Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_004813.1
Length=57930
Score E
Sequences producing significant alignments: (Bits) Value
seq14071 217 5e-52
>seq14071
Length=4236
Score = 217 bits (240), Expect = 5e-52
Identities = 880/1375 (64%), Gaps = 26/1375 (2%)
Strand=Plus/Plus
Query 28437 aaaaaaaaCAGCAAGTCCACGCTGGCTGCCGGGATCATGATGACGGCGCTGTTACTGAAC 28496
|| || ||| ||||||| || | || ||||| |||||| | || || ||| | || |||
Sbjct 268 AAGAAGAACGGCAAGTCAACCATCGCCGCCGGCATCATGCTCACCGCACTGATCCTCAAC 327
Query 28497 TGGCGGCAGGCGGCGGGCTACACCATTCTGGCCCCGACTGTGGAGGTGGCGGCTAACGCC 28556
|||||| | ||| | | || ||| |||| ||||| |||| | |||| |||| ||
Sbjct 328 TGGCGGGCGTCGGGTGAGTTCATCATCTTGGCGCCGACCAAGGAGATCGCGGATAACTCC 387
Query 28557 TTTAATCCTGCGCGGGATATGGTCAGACGTGACGATGATCTGGATGACCTCTGCCAGGTG 28616
| || ||||| ||||| | |||||| || || | | | | | |||||
Sbjct 388 TACCTCCCGATCCGGGACATGGTGGGTGCTGACGAAGAGCTCAAGGCCTTGCTCAAGGTG 447
Query 28617 CAGACACATATCCGGACCATCACCCACAGGGTGACGGACACTACCCTTAAGGTGGTGGCA 28676
||| || | || ||| | || ||| | ||| || | ||||| |||||||| ||
Sbjct 448 CAGGATCACCTGCGCACCGTGACGCACCGTCAGACTAACGCCACCCTCAAGGTGGTTGCG 507
Query 28677 GCCGATCCGAATACGGTGTCCGGTATCAAGTCCGTGGGGACACTGATTGATGAACTGTGG 28736
|| || | |||||||| || | || || | || | |||| || ||||||
Sbjct 508 GCGGACAGCGAGACGGTGTCGGGCAAGAAAGCCATCGGCGTGTTCGTTGACGAGCTGTGG 567
Query 28737 CTGTTTGGCAAGCAGTACAAAGCGGAAGACATGTTACGTGAAGCCATCGGCGGGCTTGCC 28796
|||| ||||||| | ||| || || | |||| | || || |||| || || || |||
Sbjct 568 GTGTTCGGCAAGCGGGCCAACGCCGAGGCCATGCTGCGCGAGGCCACTGGTGGCCTGGCC 627
Query 28797 TCCCGTCCGGAAGGATTTGTGGTGTACACAACCACCCAGTCGAATGAGCCGCCAGCCGGG 28856
|| || || || ||||| | | | | ||||||||||| ||| |||||| |||||
Sbjct 628 TCTCGGCCAGAGGGATTCATCATCTGGGCCACCACCCAGTCCGATGCGCCGCCGGCCGGC 687
Query 28857 GTGTTCAGACAGAAACTGCAGTACGCCCGGGATGTCCGTGACGGCAAAATTCATGATCCG 28916
|||||| | ||||| ||| ||||||||| | || || |||||| | || ||| |
Sbjct 688 GTGTTCCGGCAGAAGCTGATGTACGCCCGCAAGGTGCGCGACGGCGAGATCGTCGATAAG 747
Query 28917 CACTTTCTGCCGGTGATATTTGAACACCCTCCTGAAATGGTGGAAAGCGGGGCTCACCTG 28976
|| |||||||| | | |||| || | ||| | || ||| | |||| |
Sbjct 748 TCGTTCTTGCCGGTGCTGTATGAATTTCCCAAGGCGATGCTAGACGCCGGCGAACACCGG 807
Query 28977 --CTGATGGAAAACCTCGCCATGGTCAATCCGAATCTCGGTTATTCGGTGGATGAGGCTT 29034
|| | || | | ||| ||| |||||| | || ||||| || || | |
Sbjct 808 GACTTCTCTAACGCGTA--CATCACCAACCCGAATTTGGGGCTGTCGGTTGACGAACCCT 865
Query 29035 TTCTGTACCGGGAGTACCGTAAAGCCCGGGAGGCTGGTGAGGAAGCATTTCGTGGCTTCA 29094
| | | || | |||| | || | | || ||||| || | || || |||||
Sbjct 866 TCATCGAGCGTGGGTACGCCCAGGCGCAGCTGGACGGTGAAGAGTCGTTCCGCGGCTTTC 925
Query 29095 TGTCAAAACATGCCAATGTGGAAATTGGTCTTGCCCTGCGTTCTGACCGCTGGACGGGTG 29154
|| | || || ||| || || || || || || | | || || |||||| | || |
Sbjct 926 TGGCCAAGCACCTCAACGTCGAGATCGGCCTGGCGTTACTGTCGGATCGCTGGGCAGGCG 985
Query 29155 CGGATTTCTGGGAGCAGCAGGGC----AG--GCGCGTCAGCCTGGACGATATCCTGCA-G 29207
|||||||||||||| |||| | || | || || ||||| || |||| |
Sbjct 986 CGGATTTCTGGGAGGCGCAGACCTCCGAGCTGTGCCACACGCTGGAGGA---CCTGATCG 1042
Query 29208 CGCGCTGATGTGGTGACGG---TGGGGATTGACGGCGGGGGCCTGGATGATCTGCTGGGA 29264
|||||| | ||||| | | || | || |||||||| |||||||| |||| ||
Sbjct 1043 AGCGCTGC-GAGGTGATTGATATCGGCGTCGATGGCGGGGGGCTGGATGACTTGCTTGGC 1101
Query 29265 ATGTACGTGATTGGCCGTGA-CAGGGAAACCCGCGAATGGCTGGGCTGGGGCCATGCCTG 29323
| | | || || || ||||| | | ||| |||||| |||| |||||||||
Sbjct 1102 TTTGCAGCACTCGGTCGAGAGCAGGGCACACGGCGT-TGGCTGACCTGGACCCATGCCTG 1160
Query 29324 GGCGCATGAAACCGCGGTGGTCAGACGGAAGAGTGAGGCATCCCGGTTTCAGGATTTTGT 29383
||| || | | | ||| | || || || || | || | | || || |
Sbjct 1161 GGCCCACCCATCAGTACTGGAGCGGCGTAAAGCAGAAGCGCCGCGCATCCGCGACTTCGC 1220
Query 29384 GGCCTGTGGAGACATGACGATTGTCCGTCGGGTCGGGGATGACACGGCGGAAGTGGCGGA 29443
| ||| || |||| | || || |||| || |||| | || ||||| |
Sbjct 1221 GAAGGATGGGCACCTGACCCTGGTTGAACGCATCGGCGACGACATTGAGGCGGTGGCACA 1280
Query 29444 GTATGTGCGTCGTATTCATGAGGCTGAGTTACTGGAGCATATCGGTATTGACCCGTCAGG 29503
||| | || | |||| | | ||||| | |||| | |||||| | ||
Sbjct 1281 ACTGGTGGCGCAGGTTGAGCAGGCCGGCCTGCTGGACAAGGTCGGGCTGGACCCGGCCGG 1340
Query 29504 TGTGGGGCAGATTCTGGATTCACTGGCGGAAGCC---GGGATCCCCGACGGAATTGTTGT 29560
|| ||| ||| || || | |||| ||||| || || || || | | |
Sbjct 1341 CGTCGGGGCGATCCTCGACGCGCTGG---AAGCCATGGGTATTCCGCGCGAGAAAATCGA 1397
Query 29561 GGGGATAAGCCAGGGCTGGAAGCTGGGCGGGGCCATAAAAACCACCGAGCGCAAACTGGC 29620
|| || || |||||| |||||||| ||||| ||||| ||||||||||||||||
Sbjct 1398 CGGCATCTCACAAGGCTGGCGCCTGGGCGGAGCCATCAAAACTGCCGAGCGCAAACTGGC 1457
Query 29621 TGAGGGAGTACTGGTGCATGGTGGTCAGCCACTGATGGCCTGGTGCGTTGGCAATGCCCG 29680
||||| ||| | || || || ||||| |||||||||||||| || || |||
Sbjct 1458 CGAGGGCACGCTGCTACACGGGGGCCAGCCGATGATGGCCTGGTGCTGCGGTAACGCCAA 1517
Query 29681 GGTGGAGCCTAAAGGTAACGCCATTCTTATTACCAAACAGGCCAGCGGACGGGGGAAAAT 29740
|| ||||| || ||| | || || ||||| |||||||||||||| || || ||
Sbjct 1518 AGTCGAGCCCCGTGGCAACTCGATCCTCATTACTAAACAGGCCAGCGGCTCGGCCAAGAT 1577
Query 29741 TGACCCGCTGATGGCGCTCTTCAATGCGGTATCCCTGATGTCCCTGAATCCGGAG 29795
||||||||||||||||| ||||| || || | |||||| |||| ||||| |||
Sbjct 1578 CGACCCGCTGATGGCGCTATTCAACGCTGTGACGCTGATGGCCCTCAATCCAGAG 1632
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 185186834594152
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