Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3100 185 1e-41 seq23530 178 2e-39 seq20687 140 4e-28 seq15277 132 6e-26 seq20974 102 1e-16 seq12120 91.5 2e-13 >seq3100 Length=2334019 Score = 185 bits (204), Expect = 1e-41 Identities = 162/202 (80%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290 || |||||| | ||||||||| | | ||||| |||||||| |||||||||||||||||| Sbjct 1905345 TTTTTATTAACTGCTTCCAAAACCCGCAACAGGTGCAAGAATAGATTGATGATATCCAAG 1905404 Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350 |||| |||| | ||||| ||||| |||||||| || ||| |||| || | ||||| Sbjct 1905405 TAGAGGCTGATGGCAGCTAATACATACTCTTCAGGTGACAGCCTATGCATCAAGGAGTGT 1905464 Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410 ||||||||||| |||||||| ||||| | |||||| || | ||||| || ||||| |||| Sbjct 1905465 GTGTCATAGATGATGAATCCACAGAAAAGAAGGGCTCCTACAGCAGCCAAGACCAACTCC 1905524 Query 9411 ACTGTTTCACTTTGCACAAATA 9432 ||||| ||||| | | ||||| Sbjct 1905525 ACTGTCTCACTGTAAAAAAATA 1905546 Score = 152 bits (168), Expect = 7e-32 Identities = 105/119 (88%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| |||||||||||||| ||||||| |||| || |||||| | ||||| Sbjct 1910467 CCTGCTCCAAATTTGCTGAAATCTCTCTTAGATTGTACAGTACATACAGTCAAACCAAGA 1910526 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || |||||||||||||| || |||||||||| ||| | ||||||||||||||||||||| Sbjct 1910527 AATACTGCAGTAGTCAGTATAAAAGCTTGCAGAACAATATGCACATCATAGAAAGTAAC 1910585 Score = 104 bits (114), Expect = 3e-17 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 ||||||| |||||||| ||||| || ||||| ||||||||||||||||||||||||||| Sbjct 1923810 CCATTCGGATGTGCACGCTGGCGGAGGCCACGCAGCTGCCATAGTTGAAGTCGTCCTCGA 1923869 Query 9907 TGGAGGAGCACGCGTAGAGG 9926 |||||||||| | |||| || Sbjct 1923870 TGGAGGAGCAGGGGTAGCGG 1923889 >seq23530 Length=2024980 Score = 178 bits (196), Expect = 2e-39 Identities = 276/393 (70%), Gaps = 1/393 (0%) Strand=Plus/Plus Query 36347 GCCCAATCGGCCTT-CTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtt 36405 |||||||| ||||| ||| |||||||||||| ||||||| | || || ||||| | | Sbjct 954646 GCCCAATCTGCCTTTCTTCTTTACACAAGGCGTTGTCTCAACGGCGTTGAAGAGGAATTC 954705 Query 36406 tttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAAT 36465 |||| || |||||||| || || ||| | | ||||| |||||||| ||||| || Sbjct 954706 CCTTTCTTTGGAATCTTTAATGTAAGTGTCAGTGAGGAGACTGTACATTTCAGAATGTAT 954765 Query 36466 GTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGT 36525 |||||| ||||| ||||| || || ||||| | | || || |||||||| |||||| Sbjct 954766 GTTTTCCATGGCAATTTGGAAGCCATAGAAGTAACGGGCTTCCGTAATCTGAACTTCTTG 954825 Query 36526 ACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 36585 | || || || | || |||||||| ||||| || ||||| |||||| | || |||| Sbjct 954826 GCTAAGCCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAGAGAAAGCCAG 954885 Query 36586 TACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTT 36645 ||| || | |||||| | || | || | || | ||| | | || || || Sbjct 954886 AACACGTGAAGTGAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTT 954945 Query 36646 AGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCA 36705 || | ||||| || || ||||||| || || ||||| || || |||||| | ||| Sbjct 954946 GGAAAGGTCCACCTCCTCAGCTGTCCAGAAGGAAGCCTCCGCTTTCCTATACACCTGCCA 955005 Query 36706 GATGTCATGATATTGAATTGGAAAAATAACAAA 36738 | ||| | |||| || ||||| || ||||| Sbjct 955006 AACATCACGGTATTCCATAGGAAAGATGACAAA 955038 >seq20687 Length=1308170 Score = 140 bits (154), Expect = 4e-28 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 999338 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 999279 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 999278 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAA 999219 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 999218 CTGTTTCTTACACCATA 999202 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| |||| ||| |||||||||||||| | || || ||||| || || || || | | Sbjct 976518 CACTGAATACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCAGGA 976459 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 976458 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTA 976399 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || || ||| | |||| || ||||| || ||||| Sbjct 976398 GTTCCACAGTAGTGACCCCACTGTATAAGCCCTGGATTACTTTCAT 976353 Score = 96.9 bits (106), Expect = 5e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||||||||| |||||||| ||||||||||| || | || | || |||| | Sbjct 989763 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAGAGGTCCCTGGCACG 989704 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 || || || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 989703 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 989644 Query 66176 CGGTTCCAAGTATATGGC 66193 || |||| ||| ||||| Sbjct 989643 AGGCTCCAGGTAAATGGC 989626 Score = 96.9 bits (106), Expect = 5e-15 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478 |||| || || ||||| || | || || || | |||||| || || || || || || | Sbjct 994459 CATAGGTTTCATATGGGCCATACTCCTTGGCCAATTCACAGCTGGCTTCCAAGGCTCCAT 994400 Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538 ||||||||||||| ||||||| |||||| | || || ||| | || ||||| || | Sbjct 994399 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCCGGACTCTCAAAAGGGT 994340 Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 65596 | | | |||||||| || ||||| | ||||| || ||||| || || || | ||| Sbjct 994339 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATG 994282 Score = 89.7 bits (98), Expect = 7e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 66435 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 66494 ||||| | ||| | || | || || ||||| || | || ||||| || ||||||||| Sbjct 981583 CTAGAAAGTTGTGGGCGGTTGGTGCCAGCATTGAAGAGAGTGGGAGAGGCATGCGTAAAC 981524 Query 66495 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 66554 || | |||||||| || ||||| || |||||||| | || ||||| || || || Sbjct 981523 CACCTCTCAGAAAGAAGGTTGTATGTTTCAATAGCAGCATCAATATCTTCTTTGTGGATG 981464 Query 66555 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 66593 || || | || | ||| ||||| ||||| ||||||||| Sbjct 981463 CCCACAGATACCCTCATCAACATATGCTGTGGTCTTTCA 981425 >seq15277 Length=4737824 Score = 132 bits (146), Expect = 6e-26 Identities = 102/121 (84%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||||||||| ||||| | ||| |||||||| ||||| |||||||| || || || |||| Sbjct 3367420 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTT 3367479 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| ||||| || ||||| || ||||||||||| |||||||| ||||| ||||||| Sbjct 3367480 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 3367539 Query 36300 C 36300 | Sbjct 3367540 C 3367540 Score = 96.9 bits (106), Expect = 5e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||||| || || ||||| | |||||||||||||| ||||| ||||| || ||||| Sbjct 3369376 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTCTCCATGGC 3369435 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 ||||| || || |||||||| | || || |||||||| |||||| Sbjct 3369436 AATTTGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTCT 3369481 >seq20974 Length=1049469 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| || || | ||| |||||||| || ||||| ||||| || || | || || Sbjct 250905 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCTTT 250964 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 250965 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 251023 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 36542 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 36601 |||||||||||||| ||||| ||||||||||||||||| || || | || |||||| Sbjct 255297 AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAGATAAAA 255356 Query 36602 TATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCAC 36657 || || || | || | | || || ||||| | | || |||||| |||| ||| || Sbjct 255357 TACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGGAGATCTTTTGATAAATCAAC 255412 >seq12120 Length=1614126 Score = 91.5 bits (100), Expect = 2e-13 Identities = 176/257 (68%), Gaps = 7/257 (3%) Strand=Plus/Minus Query 33900 TCCGGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 33957 ||| || || ||||| ||| ||| | ||| | ||| ||||| | ||| ||||| Sbjct 1445337 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCAGTGTC--ATCTAAAACTTGAACTTCC 1445280 Query 33958 TTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTT 34017 | | |||||| ||| |||| |||| | | || ||||| || ||| ||| ||| | || Sbjct 1445279 TCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAGTTCGATCACCCTTTTTG 1445220 Query 34018 ACATTGAATGTACATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATCT 34077 || | || | ||| ||| ||||| || | || || | |||||| ||||||||| Sbjct 1445219 ACTTCGAGCTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCT 1445160 Query 34078 TCGTCTATTACACCGCCTCCTATATCAAT---ACCTTTTAGGGACAGACCAGACCTAGGA 34134 || ||||| ||||| |||||| ||| || |||| | || ||||| | ||| Sbjct 1445159 TCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGA 1445100 Query 34135 GCTATTCTACCATAGCA 34151 |||| ||| |||||||| Sbjct 1445099 GCTACTCTCCCATAGCA 1445083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657920119234920