Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq23530 174 2e-38 seq20687 134 2e-26 seq3100 129 7e-25 seq15277 123 3e-23 seq20974 98.7 1e-15 seq12120 91.5 2e-13 >seq23530 Length=2024980 Score = 174 bits (192), Expect = 2e-38 Identities = 275/393 (70%), Gaps = 1/393 (0%) Strand=Plus/Plus Query 33771 GCCCAATCGGCCTT-CTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtt 33829 |||||||| ||||| ||| |||||||||||| | || || | ||| || ||||| | | Sbjct 954646 GCCCAATCTGCCTTTCTTCTTTACACAAGGCGTTGTCTCAACGGCGTTGAAGAGGAATTC 954705 Query 33830 tttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAAT 33889 |||| || |||||||| ||||| || | | ||||| |||||||| ||||| || Sbjct 954706 CCTTTCTTTGGAATCTTTAATGTAAGTGTCAGTGAGGAGACTGTACATTTCAGAATGTAT 954765 Query 33890 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGT 33949 |||||| ||||| || || || || ||||| | | || || |||||||| |||||| Sbjct 954766 GTTTTCCATGGCAATTTGGAAGCCATAGAAGTAACGGGCTTCCGTAATCTGAACTTCTTG 954825 Query 33950 ACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAA 34009 | || || || | || |||||||| ||||| |||||||| |||||| | || |||| Sbjct 954826 GCTAAGCCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAGAGAAAGCCAG 954885 Query 34010 TACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTT 34069 ||| || | |||||| | || || || | || | ||| | | || || || Sbjct 954886 AACACGTGAAGTGAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTT 954945 Query 34070 AGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCA 34129 || | ||||| || || ||||||| || || ||||| || || |||||| | ||| Sbjct 954946 GGAAAGGTCCACCTCCTCAGCTGTCCAGAAGGAAGCCTCCGCTTTCCTATACACCTGCCA 955005 Query 34130 GATGTCATGATATTGGATTGGGAAAATAACAAA 34162 | ||| | |||| || || || || ||||| Sbjct 955006 AACATCACGGTATTCCATAGGAAAGATGACAAA 955038 >seq20687 Length=1308170 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 999338 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 999279 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 999278 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAA 999219 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 999218 CTGTTTCTTACACCATA 999202 Score = 100 bits (110), Expect = 4e-16 Identities = 129/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 |||| || |||||||| || | || || || | || ||| || || || || || || | Sbjct 994459 CATAGGTTTCATATGGGCCATACTCCTTGGCCAATTCACAGCTGGCTTCCAAGGCTCCAT 994400 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 ||||||||||||||||||||| |||||| | || || ||||| || ||||| || | Sbjct 994399 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCCGGACTCTCAAAAGGGT 994340 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATG 62803 | | | |||||||| || || || | ||||| || ||||| || || || | ||| Sbjct 994339 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATG 994282 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||||||||| |||||||| ||||||||||| || | || || || || | | Sbjct 989763 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAGAGGTCCCTGGCACG 989704 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 || || || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 989703 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 989644 Query 63383 CGGTTCCAAGTATATGGC 63400 || |||| ||| ||||| Sbjct 989643 AGGCTCCAGGTAAATGGC 989626 Score = 89.7 bits (98), Expect = 6e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 63642 CTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63701 ||||| | ||| | || | || || ||||| || | || ||||| || ||||||||| Sbjct 981583 CTAGAAAGTTGTGGGCGGTTGGTGCCAGCATTGAAGAGAGTGGGAGAGGCATGCGTAAAC 981524 Query 63702 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63761 || | |||||||| || ||||| || |||||||| | || ||||| || || || Sbjct 981523 CACCTCTCAGAAAGAAGGTTGTATGTTTCAATAGCAGCATCAATATCTTCTTTGTGGATG 981464 Query 63762 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63800 || || | || | ||| ||||| ||||| ||||||||| Sbjct 981463 CCCACAGATACCCTCATCAACATATGCTGTGGTCTTTCA 981425 >seq3100 Length=2334019 Score = 129 bits (142), Expect = 7e-25 Identities = 100/119 (84%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| || ||| ||| | |||||||| || ||||||||||||| ||| Sbjct 1910585 GTTACTTTCTATGATGTGCATATTGTTCTGCAAGCTTTTATACTGACTACTGCAGTATTT 1910526 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| | ||||| ||||||| ||||||| |||||||||||||| ||| ||| | |||| Sbjct 1910525 CTTGGTTTGACTGTATGTACTGTACAATCTAAGAGAGATTTCAGCAAATTTGGAGCAGG 1910467 Score = 100 bits (110), Expect = 4e-16 Identities = 64/70 (91%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231 ||||||||||||||||||||||||||||||| ||||| ||||| || |||||||||||| Sbjct 1923879 TGCTCCTCCATCGAGGACGACTTCAACTATGGCAGCTGCGTGGCCTCCGCCAGCGTGCAC 1923820 Query 188232 ATACGAATGG 188241 || ||||||| Sbjct 1923819 ATCCGAATGG 1923810 >seq15277 Length=4737824 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| ||||| | ||| || ||||| ||||| |||||||| || || || |||| Sbjct 3367420 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTT 3367479 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || || || || || ||||||||||||||||| ||||| ||||||| Sbjct 3367480 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 3367539 Query 33724 C 33724 | Sbjct 3367540 C 3367540 Score = 93.3 bits (102), Expect = 5e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||||| ||||| || || | |||||||||||||| ||||| ||||| || ||||| Sbjct 3369376 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTCTCCATGGC 3369435 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 || || || || |||||||| | || || |||||||| |||||| Sbjct 3369436 AATTTGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTCT 3369481 >seq20974 Length=1049469 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| || || | ||| || ||||| || ||||| ||||| || || | || || Sbjct 250905 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCTTT 250964 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 ||||| ||||| | ||| || ||||| || ||||| ||||||||||| ||||||||||| Sbjct 250965 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 251023 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025 |||||||||||||| ||||||||||||||||||||||| || || | || |||||| Sbjct 255297 AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAGATAAAA 255356 Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCAC 34081 || || || |||| | | || || ||||| | | || |||||| |||| ||| || Sbjct 255357 TACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGGAGATCTTTTGATAAATCAAC 255412 >seq12120 Length=1614126 Score = 91.5 bits (100), Expect = 2e-13 Identities = 176/257 (68%), Gaps = 7/257 (3%) Strand=Plus/Minus Query 31299 TCCTGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 31356 ||| || || ||||| ||| ||| | ||| | ||| ||||| | ||| ||||| Sbjct 1445337 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCAGTGTC--ATCTAAAACTTGAACTTCC 1445280 Query 31357 TCAAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCAGTATTT 31416 || | |||||| ||| |||| |||| | | || ||||| || ||| ||| || | || Sbjct 1445279 TCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAGTTCGATCACCCTTTTTG 1445220 Query 31417 ACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCT 31476 || | | | | ||| ||| ||||| || | || || | ||||| ||||||||| Sbjct 1445219 ACTTCGAGCTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCT 1445160 Query 31477 TCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGACCTAGGA 31533 || ||||| ||||| |||||| ||| || | |||| | || ||||| | ||| Sbjct 1445159 TCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGA 1445100 Query 31534 GCTATTCTACCATAGCA 31550 |||| ||| |||||||| Sbjct 1445099 GCTACTCTCCCATAGCA 1445083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629575805150640