Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq11056 96.9 3e-15 seq14188 86.0 5e-12 seq451 86.0 5e-12 seq11297 82.4 6e-11 >seq11056 Length=1110308 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 15136 GCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCT 15195 |||||| | | ||| || || |||||| ||||| || ||||| |||||||| || Sbjct 356877 GCCACCACGAAGTCTCAACACAGGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 356818 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 ||| | | | ||||| ||| |||||||| | |||| | ||| ||||| || Sbjct 356817 CAGAGTACGTCCATCTTCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 356758 Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||||||| ||||| || ||| | ||||| ||||||| ||||| || || Sbjct 356757 AATTCCTTCCTTGTCCTGGATCTTGGCCATTACATTTTCTATTGTATCCGAGGGTTTGAC 356698 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | || ||||| || || ||||| || || || ||||| |||||||| Sbjct 356697 CTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 356647 >seq14188 Length=5250308 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| || || | | |||||| ||| || ||||| |||||| || Sbjct 4004074 CCACCACGAAGTCTCAACACAAGACGAAGGGCGGACTCCTTTTGAGTGTTGTGGTCAGAC 4004133 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| | || |||||||| | |||| | ||| ||||| ||| Sbjct 4004134 AGAGTACGTCCATCTTCCAGTTACTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 4004193 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| ||||| || ||| ||| || ||||||| ||||| ||| || Sbjct 4004194 ATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTTTCTATTGTATCCGAGGGTTCGACC 4004253 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | || ||||| || || ||||| || || || ||||| |||||||| Sbjct 4004254 TCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 4004303 >seq451 Length=5792110 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 15136 GCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCT 15195 |||||| | | ||| || || | |||||||||||| || ||||| |||||| || Sbjct 1082994 GCCACCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAGTGTTGTGGTCAGA 1082935 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 ||| | | | ||||| ||| |||||||| | ||| | ||| ||||| || Sbjct 1082934 CAGAGTACGTCCATCTTCCCGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGGTCAGGAGG 1082875 Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||||||| ||||| || ||| |||||| ||||||| |||| ||| || Sbjct 1082874 AATTCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCTATCATATCCGAGGGTTCGAC 1082815 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATAT 15365 || | || | ||| || || ||||| || || || ||||| ||||||| Sbjct 1082814 CTCGAGAGTGACGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATAT 1082765 >seq11297 Length=1864957 Score = 82.4 bits (90), Expect = 6e-11 Identities = 145/210 (69%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 ||| || || | |||||||||||| || ||||| |||| ||| || | | | | | Sbjct 1109642 TCTCAACACGATATGAAGGGTGGACTCCTTTTGAATGTGGTAGTCAAACAAAGTACGTCC 1109701 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 ||||| | ||| |||||||| | |||| | ||| ||||| | ||||||||| || Sbjct 1109702 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGGGAAATTCCTTCCTT 1109761 Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 ||| || || ||||||| ||||||| ||||| ||| || || | || || Sbjct 1109762 GTCCTGGATCTTAGCCTTTACATTTTCTATTGTATCCAAGGGTTCGACCTCGAGAGTGAT 1109821 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAAT 15357 ||| || |||||||| || || | ||||| Sbjct 1109822 GGTCTT-CCTGTCAGGGTCTTCATGAAAAT 1109850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362043631005933