Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq15277 138 1e-27 seq20974 120 3e-22 seq20687 96.9 3e-15 >seq15277 Length=4737824 Score = 138 bits (152), Expect = 1e-27 Identities = 111/134 (83%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 |||||||| || || |||||||| |||||||| | |||||||||| |||||||||||| Sbjct 3367422 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTTTG 3367481 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| ||||| ||||| || ||||| ||| Sbjct 3367482 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGCT 3367541 Query 11774 ACTACTCTTTCTCC 11787 || || | |||||| Sbjct 3367542 ACGACACGTTCTCC 3367555 >seq20974 Length=1049469 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | ||||| ||| | Sbjct 250903 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCT 250962 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| | Sbjct 250963 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 251022 Query 11772 CTACTACTCTTTCTCC 11787 | || || ||||| || Sbjct 251023 CCACCACCCTTTCCCC 251038 Score = 86.0 bits (94), Expect = 6e-12 Identities = 90/117 (77%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 11879 TTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATA 11938 |||||| || |||||| | || || ||||||| ||||| ||||| ||||| |||| | Sbjct 254421 TTTTCT-TAGGATCTCTGATGTAAGTGTCTATTAGCAAACTGTACATCTCTGAGTGAACA 254479 Query 11939 TTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCC 11995 ||||| || |||||||| ||||||||||| || ||||||| | ||| || ||| Sbjct 254480 TTTTCGATGAGAATTTGAAAGCCATAGAAACAGCGAGCCTCTGGAACCTGCACCTCC 254536 >seq20687 Length=1308170 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | || || || || || ||||| |||||||| Sbjct 999338 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 999279 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | ||||| |||| || || ||||||||||| || || || || | Sbjct 999278 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAA 999219 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 999218 CTGTTTCTTACACCAT 999203 Score = 89.7 bits (98), Expect = 5e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922 |||| ||||| || |||||||| || ||||| | || |||| | | | |||| ||| Sbjct 1001579 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGTATGT 1001520 Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATT 36982 ||| || || |||||||| || || || ||||| ||||||||||| | | || || Sbjct 1001519 TCAAAGACTGGCTTTGATCAATGAAAGCTCCTCTCTCGGCTGCCATCTTGAGTATGGTTT 1001460 Query 36983 TTTGAGATATCTCCCAAACCGTTTTATATATTTGTTT 37019 | ||||| || ||||| || || ||||| | ||| || Sbjct 1001459 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTT 1001423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468344927472720