Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq15277 120 3e-22 seq23530 91.5 1e-13 >seq15277 Length=4737824 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||| ||||| ||||||||||| || |||||||| | || ||||||| ||||||||||| Sbjct 3367420 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTTT 3367479 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||| | || || || || |||||||| ||||| || ||||| ||||| | Sbjct 3367480 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 3367539 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | |||||||| Sbjct 3367540 CTACGACACGTTCTCC 3367555 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || ||||| | ||||| || | ||||| || ||||| |||||||| || ||| Sbjct 3365732 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 3365791 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449 |||||||| ||||| |||||||| || ||||||||| Sbjct 3365792 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTT 3365827 >seq23530 Length=2024980 Score = 91.5 bits (100), Expect = 1e-13 Identities = 238/361 (66%), Gaps = 4/361 (1%) Strand=Plus/Plus Query 13908 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 13967 |||| | ||||| | | | |||||| || ||| | || | || ||||||||||| || Sbjct 954703 TTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAGTGAGGAGACTGTACATTTCAGAATG 954762 Query 13968 TATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC 14027 ||||||||| || || || || || ||||| || | | ||||| | || || || Sbjct 954763 TATGTTTTCCATGGCAATTTGGAAGCCATAGAAGTAACGGGCTTCCGTAATCTGAACTTC 954822 Query 14028 CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGC 14087 | || | || ||||||||||||| || || |||||||| |||||| | || || Sbjct 954823 TTGGCTAAGCCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAGAGAAAGC 954882 Query 14088 CAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAA-- 14145 || | | | | || ||| ||| ||| || || || ||| | ||| || Sbjct 954883 CAGAACACGTGAAGTGAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGT--GCTGAATG 954940 Query 14146 TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATT 14205 ||||| ||||| || || || ||| ||||||| || ||| | ||||| |||||| Sbjct 954941 TCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAGAAGGAAGCCTCCGCTTTCCTATACACC 955000 Query 14206 ACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTTGAAGATGTTTCTTTAAGA 14265 ||| | || ||| |||||||| | ||||| | | | |||||||| ||| Sbjct 955001 TGCCAAACATCACGGTATTCCATAGGAAAGATGACAAAGCGGCAGGGGGTTTCTTTCAGA 955060 Query 14266 A 14266 | Sbjct 955061 A 955061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478405063777320