Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq15277 123 2e-23
seq23530 111 2e-19
seq20974 82.4 7e-11
>seq15277
Length=4737824
Score = 123 bits (136), Expect = 2e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953
|||| ||||| ||||||||||| || |||||||| | || ||||||| |||||||||||
Sbjct 3367420 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTT 3367479
Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013
| | ||| ||||| | ||||| || || |||||||| ||||| || ||||| ||||| |
Sbjct 3367480 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 3367539
Query 14014 CTATTAATCGTTCTCC 14029
||| | ||||||||
Sbjct 3367540 CTACGACACGTTCTCC 3367555
Score = 96.9 bits (106), Expect = 3e-15
Identities = 79/96 (82%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625
|| || || ||||| | ||||| || | ||||| || |||||||||||||| || |||
Sbjct 3365732 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 3365791
Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661
|||||||| ||||| |||||||| ||||||||||||
Sbjct 3365792 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTT 3365827
>seq23530
Length=2024980
Score = 111 bits (122), Expect = 2e-19
Identities = 257/385 (67%), Gaps = 2/385 (1%)
Strand=Plus/Plus
Query 14095 TTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAA 14154
|||| |||| || || || | ||||| | ||||| | | | |||||| || |||
Sbjct 954678 TTGTCTCAACGGCGTTGAAGAGGAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAG 954737
Query 14155 TAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGC 14214
| || | || ||||||||||| |||||||||||||| || || || || ||||| |||
Sbjct 954738 TGAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAGT 954797
Query 14215 ATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTA 14274
| | ||||||| || ||||| | || | || |||| |||||||| ||||
Sbjct 954798 AACGGGCTTCCGTAATCTGAACTTCTTGGCTAAGCCGCTCCACCAAGTTTTCATTTACTA 954857
Query 14275 TACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGT 14334
| |||||||| |||||| | || |||| | | | | || ||| ||| ||| |
Sbjct 954858 TGCCATCACTTGCTGCAGAGAAAGCCAGAACACGTGAAGTGAAATATCTCTCCTCAGGCT 954917
Query 14335 TGAGTTTTTTCCAAT-CGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAA 14393
| || || ||| | | || | ||||| ||||| || || || ||| ||||||| ||
Sbjct 954918 TCAGGGCTTCCCAGTGCTGA-ATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAGAAG 954976
Query 14394 CTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACA 14453
||| | ||||| |||||| ||| | || ||| |||||||| | |||
Sbjct 954977 GAAGCCTCCGCTTTCCTATACACCTGCCAAACATCACGGTATTCCATAGGAAAGATGACA 955036
Query 14454 AATCTCGAAGATGTTTCTTTAAGAA 14478
|| | | | |||||||| ||||
Sbjct 955037 AAGCGGCAGGGGGTTTCTTTCAGAA 955061
>seq20974
Length=1049469
Score = 82.4 bits (90), Expect = 7e-11
Identities = 103/139 (74%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATC-GTCTTTGTTAGAAATAACGCCCATTTT 13582
||||||||| ||||||| | || |||||||| || || | | ||||| | |
Sbjct 234068 TAAAAATCAGCATCTAAGGTGAAGACATTATCTGTAGTT-TCCGCCATAACTGCAAAACG 234126
Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642
|||||| || ||||| ||| |||||||| || ||||| || || | || || |||||
Sbjct 234127 TTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTTC 234186
Query 13643 CATAAAATCAAATGGATTT 13661
|||||||||||| ||||||
Sbjct 234187 CATAAAATCAAAGGGATTT 234205
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479543826424200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |