Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_004629.1 Length=280334 Score E Sequences producing significant alignments: (Bits) Value seq11692 125 1e-23 seq15155 123 4e-23 seq30076 122 2e-22 seq17834 118 2e-21 seq6890 109 1e-18 seq8615 104 4e-17 seq13800 98.7 2e-15 >seq11692 Length=22366 Score = 125 bits (138), Expect = 1e-23 Identities = 81/89 (91%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 271730 TCTTTAGAATATGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCAC 271789 |||| | || |||||||| ||||||||||||||||||||||||| ||||||||||||| Sbjct 13845 TCTTGATTATCTGGCTCCGCGACCTGGACTCGAACCAGGGACCCAATGATTAACAGTCAT 13786 Query 271790 TTGCTCTACCGACTGAGCTATCACGGAAT 271818 |||||||||||||||||||||| |||||| Sbjct 13785 TTGCTCTACCGACTGAGCTATCGCGGAAT 13757 >seq15155 Length=4091 Score = 123 bits (136), Expect = 4e-23 Identities = 82/91 (90%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 271733 TTAGAATATGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTG 271792 || ||| ||||||||||||| ||||||||||| |||||||| ||||||||||||| ||| Sbjct 2422 TTTGAAATTGGCTCCGTGACCAGGACTCGAACCTGGGACCCAATGATTAACAGTCATTTG 2363 Query 271793 CTCTACCGACTGAGCTATCACGGAATTAAAT 271823 ||||||||||||||||||||||||| || || Sbjct 2362 CTCTACCGACTGAGCTATCACGGAACTACAT 2332 Score = 111 bits (122), Expect = 3e-19 Identities = 81/93 (87%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 273267 AAAATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCT 273326 || |||||||| || ||| || |||||||||||||||||||||||||||||||||||||| Sbjct 2504 AATATGGTCGGGGTAGGGGGATTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCT 2445 Query 273327 ACC-AACTGCGCTACACTCCGTATTTAAATTGG 273358 ||| ||||||||| || ||| || ||||||| Sbjct 2444 ACCGGACTGCGCTATACCCCGGTTTGAAATTGG 2412 Score = 102 bits (112), Expect = 1e-16 Identities = 72/81 (89%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 273267 AAAATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCT 273326 || |||||||| || ||| || |||||||||||||||||||||||||||||||||||||| Sbjct 2850 AATATGGTCGGGGTAGGGGGATTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCT 2791 Query 273327 ACC-AACTGCGCTACACTCCG 273346 ||| ||||||||| || ||| Sbjct 2790 ACCGGACTGCGCTATACCCCG 2770 >seq30076 Length=4501 Score = 122 bits (134), Expect = 2e-22 Identities = 73/77 (95%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 271741 TGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGCTCTACCG 271800 |||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||| Sbjct 3659 TGGCTCCGCGACCTGGACTCGAACCAGGGACCCAATGATTAACAGTCATTTGCTCTACCG 3600 Query 271801 ACTGAGCTATCACGGAA 271817 ||||||||||| ||||| Sbjct 3599 ACTGAGCTATCGCGGAA 3583 Score = 107 bits (118), Expect = 3e-18 Identities = 73/81 (90%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 273267 AAAATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCT 273326 ||||||||||| ||| || || ||||||||| |||||||||||||||||||||||||||| Sbjct 3744 AAAATGGTCGGGGTGAGGGGATTCGAACTCCTGACATCCTGCTCCCAAAGCAGGCGCGCT 3685 Query 273327 ACC-AACTGCGCTACACTCCG 273346 ||| |||||||||||| ||| Sbjct 3684 ACCGGACTGCGCTACACCCCG 3664 >seq17834 Length=378 Score = 118 bits (130), Expect = 2e-21 Identities = 73/78 (94%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 272872 TGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC 272931 |||||||||||| |||||| |||||| |||||||| ||||||||||| |||||||||||| Sbjct 76 TGGTGGGCCCAGTAGGACTCGAACCTACGACCAAGGGATTATGAGTCCCCTGCTCTAACC 135 Query 272932 AACTGAGCTATAGGCCCT 272949 |||||||||||||||||| Sbjct 136 AACTGAGCTATAGGCCCT 153 >seq6890 Length=6377 Score = 109 bits (120), Expect = 1e-18 Identities = 77/87 (89%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 273261 ATTATTAAAATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGG 273320 ||| |||| |||||||| || ||| || |||||||||||||||||||||||||||||||| Sbjct 183 ATTTTTAATATGGTCGGGGTAGGGGGATTCGAACTCCCGACATCCTGCTCCCAAAGCAGG 242 Query 273321 CGCGCTACC-AACTGCGCTACACTCCG 273346 ||||||||| ||||||||| || ||| Sbjct 243 CGCGCTACCGGACTGCGCTATACCCCG 269 >seq8615 Length=1762 Score = 104 bits (114), Expect = 4e-17 Identities = 74/85 (87%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 272865 TAGTATATGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGC 272924 || ||||||||||||||| | ||||||||| | |||||| ||||||||||| |||| Sbjct 454 TAATATATGGTGGGCCCACCGTGACTTGAACACGGGACCAACGGATTATGAGTCCGCTGC 395 Query 272925 TCTAACCAACTGAGCTATAGGCCCT 272949 ||||||||||||||||||||||||| Sbjct 394 TCTAACCAACTGAGCTATAGGCCCT 370 >seq13800 Length=12474 Score = 98.7 bits (108), Expect = 2e-15 Identities = 80/96 (83%), Gaps = 1/96 (1%) Strand=Plus/Minus Query 272855 AGTGGGAGGCTA-GTATATGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTAT 272913 |||| | |||| | |||||||||||||| ||||| ||||| |||||| |||||| Sbjct 8385 AGTGCGCGGCTTTGAATATGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTAT 8326 Query 272914 GAGTCGCCTGCTCTAACCAACTGAGCTATAGGCCCT 272949 ||||| ||||||||||||||||||||||||||||| Sbjct 8325 GAGTCCTCTGCTCTAACCAACTGAGCTATAGGCCCT 8290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896596453215120