Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq23530 156 6e-33
seq15277 147 3e-30
seq20687 131 2e-25
seq12120 116 5e-21
seq20974 98.7 1e-15
>seq23530
Length=2024980
Score = 156 bits (172), Expect = 6e-33
Identities = 271/393 (69%), Gaps = 1/393 (0%)
Strand=Plus/Plus
Query 50149 GCCCAATCGGCCTT-CTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtt 50207
|||||||| ||||| ||| |||||||||||| | || || | ||| || ||||| | |
Sbjct 954646 GCCCAATCTGCCTTTCTTCTTTACACAAGGCGTTGTCTCAACGGCGTTGAAGAGGAATTC 954705
Query 50208 tttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAAT 50267
|||| || |||||||| ||||| || | | ||||| |||||||| ||||| ||
Sbjct 954706 CCTTTCTTTGGAATCTTTAATGTAAGTGTCAGTGAGGAGACTGTACATTTCAGAATGTAT 954765
Query 50268 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGT 50327
|||||| ||||| || || || || ||||| | | || || |||||||| ||||||
Sbjct 954766 GTTTTCCATGGCAATTTGGAAGCCATAGAAGTAACGGGCTTCCGTAATCTGAACTTCTTG 954825
Query 50328 ACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 50387
| || || || | || |||||||| ||||| || ||||| |||||| | || ||||
Sbjct 954826 GCTAAGCCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAGAGAAAGCCAG 954885
Query 50388 TACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTT 50447
||| || | |||| | | || | || | || | ||| | | || || ||
Sbjct 954886 AACACGTGAAGTGAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTT 954945
Query 50448 AGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCA 50507
|| | || || || || ||||||| || || ||||| || || |||||| | |||
Sbjct 954946 GGAAAGGTCCACCTCCTCAGCTGTCCAGAAGGAAGCCTCCGCTTTCCTATACACCTGCCA 955005
Query 50508 GATGTCATGATATTGGATTGGGAAAATAACAAA 50540
| ||| | |||| || || || || |||||
Sbjct 955006 AACATCACGGTATTCCATAGGAAAGATGACAAA 955038
>seq15277
Length=4737824
Score = 147 bits (162), Expect = 3e-30
Identities = 107/124 (86%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
|||||||||| ||||| ||||| |||||||| ||||| |||||||| || || || ||||
Sbjct 3367420 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTT 3367479
Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101
| ||||| ||||| || ||||| || |||||||||||||||||||| |||||||||||||
Sbjct 3367480 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 3367539
Query 50102 CAAC 50105
| ||
Sbjct 3367540 CTAC 3367543
Score = 93.3 bits (102), Expect = 6e-14
Identities = 84/106 (79%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279
|||||||| ||||| || || | |||||||||||||| ||||| ||||| || |||||
Sbjct 3369376 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTCTCCATGGC 3369435
Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325
|| || || || |||||||| | || || |||||||| ||||||
Sbjct 3369436 AATTTGGAAGCCATAGAAACAACGGGCTTCCGTAATCTGAACTTCT 3369481
>seq20687
Length=1308170
Score = 131 bits (144), Expect = 2e-25
Identities = 111/137 (81%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119
|| ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| |
Sbjct 999338 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 999279
Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179
|| |||||||||||||| || ||||||||||| || || ||||| || || | | ||||
Sbjct 999278 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATGAGTAAA 999219
Query 79180 CTATTTCTAAGACCGTA 79196
|| ||||| | ||| ||
Sbjct 999218 CTGTTTCTTACACCATA 999202
Score = 102 bits (112), Expect = 1e-16
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998
||||||||||| |||||||| ||||||||||| || | || || || |||| | |||
Sbjct 989759 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAGAGGTCCCTGGCACGCTGC 989700
Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058
|| || |||||||| ||||| || | ||| |||||| | | || || ||||||| ||
Sbjct 989699 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGC 989640
Query 80059 TCCAAGTATATGGC 80072
|||| ||| |||||
Sbjct 989639 TCCAGGTAAATGGC 989626
Score = 96.9 bits (106), Expect = 5e-15
Identities = 127/176 (72%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359
|| |||||||| || || | || | ||| |||||||| || || || || ||||| |||
Sbjct 994457 TAGGTTTCATATGGGCCATACTCCTTGGCCAATTCACAGCTGGCTTCCAAGGCTCCATAA 994398
Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419
||||||||||| || |||| |||||| | || || || | || ||||| || ||
Sbjct 994397 TAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCCGGACTCTCAAAAGGGTAC 994338
Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 79475
| | |||||||| || ||||| | ||||| || ||||| || || || | |||
Sbjct 994337 CTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATG 994282
Score = 84.2 bits (92), Expect = 3e-11
Identities = 114/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373
||||| | ||| | || | || || ||||| || | || ||||| || |||||||||
Sbjct 981583 CTAGAAAGTTGTGGGCGGTTGGTGCCAGCATTGAAGAGAGTGGGAGAGGCATGCGTAAAC 981524
Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATT 80433
|| | ||||| || || ||||| || |||||||| | || ||||| || || ||
Sbjct 981523 CACCTCTCAGAAAGAAGGTTGTATGTTTCAATAGCAGCATCAATATCTTCTTTGTGGATG 981464
Query 80434 CCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCA 80472
|| || | || | ||| ||||| ||||| |||||||||
Sbjct 981463 CCCACAGATACCCTCATCAACATATGCTGTGGTCTTTCA 981425
>seq12120
Length=1614126
Score = 116 bits (128), Expect = 5e-21
Identities = 179/255 (70%), Gaps = 3/255 (1%)
Strand=Plus/Minus
Query 47703 TCCAGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCCTC 47762
|||||| || ||||| ||| | || || || || ||||| | ||| ||||||||
Sbjct 1445337 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCAGTGTCATCTAAAACTTGAACTTCCTC 1445278
Query 47763 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 47822
| |||||| ||| |||| |||| | | || ||||| || ||| ||| ||| | || ||
Sbjct 1445277 TATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAGTTCGATCACCCTTTTTGAC 1445218
Query 47823 ATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTC 47882
| || | | ||| ||| ||||| || | || || | ||||| |||||||||||
Sbjct 1445217 TTCGAGCTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCTATAATCTTC 1445158
Query 47883 GTCTATTACACCACCTCCTATATCAAT---GCCTTTTAGTGACAGTCCAGACCTAGGAGC 47939
||||| |||||| |||||| ||| || | |||| | || ||||| | |||||
Sbjct 1445157 ATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAACGTGGAGC 1445098
Query 47940 TATTCTACCATAGCA 47954
|| ||| ||||||||
Sbjct 1445097 TACTCTCCCATAGCA 1445083
>seq20974
Length=1049469
Score = 98.7 bits (108), Expect = 1e-15
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043
|| ||||| || || ||||| |||||||| || ||||| ||||| || || | || ||
Sbjct 250905 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGTCCTCTTTTCTTT 250964
Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103
||||| ||||| | ||||| || || || ||||| ||||||||||| || ||||||||
Sbjct 250965 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 251024
Query 50104 AC 50105
||
Sbjct 251025 AC 251026
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 717993047629320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |