Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq11056 96.9 3e-15
seq14188 86.0 5e-12
seq451 86.0 5e-12
seq11297 82.4 6e-11
>seq11056
Length=1110308
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 15136 GCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCT 15195
|||||| | | ||| || || |||||| ||||| || ||||| |||||||| ||
Sbjct 356877 GCCACCACGAAGTCTCAACACAGGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 356818
Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255
||| | | | ||||| ||| |||||||| | |||| | ||| ||||| ||
Sbjct 356817 CAGAGTACGTCCATCTTCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 356758
Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315
||||||||| ||||| || ||| | ||||| ||||||| ||||| || ||
Sbjct 356757 AATTCCTTCCTTGTCCTGGATCTTGGCCATTACATTTTCTATTGTATCCGAGGGTTTGAC 356698
Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366
|| | || ||||| || || ||||| || || || ||||| ||||||||
Sbjct 356697 CTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 356647
>seq14188
Length=5250308
Score = 86.0 bits (94), Expect = 5e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||| | | ||| || || | | |||||| ||| || ||||| |||||| ||
Sbjct 4004074 CCACCACGAAGTCTCAACACAAGACGAAGGGCGGACTCCTTTTGAGTGTTGTGGTCAGAC 4004133
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
||| | | | ||||| | || |||||||| | |||| | ||| ||||| |||
Sbjct 4004134 AGAGTACGTCCATCTTCCAGTTACTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 4004193
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|||||||| ||||| || ||| ||| || ||||||| ||||| ||| ||
Sbjct 4004194 ATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTTTCTATTGTATCCGAGGGTTCGACC 4004253
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366
|| | || ||||| || || ||||| || || || ||||| ||||||||
Sbjct 4004254 TCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATATT 4004303
>seq451
Length=5792110
Score = 86.0 bits (94), Expect = 5e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 15136 GCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCT 15195
|||||| | | ||| || || | |||||||||||| || ||||| |||||| ||
Sbjct 1082994 GCCACCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAGTGTTGTGGTCAGA 1082935
Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255
||| | | | ||||| ||| |||||||| | ||| | ||| ||||| ||
Sbjct 1082934 CAGAGTACGTCCATCTTCCCGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGGTCAGGAGG 1082875
Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315
||||||||| ||||| || ||| |||||| ||||||| |||| ||| ||
Sbjct 1082874 AATTCCTTCCTTGTCCTGGATCTTGGCCTTTACGTTTTCTATCATATCCGAGGGTTCGAC 1082815
Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATAT 15365
|| | || | ||| || || ||||| || || || ||||| |||||||
Sbjct 1082814 CTCGAGAGTGACGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATAT 1082765
>seq11297
Length=1864957
Score = 82.4 bits (90), Expect = 6e-11
Identities = 145/210 (69%), Gaps = 1/210 (0%)
Strand=Plus/Plus
Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207
||| || || | |||||||||||| || ||||| |||| ||| || | | | | |
Sbjct 1109642 TCTCAACACGATATGAAGGGTGGACTCCTTTTGAATGTGGTAGTCAAACAAAGTACGTCC 1109701
Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267
||||| | ||| |||||||| | |||| | ||| ||||| | ||||||||| ||
Sbjct 1109702 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGGGAAATTCCTTCCTT 1109761
Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327
||| || || ||||||| ||||||| ||||| ||| || || | || ||
Sbjct 1109762 GTCCTGGATCTTAGCCTTTACATTTTCTATTGTATCCAAGGGTTCGACCTCGAGAGTGAT 1109821
Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAAT 15357
||| || |||||||| || || | |||||
Sbjct 1109822 GGTCTT-CCTGTCAGGGTCTTCATGAAAAT 1109850
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362043631005933
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |