Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_003401.1
Length=133719
Score E
Sequences producing significant alignments: (Bits) Value
seq17408 159 3e-34
seq26173 123 2e-23
seq27490 116 3e-21
seq24935 100 2e-16
seq4873 86.0 5e-12
seq2664 84.2 2e-11
>seq17408
Length=748846
Score = 159 bits (176), Expect = 3e-34
Identities = 133/163 (82%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048
|||||||||||| ||| ||||||| || || || |||||||||||||||||||| || |
Sbjct 535764 TCAGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGG 535823
Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108
| || || ||||||||||| | ||||||||||||||||||||||||||||| ||
Sbjct 535824 GCACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCA 535883
Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCAT 21151
||||||||||||| || | |||| || ||||| || |||||
Sbjct 535884 CCACGTAAAACTGGCAAAGGGCGTGGCACGGAGGTAGGGCCAT 535926
>seq26173
Length=4939203
Score = 123 bits (136), Expect = 2e-23
Identities = 120/153 (78%), Gaps = 1/153 (1%)
Strand=Plus/Minus
Query 20945 GTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTG 21004
||||| ||| || || ||||| ||||| ||| |||| || || ||||||| |||| |||
Sbjct 2187529 GTAAATGTGTGCATCTCCCAAAGTGTGTACAGAGTCACCTGGCTTCAGGCCTGTGATGTG 2187470
Query 21005 AGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCAT 21064
|| |||| || || || ||||| |||||||||||||| || | || || |||||| |
Sbjct 2187469 TGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGACACACCCAGGCCCCT 2187410
Query 21065 GTCGGCGGACCTCTGGTACAGCTGGCAGGACAG 21097
||| | ||| |||||||||||| |||||||||
Sbjct 2187409 GTCTCCTGACTTCTGGTACAGCT-GCAGGACAG 2187378
>seq27490
Length=5292111
Score = 116 bits (128), Expect = 3e-21
Identities = 209/303 (69%), Gaps = 2/303 (1%)
Strand=Plus/Plus
Query 2890 CTCATAAACAGATTTTCCTCCAATAACCCAGACCGTGTTTAATTGTTCTTTTAGTTTGTA 2949
|| ||||||||| | ||||| | | ||||||| || | || | | ||| ||
Sbjct 4483297 CTTATAAACAGAACTGCCTCCCACTATCCAGACCACGTCCACTTTATTTGTTAATTCTGG 4483356
Query 2950 TTG-TCTATAGAAATTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCG 3008
||| || ||| | || || ||||| || || |||| || ||||| || ||||| || |
Sbjct 4483357 TTGCTCAATA-AGTTTTAAGGCATCATCCAGACTTCTGGCAAGAAAATGAGCTCCCTGTG 4483415
Query 3009 GTGGTTCACGTAATTCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCT 3068
| ||||| | |||||| || | || ||||||||||||| | | ||| || ||||
Sbjct 4483416 GAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCT 4483475
Query 3069 TTTCAGGGATGGAAAACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAA 3128
| || || ||||| ||||| ||| | | |||||||| ||| ||||| || |||| |
Sbjct 4483476 TCTCTGGAATGGAGAACCAGGTTTTCCTACCCATAATCACCGAATTCTGTTTACCTTCTC 4483535
Query 3129 CCGATGGCGTAGACGTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAG 3188
| || | || | |||||| | || |||||| | |||||| || || | ||||| |
Sbjct 4483536 CTGAAGAGGTTGTGGTCATTCTTTGGAAATACCTGTATTCGTTCCTGAGCGAGGGCCAGG 4483595
Query 3189 GCA 3191
|||
Sbjct 4483596 GCA 4483598
>seq24935
Length=3814984
Score = 100 bits (110), Expect = 2e-16
Identities = 173/249 (69%), Gaps = 2/249 (1%)
Strand=Plus/Minus
Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022
|| || ||||| || || || | || ||||| ||| ||| || || ||||| | |
Sbjct 2921615 TTTAAGGCATCATCCAGACTTTTGGCAAGAAAATGTATTCCCTGTGGAGGTTCGTTGAGT 2921556
Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082
||||| || | || ||||||||||||||| | ||| || ||||| || || | |||
Sbjct 2921555 TCTCTACTGAGAACTATATTAATTCTGTTCTTTAAAGGTCGATTCTTCTCTGGAAAGGAG 2921496
Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142
||||| || | | |||||||| |||| ||||| || |||| | || || | || |
Sbjct 2921495 AACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCTTCTACTGAAGAGGTTGTG 2921436
Query 3143 GTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCATTGTTCC-GTT 3201
|||||| | || |||||| | ||| || || || ||||| |||| || || |||
Sbjct 2921435 GTCATTCTTTGGAAATACCTGTATTCATTCCTGAGCGGAGGCCAGGGCA-GGTCCCTGTT 2921377
Query 3202 TTTACCAAT 3210
||||| ||
Sbjct 2921376 CTTACCGAT 2921368
>seq4873
Length=1786275
Score = 86.0 bits (94), Expect = 5e-12
Identities = 139/199 (70%), Gaps = 1/199 (1%)
Strand=Plus/Plus
Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022
|| || ||||| || || || | || ||||| || | ||| || || ||||| | |
Sbjct 1550142 TTTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGGTCCCTGTGGAGGTTCCTTGAGT 1550201
Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082
||||| || | || ||||||||||||| | | ||| || ||||| || || |||||
Sbjct 1550202 TCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGAATGGAG 1550261
Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142
||||| || | | |||||||| |||| || || || |||| | | || | || |
Sbjct 1550262 AACCAGGTCTTCCTACCCATAATCACCAAATACTGTTTACCTTCTCCTGAAGAAGTTGTG 1550321
Query 3143 GTCATT-TTCTGAAAATAC 3160
|||||| || ||||||||
Sbjct 1550322 GTCATTCTTTGGAAAATAC 1550340
>seq2664
Length=1721353
Score = 84.2 bits (92), Expect = 2e-11
Identities = 166/239 (69%), Gaps = 5/239 (2%)
Strand=Plus/Minus
Query 2889 TCTCATAAACAGATTTTCCTCCAATAACCCAGACCGTGTTTAATTGTTCTTTTAGTTTGT 2948
||| |||||| || | ||||| | | ||| ||| ||| | || | | ||| ||
Sbjct 228561 TCTTATAAACGGAACTGCCTCCCACTATCCAAACCATGTCCATTTTATTTGTTAATTCTG 228502
Query 2949 ATTG-TCTATAGAAATTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGC 3007
||| || ||| | || || ||||| || || || | || ||||| | ||||| ||
Sbjct 228501 GTTGCTCAATA-AGTTTTAAGGCATCATCCAGACTTTTAGCAAGAAAACGAGCTCCCTGT 228443
Query 3008 GGTGGTTCACGTAA-TTCTCTGCTCAAAATAATATTAATTCTGTTC-ACCAGAGGGCGCT 3065
|| ||||| ||| | |||||| || | || ||||||||||||| | | ||| || |
Sbjct 228442 GGAGGTTC-CGTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTTAAAGGTCGAT 228384
Query 3066 TCTTTTCAGGGATGGAAAACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCT 3124
|||| || || ||||| ||||| ||| | |||||||| |||| ||||| || ||||
Sbjct 228383 TCTTCTCTGGAATGGAGAACCAGGTTTTCCCACCCATAATCACCAAATTCTGTTTACCT 228325
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427615877160240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |