGCCCGATGTGGTGATCGTCAAGGACGCCAGCAAGCCGCCAACTCAGGACAACA 1523 Query 25886 TCAAGAGCGTGGTGGAGATTAAATTCCCGCCT 25917 ||||| ||||||||||| || || || ||| Sbjct 1522 TCAAGCAAGTGGTGGAGATGAAGTTTCCACCT 1491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170609753041510