Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_003315.1 Length=31508 Score E Sequences producing significant alignments: (Bits) Value seq15183 96.9 7e-16 seq15155 96.9 7e-16 seq21746 93.3 8e-15 seq24349 80.6 5e-11 >seq15183 Length=4839 Score = 96.9 bits (106), Expect = 7e-16 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 357 TTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACC 416 |||||||||||| || |||||| ||||||||||||||||||||||||||||||| Sbjct 1329 TTGGTGGGTCGTCCGCGACTCGAACGCGGGACCAACGGATTAAAAGTCCGCTGCTCTACC 1388 Query 417 GACTGAGCTAACGACCCA 434 ||||||||||||||||| Sbjct 1389 AACTGAGCTAACGACCCA 1406 Score = 95.1 bits (104), Expect = 2e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 358 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 417 ||||||||||| || |||||| ||||||||||||||||||||||||||||||| Sbjct 1466 TGGTGGGTCGTCCGCGACTCGAACGCGGGACCAACGGATTAAAAGTCCGCTGCTCTACCA 1525 Query 418 ACTGAGCTAACGACCCA 434 ||||||||||||||||| Sbjct 1526 ACTGAGCTAACGACCCA 1542 Score = 93.3 bits (102), Expect = 8e-15 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 358 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 417 ||||||||||| || |||||| ||||||||||||||||||||||||||||||| Sbjct 1602 TGGTGGGTCGTCCGCGACTCGAACGCGGGACCAACGGATTAAAAGTCCGCTGCTCTACCA 1661 Query 418 ACTGAGCTAACGACCC 433 |||||||||||||||| Sbjct 1662 ACTGAGCTAACGACCC 1677 >seq15155 Length=4091 Score = 96.9 bits (106), Expect = 7e-16 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 358 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 417 |||||||||||| |||||||||||| ||||||| | ||||||| | |||||||||| Sbjct 2581 TGGTGGGTCGTGTGGGATTCGAACCTACGACCAATTGGTTAAAAGCCAACTGCTCTACCA 2522 Query 418 ACTGAGCTAACGACCCAATTA 438 |||||||||||||||||| || Sbjct 2521 ACTGAGCTAACGACCCAAATA 2501 >seq21746 Length=2732 Score = 93.3 bits (102), Expect = 8e-15 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 358 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 417 |||||||||||| |||||||||||| ||||||| | ||||||| | |||||||||| Sbjct 1445 TGGTGGGTCGTGTGGGATTCGAACCTACGACCAATTGGTTAAAAGCCAACTGCTCTACCA 1504 Query 418 ACTGAGCTAACGACCC 433 |||||||||||||||| Sbjct 1505 ACTGAGCTAACGACCC 1520 >seq24349 Length=209 Score = 80.6 bits (88), Expect = 5e-11 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 357 TTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACC 416 |||||||| || ||||||||||||||| |||| | |||||| |||| |||||||||| Sbjct 72 TTGGTGGGCTGTCAAGGATTCGAACCTTGGACCTATTGATTAAGAGTCAACTGCTCTACC 13 Query 417 GACTGAGCTAAC 428 ||||||||||| Sbjct 12 AACTGAGCTAAC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 100667271551820