Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq15277 138 1e-27
seq20974 120 3e-22
seq20687 96.9 3e-15
>seq15277
Length=4737824
Score = 138 bits (152), Expect = 1e-27
Identities = 111/134 (83%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713
|||||||| || || |||||||| |||||||| | |||||||||| ||||||||||||
Sbjct 3367422 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTTTG 3367481
Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773
| ||| ||||| | ||||| |||||||||||||| ||||| ||||| || ||||| |||
Sbjct 3367482 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 3367541
Query 11774 ACTACTCTTTCTCC 11787
|| || | ||||||
Sbjct 3367542 ACGACACGTTCTCC 3367555
>seq20974
Length=1049469
Score = 120 bits (132), Expect = 3e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711
|||| ||||| || || |||||||| ||||| || | ||| ||||| | ||||| ||| |
Sbjct 250903 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCT 250962
Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771
||| ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| |
Sbjct 250963 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 251022
Query 11772 CTACTACTCTTTCTCC 11787
| || || ||||| ||
Sbjct 251023 CCACCACCCTTTCCCC 251038
Score = 86.0 bits (94), Expect = 6e-12
Identities = 90/117 (77%), Gaps = 1/117 (1%)
Strand=Plus/Plus
Query 11879 TTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATA 11938
|||||| || |||||| | || || ||||||| ||||| ||||| ||||| |||| |
Sbjct 254421 TTTTCT-TAGGATCTCTGATGTAAGTGTCTATTAGCAAACTGTACATCTCTGAGTGAACA 254479
Query 11939 TTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCC 11995
||||| || |||||||| ||||||||||| || ||||||| | ||| || |||
Sbjct 254480 TTTTCGATGAGAATTTGAAAGCCATAGAAACAGCGAGCCTCTGGAACCTGCACCTCC 254536
>seq20687
Length=1308170
Score = 96.9 bits (106), Expect = 3e-15
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197
|||||||| ||||| || || ||||| | || || || || || ||||| ||||||||
Sbjct 999338 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 999279
Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257
||||||||||| | ||||| |||| || || ||||||||||| || || || || |
Sbjct 999278 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAA 999219
Query 37258 CTATTTCTCAATCCAT 37273
|| ||||| | ||||
Sbjct 999218 CTGTTTCTTACACCAT 999203
Score = 89.7 bits (98), Expect = 5e-13
Identities = 114/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922
|||| ||||| || |||||||| || ||||| | || |||| | | | |||| |||
Sbjct 1001579 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGTATGT 1001520
Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATT 36982
||| || || |||||||| || || || ||||| ||||||||||| | | || ||
Sbjct 1001519 TCAAAGACTGGCTTTGATCAATGAAAGCTCCTCTCTCGGCTGCCATCTTGAGTATGGTTT 1001460
Query 36983 TTTGAGATATCTCCCAAACCGTTTTATATATTTGTTT 37019
| ||||| || ||||| || || ||||| | ||| ||
Sbjct 1001459 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTT 1001423
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468344927472720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |