Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_003444.1 Length=37074 Score E Sequences producing significant alignments: (Bits) Value seq9203 480 2e-131 >seq9203 Length=13179 Score = 480 bits (532), Expect = 2e-131 Identities = 683/950 (72%), Gaps = 8/950 (1%) Strand=Plus/Minus Query 19172 CCTATATATTCACCGAGAACACCAATCCCGATCAGTTGCACTCCACCCAAGAAA-AGTAT 19230 || ||||||||||| || |||||||| || |||| ||| | ||||| |||||| || || Sbjct 11477 CCGATATATTCACCCAGCACACCAATACCTATCAATTGAATGCCACC-AAGAAACAGAAT 11419 Query 19231 TGATACAAGCAGGGAGGGATACCCGCGTACTGGGTTACCAAAGACAAGGGTGTCTATAAT 19290 || || || || || ||||| || | || | ||||| ||| || | || || | Sbjct 11418 GGAGACGAGTAGCGATGGATAACCAGGCACAGCATTACCCCAGATAACTTTATCAATTAC 11359 Query 19291 CATCCATGCACCATATAAAAATGAAATGCTTGCAACAAACAAACCTATATAAGTCCATAC 19350 ||| | |||||| |||||||| | | || |||||||| |||| ||| |||||||| Sbjct 11358 CATGAAGCTACCATACAAAAATGAGCAGGTAGCCACAAACAACCCTAAATATGTCCATAC 11299 Query 19351 GCGAAGAGGAAAGGTTGAAAAACTTGTGATACCTTCCAGTGCCAGATTCCATAATTTCCA 19410 | ||||| | | |||||| || || || ||||| | |||||||||||||||||||| Sbjct 11298 TCTTAGAGGTACAGATGAAAAGCTGGTTATTCCTTCAATCGCCAGATTCCATAATTTCCA 11239 Query 19411 GCCATTAAATTTTGAGATGCCAGCAACGCGCTCTGCGCGTACA-TATTCAACGACATCTG 19469 ||||||||| ||||| |||||| | ||||| | || | |||||||| | || Sbjct 11238 GCCATTAAACTTTGAATCCCCAGCAGACCTTTCTGCTC-TAGAGTATTCAACCAGTTCAA 11180 Query 19470 TCTGACCACCCACCCAGCTCAGTATGCCTTTCATGAAAAGATTGCGCTCAGGCAACAGTT 19529 | | || | |||| || ||| |||||||| || | |||||||||||||| ||| | Sbjct 11179 TATTTCCGCTTGCCCATGACAATATCCCTTTCATAAACAAATTGCGCTCAGGCAGCAGCT 11120 Query 19530 TAATGTTCTCCACAACCTCACGAGACATGAGTCGAAAATCTCCGACATTTTCCTCGATCT 19589 ||| || || || |||| | ||||| ||||| ||||| || ||||| || || || Sbjct 11119 TAACATTTTCGACTGCCTCTCTTGACATTAGTCGGAAATCACCTACATTCTCTTCAATTC 11060 Query 19590 TTGGGGTGCTTATTTTGTTGTGTAACTTATAGAACCACTCAGCTGTCTTACGTTTCAGTC 19649 | || || || ||||| ||||| | |||| |||||||| ||||| || | ||||| | Sbjct 11059 TCGGCGTACTGATTTTATTGTGGCATCTATAAAACCACTCGGCTGTTTTCCTTTTCAACC 11000 Query 19650 GTCCATCAGTTGAGCGGTCTGAACGTTTAGCAAGCACCATGTCAGCACCTGCCTGCCACT 19709 || | ||||| || | ||| || || | ||| | ||||| ||| |||||| | Sbjct 10999 AGTTTTCTTTAGAGCGATCAGTACGCTTGGCTAACACTACATCAGCCCCTAACTGCCATT 10940 Query 19710 TTTCAATAAGATGAGGGATGACCTCAATAGGATCTTGCAGGTCGACATCAATAGGAATTA 19769 || |||||| | || || || ||||| ||||| || || || |||||||| ||||||| Sbjct 10939 TTCTAATAAGCTCTGGAATTACTTCAATGGGATCCTGAAGATCTACATCAATTGGAATTA 10880 Query 19770 CAGCATCGCCGCTTGCATGGTCTAACCCTGCAAATAAGGCTGGTTCTTTACCAAAGTTGC 19829 ||||||| || | |||| |||| || ||||||| ||||| |||||||| || || | Sbjct 10879 CAGCATCTCCAGTCGCATATTCTATACCAGCAAATAGCGCTGGCTCTTTACCGAAATTTC 10820 Query 19830 GTGTAAATGACAGCGGAACAACTAGTGGGTCTGAAACAGCCAGCGCGTTAATAATTGACT 19889 | || || |||| | ||||| |||| | || |||||||| ||| Sbjct 10819 GGGTGAAGCTTAGCGCCATCACTAGACAATCTGCAGTCGCATATTTATTAATAATCAACT 10760 Query 19890 CTGTGGCATCTTTACTTCCGTCATTTATGAATACAATTTCTACTTCATA-TGGCTTCAAC 19948 |||| ||||| | ||| |||||||||||||| | |||||||||||||| | || ||||| Sbjct 10759 CTGTTGCATCGTGACTACCGTCATTTATGAAGATTATTTCTACTTCATACTCGC-TCAAC 10701 Query 19949 TCTTGGAATTCACGTACCGTTTTATAGAAAACAGGTATCGCTTCTTCTTCATTGAAGACA 20008 |||| | |||||| || | ||||||||| | |||||| || |||||||||||||| ||| Sbjct 10700 TCTTTGTTTTCACGAACGGCTTTATAGAAGATAGGTATTGCATCTTCTTCATTGAAAACA 10641 Query 20009 GGAACGACAAGAGATATTTTCATTTCGCATCCCTAAAGACAATGAACTTTGAATAGACGA 20068 || || || | ||||||||||||| ||| |||| ||||| | ||||| || | || Sbjct 10640 GGTACAACCAATGATATTTTCATTTTTTATCTTTAAAAACAATCAGTTTTGAGTAAAAGA 10581 Query 20069 AACCGCAC-ACCAGACTGATGGCGGAGAAGGTGATAAGAGTGACTATTGG 20117 | || ||| | || || || || || || || || || || | ||||| Sbjct 10580 ATCC-CACAATCAAGCTAATTGCAGAAAATGTTATCAGCGTTAAAATTGG 10532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118471975506616