Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_003324.1
Length=57416
Score E
Sequences producing significant alignments: (Bits) Value
seq12372 313 9e-81
>seq12372
Length=38393
Score = 313 bits (346), Expect = 9e-81
Identities = 587/857 (68%), Gaps = 17/857 (2%)
Strand=Plus/Minus
Query 43158 GGCATAATGCCAAAGTCCCGCAGGTTGCCGTCCTCGACGGCGAGCTTGTTGAGCGAGCGC 43217
|||| ||| ||||||||||||||| ||| || |||| ||| | || | ||| ||||
Sbjct 35057 GGCACAATCACAAAGTCCCGCAGGTAGCCATCTTCGATGGCCAACTGATCGAGGCTGCGC 34998
Query 43218 CAATCCGAGCCAGCCTCGACGAAGGCAAGGCGCACCCACGTCTTCCACTGCAGCGAAGGA 43277
|| ||| || |||||||| | ||||||||| |||||||| ||||| ||||| | |||
Sbjct 34997 CAGTCCTTACCGGCCTCGACCAGGGCAAGGCGTACCCACGTTTTCCATTGCAGTGCAGGT 34938
Query 43278 ACACGATGTAGGGGGCCGCCT-GCAGGGT--CGCCTGGCAGCGGCAGTTTCTCAAGGATT 43334
|| || || | |||||| | || | | |||| |||||||||| |||| |
Sbjct 34937 ACGCGGTGCATCGGGCCGGCGCGCTCGATATCGCCCGGCAGCGGCATGCGGCCAAGAACG 34878
Query 43335 TCGCCGACGCCTCGCAGGCGCTTCTTTTCGGGCTCGTAAAGGAACGGAGGCACAGTCGGT 43394
| ||||| | ||||| ||| || || ||||| || |||||||| ||||| ||
Sbjct 34877 GCACCGACCGATTGCAGGGACTTTTTCTCCGGCTCATAGAGGAACGGCGGCACCTTCTCG 34818
Query 43395 TCGTGGCGCGCAACAAGCAGGAAGCGCTTGCGGCTCTGACCCAAACCGCCGATCTGACCG 43454
|||| || || || | |||||||||||||||||| || |||| ||||| | || |||
Sbjct 34817 ACGTGCCGGGCTACCAACAGGAAGCGCTTGCGGCTTTGGGCCAACCCGCCCAGCTCCCCG 34758
Query 43455 CAGTCGTGGGTGGTCTCGGCGACGGC------GAAATTGTAGCTCCGCAGCAGGGCAATG 43508
||||||||||| |||||| ||||| ||| | || || ||| | || | |
Sbjct 34757 CAGTCGTGGGTTGTCTCGTTCACGGCATAGCCGAA---GAAGTTCAGCACCTGGAC---G 34704
Query 43509 ATCTGATCGAGCAACTTGCGGCCACGGTTCATGATGCGCGGCACATTTTCGAAAATGATC 43568
||||||||||||| | ||| |||||| | | ||| |||||||| ||||| | ||||
Sbjct 34703 ATCTGATCGAGCAGGTGGCGACCACGGGTGGCCAGGCGTGGCACATTCTCGAACACGATC 34644
Query 43569 AGCTTGGGAAGCTTGTCCTTGAAGGCTTCCAGCATCAGCCACACGCCGCGCAACGTCAGC 43628
|| | | |||| || ||||||| ||| |||||||||| ||||||||||||
Sbjct 34643 AGGCTCACCGGGTTGTGCTGCCAGGCTTCGCACATGAGCCACACGCAGCGCAACGTCAGT 34584
Query 43629 CGATTGAGGGCCTGATACTTGGCGGTCGCGCTCGACTGCTCGGACAGCAAGCCGGAGAAA 43688
||||||||||||||| |||| ||| |||| | |||||||| |||||| ||
Sbjct 34583 TCATTGAGGGCCTGATATTTGGGGGTGAGGCTCAAAGCCTCGGACAACAAGCCAGAAGCG 34524
Query 43689 CCTTTGCATGGAGCGGACAAGAACACGATATCGGGGAACTCGCCATGCGCTGCGCGCCGA 43748
|| ||||| || | | |||||| | |||||| || | ||| ||||| ||
Sbjct 34523 CCCTTGCAGGGGCTGCTGATGAACACCACATCGGGATCCTGGAAGCCCGCAGCGCGGCGT 34464
Query 43749 ATGTCGTCCGGTACCGCCTGCTGCCAATCGGGATCAGGGTCGCGACTGTGAAAGGCCCGG 43808
||||| |||| |||| |||| |||| || || | |||||||| |
Sbjct 34463 ATGTCTGCCGGCGTAGCCTCTCGCCAGTCGGCGGGCGGCTCCTTGCCATGAAAGGCGGTG 34404
Query 43809 TACTGCTCCAGGTCGAACAGATCGAGCAGGGTGCCGGGAACGCCGGCAAGGCGCGTGAAA 43868
|| ||||| || |||||| || | | || || || |||||||| | ||| ||||
Sbjct 34403 TATTGCTCGCGGGTGAACAGGTCCATTTGTGTACCTGGTACGCCGGCCAAGCGGTCGAAA 34344
Query 43869 TCACGGATGGCCGCCGG-ATCGTTGTCGATGCCCCCGATGCAGCGGAACTTGGCATTCAG 43927
|| || | | |||||| || |||| ||| || |||||||| | | || | |||
Sbjct 34343 TCGCGCA-GCGCGCCGGCGTCCACATCGACGCCGCCAATGCAGCGCCATTCTGCCTGCAG 34285
Query 43928 ACTACCGACACGAGCCGATCCCTTGTTGAAGCCTTTGGCGCCGGCACCGAGCCCGCAAAA 43987
|| || | || |||||| || ||||||||| | || |||||||| |
Sbjct 34284 GTGGCCAACCACCTCTTTGTTCTGGTTGAAACCCTTGGCGCCGCCGCCAAGCCCGCAGCA 34225
Query 43988 CAGATGAAAGTGCGTGA 44004
| |||||||||| |||
Sbjct 34224 GAAATGAAAGTGCTTGA 34208
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 183542634480468
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |