Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq15277 123 2e-23 seq23530 111 2e-19 seq20974 82.4 7e-11 >seq15277 Length=4737824 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||| ||||| ||||||||||| || |||||||| | || ||||||| ||||||||||| Sbjct 3367420 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTT 3367479 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||| | ||||| || || |||||||| ||||| || ||||| ||||| | Sbjct 3367480 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 3367539 Query 14014 CTATTAATCGTTCTCC 14029 ||| | |||||||| Sbjct 3367540 CTACGACACGTTCTCC 3367555 Score = 96.9 bits (106), Expect = 3e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || ||||| | ||||| || | ||||| || |||||||||||||| || ||| Sbjct 3365732 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 3365791 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661 |||||||| ||||| |||||||| |||||||||||| Sbjct 3365792 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTT 3365827 >seq23530 Length=2024980 Score = 111 bits (122), Expect = 2e-19 Identities = 257/385 (67%), Gaps = 2/385 (1%) Strand=Plus/Plus Query 14095 TTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAA 14154 |||| |||| || || || | ||||| | ||||| | | | |||||| || ||| Sbjct 954678 TTGTCTCAACGGCGTTGAAGAGGAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAG 954737 Query 14155 TAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGC 14214 | || | || ||||||||||| |||||||||||||| || || || || ||||| ||| Sbjct 954738 TGAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAGT 954797 Query 14215 ATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTA 14274 | | ||||||| || ||||| | || | || |||| |||||||| |||| Sbjct 954798 AACGGGCTTCCGTAATCTGAACTTCTTGGCTAAGCCGCTCCACCAAGTTTTCATTTACTA 954857 Query 14275 TACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGT 14334 | |||||||| |||||| | || |||| | | | | || ||| ||| ||| | Sbjct 954858 TGCCATCACTTGCTGCAGAGAAAGCCAGAACACGTGAAGTGAAATATCTCTCCTCAGGCT 954917 Query 14335 TGAGTTTTTTCCAAT-CGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAA 14393 | || || ||| | | || | ||||| ||||| || || || ||| ||||||| || Sbjct 954918 TCAGGGCTTCCCAGTGCTGA-ATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAGAAG 954976 Query 14394 CTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACA 14453 ||| | ||||| |||||| ||| | || ||| |||||||| | ||| Sbjct 954977 GAAGCCTCCGCTTTCCTATACACCTGCCAAACATCACGGTATTCCATAGGAAAGATGACA 955036 Query 14454 AATCTCGAAGATGTTTCTTTAAGAA 14478 || | | | |||||||| |||| Sbjct 955037 AAGCGGCAGGGGGTTTCTTTCAGAA 955061 >seq20974 Length=1049469 Score = 82.4 bits (90), Expect = 7e-11 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATC-GTCTTTGTTAGAAATAACGCCCATTTT 13582 ||||||||| ||||||| | || |||||||| || || | | ||||| | | Sbjct 234068 TAAAAATCAGCATCTAAGGTGAAGACATTATCTGTAGTT-TCCGCCATAACTGCAAAACG 234126 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 |||||| || ||||| ||| |||||||| || ||||| || || | || || ||||| Sbjct 234127 TTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTTC 234186 Query 13643 CATAAAATCAAATGGATTT 13661 |||||||||||| |||||| Sbjct 234187 CATAAAATCAAAGGGATTT 234205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479543826424200