Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq17408 159 3e-34 seq26173 123 2e-23 seq27490 116 3e-21 seq24935 100 2e-16 seq4873 86.0 5e-12 seq2664 84.2 2e-11 >seq17408 Length=748846 Score = 159 bits (176), Expect = 3e-34 Identities = 133/163 (82%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 |||||||||||| ||| ||||||| || || || |||||||||||||||||||| || | Sbjct 535764 TCAGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGG 535823 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | ||||||||||||||||||||||||||||| || Sbjct 535824 GCACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCA 535883 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCAT 21151 ||||||||||||| || | |||| || ||||| || ||||| Sbjct 535884 CCACGTAAAACTGGCAAAGGGCGTGGCACGGAGGTAGGGCCAT 535926 >seq26173 Length=4939203 Score = 123 bits (136), Expect = 2e-23 Identities = 120/153 (78%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 20945 GTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTG 21004 ||||| ||| || || ||||| ||||| ||| |||| || || ||||||| |||| ||| Sbjct 2187529 GTAAATGTGTGCATCTCCCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTG 2187470 Query 21005 AGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCAT 21064 || |||| || || || ||||| |||||||||||||| || | || || |||||| | Sbjct 2187469 TGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGACACACCCAGGCCCCT 2187410 Query 21065 GTCGGCGGACCTCTGGTACAGCTGGCAGGACAG 21097 ||| | ||| |||||||||||| ||||||||| Sbjct 2187409 GTCTCCTGACTTCTGGTACAGCT-GCAGGACAG 2187378 >seq27490 Length=5292111 Score = 116 bits (128), Expect = 3e-21 Identities = 209/303 (69%), Gaps = 2/303 (1%) Strand=Plus/Plus Query 2890 CTCATAAACAGATTTTCCTCCAATAACCCAGACCGTGTTTAATTGTTCTTTTAGTTTGTA 2949 || ||||||||| | ||||| | | ||||||| || | || | | ||| || Sbjct 4483297 CTTATAAACAGAACTGCCTCCCACTATCCAGACCACGTCCACTTTATTTGTTAATTCTGG 4483356 Query 2950 TTG-TCTATAGAAATTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCG 3008 ||| || ||| | || || ||||| || || |||| || ||||| || ||||| || | Sbjct 4483357 TTGCTCAATA-AGTTTTAAGGCATCATCCAGACTTCTGGCAAGAAAATGAGCTCCCTGTG 4483415 Query 3009 GTGGTTCACGTAATTCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCT 3068 | ||||| | |||||| || | || ||||||||||||| | | ||| || |||| Sbjct 4483416 GAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCT 4483475 Query 3069 TTTCAGGGATGGAAAACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAA 3128 | || || ||||| ||||| ||| | | |||||||| ||| ||||| || |||| | Sbjct 4483476 TCTCTGGAATGGAGAACCAGGTTTTCCTACCCATAATCACCGAATTCTGTTTACCTTCTC 4483535 Query 3129 CCGATGGCGTAGACGTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAG 3188 | || | || | |||||| | || |||||| | |||||| || || | ||||| | Sbjct 4483536 CTGAAGAGGTTGTGGTCATTCTTTGGAAATACCTGTATTCGTTCCTGAGCGAGGGCCAGG 4483595 Query 3189 GCA 3191 ||| Sbjct 4483596 GCA 4483598 >seq24935 Length=3814984 Score = 100 bits (110), Expect = 2e-16 Identities = 173/249 (69%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 || || ||||| || || || | || ||||| ||| ||| || || ||||| | | Sbjct 2921615 TTTAAGGCATCATCCAGACTTTTGGCAAGAAAATGTATTCCCTGTGGAGGTTCGTTGAGT 2921556 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 ||||| || | || ||||||||||||||| | ||| || ||||| || || | ||| Sbjct 2921555 TCTCTACTGAGAACTATATTAATTCTGTTCTTTAAAGGTCGATTCTTCTCTGGAAAGGAG 2921496 Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142 ||||| || | | |||||||| |||| ||||| || |||| | || || | || | Sbjct 2921495 AACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCTTCTACTGAAGAGGTTGTG 2921436 Query 3143 GTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCATTGTTCC-GTT 3201 |||||| | || |||||| | ||| || || || ||||| |||| || || ||| Sbjct 2921435 GTCATTCTTTGGAAATACCTGTATTCATTCCTGAGCGGAGGCCAGGGCA-GGTCCCTGTT 2921377 Query 3202 TTTACCAAT 3210 ||||| || Sbjct 2921376 CTTACCGAT 2921368 >seq4873 Length=1786275 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/199 (70%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 || || ||||| || || || | || ||||| || | ||| || || ||||| | | Sbjct 1550142 TTTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGGTCCCTGTGGAGGTTCCTTGAGT 1550201 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 ||||| || | || ||||||||||||| | | ||| || ||||| || || ||||| Sbjct 1550202 TCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGAATGGAG 1550261 Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142 ||||| || | | |||||||| |||| || || || |||| | | || | || | Sbjct 1550262 AACCAGGTCTTCCTACCCATAATCACCAAATACTGTTTACCTTCTCCTGAAGAAGTTGTG 1550321 Query 3143 GTCATT-TTCTGAAAATAC 3160 |||||| || |||||||| Sbjct 1550322 GTCATTCTTTGGAAAATAC 1550340 >seq2664 Length=1721353 Score = 84.2 bits (92), Expect = 2e-11 Identities = 166/239 (69%), Gaps = 5/239 (2%) Strand=Plus/Minus Query 2889 TCTCATAAACAGATTTTCCTCCAATAACCCAGACCGTGTTTAATTGTTCTTTTAGTTTGT 2948 ||| |||||| || | ||||| | | ||| ||| ||| | || | | ||| || Sbjct 228561 TCTTATAAACGGAACTGCCTCCCACTATCCAAACCATGTCCATTTTATTTGTTAATTCTG 228502 Query 2949 ATTG-TCTATAGAAATTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGC 3007 ||| || ||| | || || ||||| || || || | || ||||| | ||||| || Sbjct 228501 GTTGCTCAATA-AGTTTTAAGGCATCATCCAGACTTTTAGCAAGAAAACGAGCTCCCTGT 228443 Query 3008 GGTGGTTCACGTAA-TTCTCTGCTCAAAATAATATTAATTCTGTTC-ACCAGAGGGCGCT 3065 || ||||| ||| | |||||| || | || ||||||||||||| | | ||| || | Sbjct 228442 GGAGGTTC-CGTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTTAAAGGTCGAT 228384 Query 3066 TCTTTTCAGGGATGGAAAACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCT 3124 |||| || || ||||| ||||| ||| | |||||||| |||| ||||| || |||| Sbjct 228383 TCTTCTCTGGAATGGAGAACCAGGTTTTCCCACCCATAATCACCAAATTCTGTTTACCT 228325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427615877160240