Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq14071 217 5e-52 >seq14071 Length=4236 Score = 217 bits (240), Expect = 5e-52 Identities = 880/1375 (64%), Gaps = 26/1375 (2%) Strand=Plus/Plus Query 28437 aaaaaaaaCAGCAAGTCCACGCTGGCTGCCGGGATCATGATGACGGCGCTGTTACTGAAC 28496 || || ||| ||||||| || | || ||||| |||||| | || || ||| | || ||| Sbjct 268 AAGAAGAACGGCAAGTCAACCATCGCCGCCGGCATCATGCTCACCGCACTGATCCTCAAC 327 Query 28497 TGGCGGCAGGCGGCGGGCTACACCATTCTGGCCCCGACTGTGGAGGTGGCGGCTAACGCC 28556 |||||| | ||| | | || ||| |||| ||||| |||| | |||| |||| || Sbjct 328 TGGCGGGCGTCGGGTGAGTTCATCATCTTGGCGCCGACCAAGGAGATCGCGGATAACTCC 387 Query 28557 TTTAATCCTGCGCGGGATATGGTCAGACGTGACGATGATCTGGATGACCTCTGCCAGGTG 28616 | || ||||| ||||| | |||||| || || | | | | | ||||| Sbjct 388 TACCTCCCGATCCGGGACATGGTGGGTGCTGACGAAGAGCTCAAGGCCTTGCTCAAGGTG 447 Query 28617 CAGACACATATCCGGACCATCACCCACAGGGTGACGGACACTACCCTTAAGGTGGTGGCA 28676 ||| || | || ||| | || ||| | ||| || | ||||| |||||||| || Sbjct 448 CAGGATCACCTGCGCACCGTGACGCACCGTCAGACTAACGCCACCCTCAAGGTGGTTGCG 507 Query 28677 GCCGATCCGAATACGGTGTCCGGTATCAAGTCCGTGGGGACACTGATTGATGAACTGTGG 28736 || || | |||||||| || | || || | || | |||| || |||||| Sbjct 508 GCGGACAGCGAGACGGTGTCGGGCAAGAAAGCCATCGGCGTGTTCGTTGACGAGCTGTGG 567 Query 28737 CTGTTTGGCAAGCAGTACAAAGCGGAAGACATGTTACGTGAAGCCATCGGCGGGCTTGCC 28796 |||| ||||||| | ||| || || | |||| | || || |||| || || || ||| Sbjct 568 GTGTTCGGCAAGCGGGCCAACGCCGAGGCCATGCTGCGCGAGGCCACTGGTGGCCTGGCC 627 Query 28797 TCCCGTCCGGAAGGATTTGTGGTGTACACAACCACCCAGTCGAATGAGCCGCCAGCCGGG 28856 || || || || ||||| | | | | ||||||||||| ||| |||||| ||||| Sbjct 628 TCTCGGCCAGAGGGATTCATCATCTGGGCCACCACCCAGTCCGATGCGCCGCCGGCCGGC 687 Query 28857 GTGTTCAGACAGAAACTGCAGTACGCCCGGGATGTCCGTGACGGCAAAATTCATGATCCG 28916 |||||| | ||||| ||| ||||||||| | || || |||||| | || ||| | Sbjct 688 GTGTTCCGGCAGAAGCTGATGTACGCCCGCAAGGTGCGCGACGGCGAGATCGTCGATAAG 747 Query 28917 CACTTTCTGCCGGTGATATTTGAACACCCTCCTGAAATGGTGGAAAGCGGGGCTCACCTG 28976 || |||||||| | | |||| || | ||| | || ||| | |||| | Sbjct 748 TCGTTCTTGCCGGTGCTGTATGAATTTCCCAAGGCGATGCTAGACGCCGGCGAACACCGG 807 Query 28977 --CTGATGGAAAACCTCGCCATGGTCAATCCGAATCTCGGTTATTCGGTGGATGAGGCTT 29034 || | || | | ||| ||| |||||| | || ||||| || || | | Sbjct 808 GACTTCTCTAACGCGTA--CATCACCAACCCGAATTTGGGGCTGTCGGTTGACGAACCCT 865 Query 29035 TTCTGTACCGGGAGTACCGTAAAGCCCGGGAGGCTGGTGAGGAAGCATTTCGTGGCTTCA 29094 | | | || | |||| | || | | || ||||| || | || || ||||| Sbjct 866 TCATCGAGCGTGGGTACGCCCAGGCGCAGCTGGACGGTGAAGAGTCGTTCCGCGGCTTTC 925 Query 29095 TGTCAAAACATGCCAATGTGGAAATTGGTCTTGCCCTGCGTTCTGACCGCTGGACGGGTG 29154 || | || || ||| || || || || || || | | || || |||||| | || | Sbjct 926 TGGCCAAGCACCTCAACGTCGAGATCGGCCTGGCGTTACTGTCGGATCGCTGGGCAGGCG 985 Query 29155 CGGATTTCTGGGAGCAGCAGGGC----AG--GCGCGTCAGCCTGGACGATATCCTGCA-G 29207 |||||||||||||| |||| | || | || || ||||| || |||| | Sbjct 986 CGGATTTCTGGGAGGCGCAGACCTCCGAGCTGTGCCACACGCTGGAGGA---CCTGATCG 1042 Query 29208 CGCGCTGATGTGGTGACGG---TGGGGATTGACGGCGGGGGCCTGGATGATCTGCTGGGA 29264 |||||| | ||||| | | || | || |||||||| |||||||| |||| || Sbjct 1043 AGCGCTGC-GAGGTGATTGATATCGGCGTCGATGGCGGGGGGCTGGATGACTTGCTTGGC 1101 Query 29265 ATGTACGTGATTGGCCGTGA-CAGGGAAACCCGCGAATGGCTGGGCTGGGGCCATGCCTG 29323 | | | || || || ||||| | | ||| |||||| |||| ||||||||| Sbjct 1102 TTTGCAGCACTCGGTCGAGAGCAGGGCACACGGCGT-TGGCTGACCTGGACCCATGCCTG 1160 Query 29324 GGCGCATGAAACCGCGGTGGTCAGACGGAAGAGTGAGGCATCCCGGTTTCAGGATTTTGT 29383 ||| || | | | ||| | || || || || | || | | || || | Sbjct 1161 GGCCCACCCATCAGTACTGGAGCGGCGTAAAGCAGAAGCGCCGCGCATCCGCGACTTCGC 1220 Query 29384 GGCCTGTGGAGACATGACGATTGTCCGTCGGGTCGGGGATGACACGGCGGAAGTGGCGGA 29443 | ||| || |||| | || || |||| || |||| | || ||||| | Sbjct 1221 GAAGGATGGGCACCTGACCCTGGTTGAACGCATCGGCGACGACATTGAGGCGGTGGCACA 1280 Query 29444 GTATGTGCGTCGTATTCATGAGGCTGAGTTACTGGAGCATATCGGTATTGACCCGTCAGG 29503 ||| | || | |||| | | ||||| | |||| | |||||| | || Sbjct 1281 ACTGGTGGCGCAGGTTGAGCAGGCCGGCCTGCTGGACAAGGTCGGGCTGGACCCGGCCGG 1340 Query 29504 TGTGGGGCAGATTCTGGATTCACTGGCGGAAGCC---GGGATCCCCGACGGAATTGTTGT 29560 || ||| ||| || || | |||| ||||| || || || || | | | Sbjct 1341 CGTCGGGGCGATCCTCGACGCGCTGG---AAGCCATGGGTATTCCGCGCGAGAAAATCGA 1397 Query 29561 GGGGATAAGCCAGGGCTGGAAGCTGGGCGGGGCCATAAAAACCACCGAGCGCAAACTGGC 29620 || || || |||||| |||||||| ||||| ||||| |||||||||||||||| Sbjct 1398 CGGCATCTCACAAGGCTGGCGCCTGGGCGGAGCCATCAAAACTGCCGAGCGCAAACTGGC 1457 Query 29621 TGAGGGAGTACTGGTGCATGGTGGTCAGCCACTGATGGCCTGGTGCGTTGGCAATGCCCG 29680 ||||| ||| | || || || ||||| |||||||||||||| || || ||| Sbjct 1458 CGAGGGCACGCTGCTACACGGGGGCCAGCCGATGATGGCCTGGTGCTGCGGTAACGCCAA 1517 Query 29681 GGTGGAGCCTAAAGGTAACGCCATTCTTATTACCAAACAGGCCAGCGGACGGGGGAAAAT 29740 || ||||| || ||| | || || ||||| |||||||||||||| || || || Sbjct 1518 AGTCGAGCCCCGTGGCAACTCGATCCTCATTACTAAACAGGCCAGCGGCTCGGCCAAGAT 1577 Query 29741 TGACCCGCTGATGGCGCTCTTCAATGCGGTATCCCTGATGTCCCTGAATCCGGAG 29795 ||||||||||||||||| ||||| || || | |||||| |||| ||||| ||| Sbjct 1578 CGACCCGCTGATGGCGCTATTCAACGCTGTGACGCTGATGGCCCTCAATCCAGAG 1632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185186834594152