Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_004629.1
Length=280334
Score E
Sequences producing significant alignments: (Bits) Value
seq11692 125 1e-23
seq15155 123 4e-23
seq30076 122 2e-22
seq17834 118 2e-21
seq6890 109 1e-18
seq8615 104 4e-17
seq13800 98.7 2e-15
>seq11692
Length=22366
Score = 125 bits (138), Expect = 1e-23
Identities = 81/89 (91%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 271730 TCTTTAGAATATGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCAC 271789
|||| | || |||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 13845 TCTTGATTATCTGGCTCCGCGACCTGGACTCGAACCAGGGACCCAATGATTAACAGTCAT 13786
Query 271790 TTGCTCTACCGACTGAGCTATCACGGAAT 271818
|||||||||||||||||||||| ||||||
Sbjct 13785 TTGCTCTACCGACTGAGCTATCGCGGAAT 13757
>seq15155
Length=4091
Score = 123 bits (136), Expect = 4e-23
Identities = 82/91 (90%), Gaps = 0/91 (0%)
Strand=Plus/Minus
Query 271733 TTAGAATATGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTG 271792
|| ||| ||||||||||||| ||||||||||| |||||||| ||||||||||||| |||
Sbjct 2422 TTTGAAATTGGCTCCGTGACCAGGACTCGAACCTGGGACCCAATGATTAACAGTCATTTG 2363
Query 271793 CTCTACCGACTGAGCTATCACGGAATTAAAT 271823
||||||||||||||||||||||||| || ||
Sbjct 2362 CTCTACCGACTGAGCTATCACGGAACTACAT 2332
Score = 111 bits (122), Expect = 3e-19
Identities = 81/93 (87%), Gaps = 1/93 (1%)
Strand=Plus/Minus
Query 273267 AAAATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCT 273326
|| |||||||| || ||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 2504 AATATGGTCGGGGTAGGGGGATTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCT 2445
Query 273327 ACC-AACTGCGCTACACTCCGTATTTAAATTGG 273358
||| ||||||||| || ||| || |||||||
Sbjct 2444 ACCGGACTGCGCTATACCCCGGTTTGAAATTGG 2412
Score = 102 bits (112), Expect = 1e-16
Identities = 72/81 (89%), Gaps = 1/81 (1%)
Strand=Plus/Minus
Query 273267 AAAATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCT 273326
|| |||||||| || ||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 2850 AATATGGTCGGGGTAGGGGGATTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCT 2791
Query 273327 ACC-AACTGCGCTACACTCCG 273346
||| ||||||||| || |||
Sbjct 2790 ACCGGACTGCGCTATACCCCG 2770
>seq30076
Length=4501
Score = 122 bits (134), Expect = 2e-22
Identities = 73/77 (95%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 271741 TGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGCTCTACCG 271800
|||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 3659 TGGCTCCGCGACCTGGACTCGAACCAGGGACCCAATGATTAACAGTCATTTGCTCTACCG 3600
Query 271801 ACTGAGCTATCACGGAA 271817
||||||||||| |||||
Sbjct 3599 ACTGAGCTATCGCGGAA 3583
Score = 107 bits (118), Expect = 3e-18
Identities = 73/81 (90%), Gaps = 1/81 (1%)
Strand=Plus/Minus
Query 273267 AAAATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCT 273326
||||||||||| ||| || || ||||||||| ||||||||||||||||||||||||||||
Sbjct 3744 AAAATGGTCGGGGTGAGGGGATTCGAACTCCTGACATCCTGCTCCCAAAGCAGGCGCGCT 3685
Query 273327 ACC-AACTGCGCTACACTCCG 273346
||| |||||||||||| |||
Sbjct 3684 ACCGGACTGCGCTACACCCCG 3664
>seq17834
Length=378
Score = 118 bits (130), Expect = 2e-21
Identities = 73/78 (94%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 272872 TGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC 272931
|||||||||||| |||||| |||||| |||||||| ||||||||||| ||||||||||||
Sbjct 76 TGGTGGGCCCAGTAGGACTCGAACCTACGACCAAGGGATTATGAGTCCCCTGCTCTAACC 135
Query 272932 AACTGAGCTATAGGCCCT 272949
||||||||||||||||||
Sbjct 136 AACTGAGCTATAGGCCCT 153
>seq6890
Length=6377
Score = 109 bits (120), Expect = 1e-18
Identities = 77/87 (89%), Gaps = 1/87 (1%)
Strand=Plus/Plus
Query 273261 ATTATTAAAATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGG 273320
||| |||| |||||||| || ||| || ||||||||||||||||||||||||||||||||
Sbjct 183 ATTTTTAATATGGTCGGGGTAGGGGGATTCGAACTCCCGACATCCTGCTCCCAAAGCAGG 242
Query 273321 CGCGCTACC-AACTGCGCTACACTCCG 273346
||||||||| ||||||||| || |||
Sbjct 243 CGCGCTACCGGACTGCGCTATACCCCG 269
>seq8615
Length=1762
Score = 104 bits (114), Expect = 4e-17
Identities = 74/85 (87%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 272865 TAGTATATGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGC 272924
|| ||||||||||||||| | ||||||||| | |||||| ||||||||||| ||||
Sbjct 454 TAATATATGGTGGGCCCACCGTGACTTGAACACGGGACCAACGGATTATGAGTCCGCTGC 395
Query 272925 TCTAACCAACTGAGCTATAGGCCCT 272949
|||||||||||||||||||||||||
Sbjct 394 TCTAACCAACTGAGCTATAGGCCCT 370
>seq13800
Length=12474
Score = 98.7 bits (108), Expect = 2e-15
Identities = 80/96 (83%), Gaps = 1/96 (1%)
Strand=Plus/Minus
Query 272855 AGTGGGAGGCTA-GTATATGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTAT 272913
|||| | |||| | |||||||||||||| ||||| ||||| |||||| ||||||
Sbjct 8385 AGTGCGCGGCTTTGAATATGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTAT 8326
Query 272914 GAGTCGCCTGCTCTAACCAACTGAGCTATAGGCCCT 272949
||||| |||||||||||||||||||||||||||||
Sbjct 8325 GAGTCCTCTGCTCTAACCAACTGAGCTATAGGCCCT 8290
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 896596453215120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |