Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_003324.1 Length=57416 Score E Sequences producing significant alignments: (Bits) Value seq12372 313 9e-81 >seq12372 Length=38393 Score = 313 bits (346), Expect = 9e-81 Identities = 587/857 (68%), Gaps = 17/857 (2%) Strand=Plus/Minus Query 43158 GGCATAATGCCAAAGTCCCGCAGGTTGCCGTCCTCGACGGCGAGCTTGTTGAGCGAGCGC 43217 |||| ||| ||||||||||||||| ||| || |||| ||| | || | ||| |||| Sbjct 35057 GGCACAATCACAAAGTCCCGCAGGTAGCCATCTTCGATGGCCAACTGATCGAGGCTGCGC 34998 Query 43218 CAATCCGAGCCAGCCTCGACGAAGGCAAGGCGCACCCACGTCTTCCACTGCAGCGAAGGA 43277 || ||| || |||||||| | ||||||||| |||||||| ||||| ||||| | ||| Sbjct 34997 CAGTCCTTACCGGCCTCGACCAGGGCAAGGCGTACCCACGTTTTCCATTGCAGTGCAGGT 34938 Query 43278 ACACGATGTAGGGGGCCGCCT-GCAGGGT--CGCCTGGCAGCGGCAGTTTCTCAAGGATT 43334 || || || | |||||| | || | | |||| |||||||||| |||| | Sbjct 34937 ACGCGGTGCATCGGGCCGGCGCGCTCGATATCGCCCGGCAGCGGCATGCGGCCAAGAACG 34878 Query 43335 TCGCCGACGCCTCGCAGGCGCTTCTTTTCGGGCTCGTAAAGGAACGGAGGCACAGTCGGT 43394 | ||||| | ||||| ||| || || ||||| || |||||||| ||||| || Sbjct 34877 GCACCGACCGATTGCAGGGACTTTTTCTCCGGCTCATAGAGGAACGGCGGCACCTTCTCG 34818 Query 43395 TCGTGGCGCGCAACAAGCAGGAAGCGCTTGCGGCTCTGACCCAAACCGCCGATCTGACCG 43454 |||| || || || | |||||||||||||||||| || |||| ||||| | || ||| Sbjct 34817 ACGTGCCGGGCTACCAACAGGAAGCGCTTGCGGCTTTGGGCCAACCCGCCCAGCTCCCCG 34758 Query 43455 CAGTCGTGGGTGGTCTCGGCGACGGC------GAAATTGTAGCTCCGCAGCAGGGCAATG 43508 ||||||||||| |||||| ||||| ||| | || || ||| | || | | Sbjct 34757 CAGTCGTGGGTTGTCTCGTTCACGGCATAGCCGAA---GAAGTTCAGCACCTGGAC---G 34704 Query 43509 ATCTGATCGAGCAACTTGCGGCCACGGTTCATGATGCGCGGCACATTTTCGAAAATGATC 43568 ||||||||||||| | ||| |||||| | | ||| |||||||| ||||| | |||| Sbjct 34703 ATCTGATCGAGCAGGTGGCGACCACGGGTGGCCAGGCGTGGCACATTCTCGAACACGATC 34644 Query 43569 AGCTTGGGAAGCTTGTCCTTGAAGGCTTCCAGCATCAGCCACACGCCGCGCAACGTCAGC 43628 || | | |||| || ||||||| ||| |||||||||| |||||||||||| Sbjct 34643 AGGCTCACCGGGTTGTGCTGCCAGGCTTCGCACATGAGCCACACGCAGCGCAACGTCAGT 34584 Query 43629 CGATTGAGGGCCTGATACTTGGCGGTCGCGCTCGACTGCTCGGACAGCAAGCCGGAGAAA 43688 ||||||||||||||| |||| ||| |||| | |||||||| |||||| || Sbjct 34583 TCATTGAGGGCCTGATATTTGGGGGTGAGGCTCAAAGCCTCGGACAACAAGCCAGAAGCG 34524 Query 43689 CCTTTGCATGGAGCGGACAAGAACACGATATCGGGGAACTCGCCATGCGCTGCGCGCCGA 43748 || ||||| || | | |||||| | |||||| || | ||| ||||| || Sbjct 34523 CCCTTGCAGGGGCTGCTGATGAACACCACATCGGGATCCTGGAAGCCCGCAGCGCGGCGT 34464 Query 43749 ATGTCGTCCGGTACCGCCTGCTGCCAATCGGGATCAGGGTCGCGACTGTGAAAGGCCCGG 43808 ||||| |||| |||| |||| |||| || || | |||||||| | Sbjct 34463 ATGTCTGCCGGCGTAGCCTCTCGCCAGTCGGCGGGCGGCTCCTTGCCATGAAAGGCGGTG 34404 Query 43809 TACTGCTCCAGGTCGAACAGATCGAGCAGGGTGCCGGGAACGCCGGCAAGGCGCGTGAAA 43868 || ||||| || |||||| || | | || || || |||||||| | ||| |||| Sbjct 34403 TATTGCTCGCGGGTGAACAGGTCCATTTGTGTACCTGGTACGCCGGCCAAGCGGTCGAAA 34344 Query 43869 TCACGGATGGCCGCCGG-ATCGTTGTCGATGCCCCCGATGCAGCGGAACTTGGCATTCAG 43927 || || | | |||||| || |||| ||| || |||||||| | | || | ||| Sbjct 34343 TCGCGCA-GCGCGCCGGCGTCCACATCGACGCCGCCAATGCAGCGCCATTCTGCCTGCAG 34285 Query 43928 ACTACCGACACGAGCCGATCCCTTGTTGAAGCCTTTGGCGCCGGCACCGAGCCCGCAAAA 43987 || || | || |||||| || ||||||||| | || |||||||| | Sbjct 34284 GTGGCCAACCACCTCTTTGTTCTGGTTGAAACCCTTGGCGCCGCCGCCAAGCCCGCAGCA 34225 Query 43988 CAGATGAAAGTGCGTGA 44004 | |||||||||| ||| Sbjct 34224 GAAATGAAAGTGCTTGA 34208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183542634480468