Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31]
30,713 sequences; 2,429,212,129 total letters
Query= NC_005135.1
Length=173591
Score E
Sequences producing significant alignments: (Bits) Value
seq2102 134 2e-26
seq17670 100 3e-16
seq1238 89.7 6e-13
seq14167 86.0 7e-12
seq9452 86.0 7e-12
>seq2102
Length=3392
Score = 134 bits (148), Expect = 2e-26
Identities = 193/268 (72%), Gaps = 8/268 (3%)
Strand=Plus/Minus
Query 6970 CATAGCGAGAACCGAATCACCCGGCTTCAGGAGTGCTTGGTAAACTGCCTGGTTTGCTTG 7029
|||| | | ||| | ||| ||||| ||||| | || ||||||| || |||||| ||
Sbjct 2280 CATACCTAAAACGGTATCGCCCGGATTCAGCAAAGCCAGGTAAACAGCAGAGTTTGCCTG 2221
Query 7030 TGAACCGGAATGAGGTTGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTC 7089
|||||| | ||| || ||||||||||| | | || ||| |||||||||||||| ||
Sbjct 2220 TGAACCTGCATGGGGCTGAACGTTTGCATAGTCAGCACCAAAAAGTTCTTTAGCACGATC 2161
Query 7090 AATTGCCAGGTTCTCGATTTCATCGGCTTTTACGCAGCCGCCATAATACCGTTTGCCCGG 7149
|||||||| | || || |||| | | | || || || || || |||||||| ||
Sbjct 2160 AATTGCCAATTGTTCAATAACATCAACATGCTCACAACCACCGTAGTAGCGTTTGCCTGG 2101
Query 7150 ATATCCCTCAGCATACTTGTTGGTAAAAATAGAACCCTGTGCTTTCATAACATCGTCTG- 7208
||| || || ||||| ||||| || | | ||||| || |||| |||||| || |||
Sbjct 2100 ATAGCCTTCTGCATATTTGTTAGTGAGTTTTGAACCTTGCGCTTCCATAAC--CG-CTGG 2044
Query 7209 ---ACACATAGTTTTCGGACGCAATCAA 7233
||| ||||||||| || ||||| ||
Sbjct 2043 AGAACA-ATAGTTTTCAGAAGCAATTAA 2017
>seq17670
Length=18040
Score = 100 bits (110), Expect = 3e-16
Identities = 180/263 (68%), Gaps = 0/263 (0%)
Strand=Plus/Plus
Query 6938 CCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGCGAGAACCGAATCACCCGGCTTC 6997
||||| || || || || || | ||| | ||| | |||| | ||||| | | |
Sbjct 13275 CCGTGGGTCAGGTGACCACCATGGGCCAGGCTCATGCCCAGAATGGTGTCACCGGCCGAC 13334
Query 6998 AGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCG 7057
|| || || |||| || || ||| || || || |||| || || || ||||| |||
Sbjct 13335 AGCAGGGCCAGGTAGACAGCGGCGTTGGCCTGGGAGCCGGCGTGCGGCTGGACGTTGGCG 13394
Query 7058 AAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGCT 7117
| | | || ||||||| || || || || || ||||| | ||||| | ||| |
Sbjct 13395 TAGTCGGCACCGAACAGTTGCTTGGCGCGGTCGATGGCCAGCTGCTCGACGACGTCGACG 13454
Query 7118 TTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTAAAA 7177
| | ||||||| ||||| || || ||||| ||||| || || || ||||||||||| |
Sbjct 13455 TATTCGCAGCCACCATAGTAGCGCTTGCCTGGATAGCCTTCGGCGTACTTGTTGGTCAGT 13514
Query 7178 ATAGAACCCTGTGCTTTCATAAC 7200
| |||||||| |||| ||| ||
Sbjct 13515 ACCGAACCCTGGGCTTCCATGAC 13537
>seq1238
Length=1499
Score = 89.7 bits (98), Expect = 6e-13
Identities = 162/237 (68%), Gaps = 0/237 (0%)
Strand=Plus/Minus
Query 6937 CCCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGCGAGAACCGAATCACCCGGCTT 6996
|||||| | || || ||||| | | || | || |||| | | ||| ||||||
Sbjct 981 CCCGTGGGACAGGTGCCCGCCCGACTTCAGGTCCAGGCCGAGGATCTTATCCTCCGGCTC 922
Query 6997 CAGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGC 7056
||| || || || | || |||||||| || || ||||| || ||||| ||||| ||
Sbjct 921 CAGCAGCGCCAGGAACACCGCCTGGTTGGCCTGGTTGCCGGAGTGGGGTTGCACGTTGGC 862
Query 7057 GAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGC 7116
| |||||| ||||| || ||||| || ||||||| ||||| |||| |
Sbjct 861 ATAGCTGCAACCGAACAGCAGCCGGGCCCGCTCGATGGCCAGGTCCTCGACCACATCCAC 802
Query 7117 TTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGT 7173
|| | |||| | | ||||| ||| ||||| || |||||||| |||||||||||
Sbjct 801 ATTGCCACAGCTGGCGTAATAGCGTCGCCCCGGGTACCCCTCAGCGTACTTGTTGGT 745
>seq14167
Length=1194
Score = 86.0 bits (94), Expect = 7e-12
Identities = 147/212 (69%), Gaps = 1/212 (0%)
Strand=Plus/Plus
Query 6990 CCGGCTT-CAGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGA 7048
||| ||| ||| || || |||| || || ||| ||||| ||||||| || || ||
Sbjct 128 CCGCCTTGCAGCAGGGCCAGGTACACGGCGCTGTTGGCTTGGGAACCGGCGTGTGGCTGG 187
Query 7049 ACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATT 7108
||||| ||| ||| | | ||||| ||||| ||||| || || |||| | ||| |
Sbjct 188 ACGTTGGCGTAATCGGCGCCGAACAGCTCTTTGGCACGGTCGATGGCCAACTGCTCAACC 247
Query 7109 TCATCGGCTTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTG 7168
| ||| | | |||| || || || || || ||||| || || || || || ||||||
Sbjct 248 ACGTCGACGTACTCGCAACCACCGTAGTAGCGCTTGCCTGGGTAGCCTTCGGCGTACTTG 307
Query 7169 TTGGTAAAAATAGAACCCTGTGCTTTCATAAC 7200
||||| | || ||||| || || | ||| ||
Sbjct 308 TTGGTCAGAACCGAACCTTGAGCCTCCATCAC 339
>seq9452
Length=5522
Score = 86.0 bits (94), Expect = 7e-12
Identities = 164/239 (69%), Gaps = 6/239 (3%)
Strand=Plus/Plus
Query 6491 AAACAAACTGCTTTCGCTGCGATAACATGAAGAAGCGGGCCGCCTTGAATACCCGGGAAG 6550
|| || || || || | ||||| || || | |||||||||||||| |||||||||
Sbjct 893 AAGCACACCGCCTTGCCGGCGATCACGTGCATCAGCGGGCCGCCTTGGGCGCCCGGGAAG 952
Query 6551 ATAGCAGAATTTACTTTCTTGGCGATATCAGC-ATCG--TTAGTAAGAATGAGGCCACCA 6607
| |||| || | |||||| |||| || | ||| || | || || ||||| |||
Sbjct 953 ACGGCAGCGTTGAGTTTCTTCTCGATCTCTTCGTTCGACTTGGCCAGGATCAGGCCGCCA 1012
Query 6608 CGAGGGCCGCGCAAAGTTTTATGAGTTGTAGTAGTAACAACGTCGGCACCCCATTTGAGT 6667
|| |||||||||| || || || || || || || || ||||| | | | || |
Sbjct 1013 CGCGGGCCGCGCAGGGTCTTGTGGGTGGTGGTGGTCACCACGTCCG---CGAACGGGATT 1069
Query 6668 GGATTAGCGTGAAGACGAGCAGCAACAAAGCCAGCAAAATGGGCCATATCGACCATCAA 6726
|| || | || ||| | ||||| || ||||| || | |||||||| || || | |||
Sbjct 1070 GGGTTCGGGTAAAGGCCCGCAGCGACCAAGCCGGCCACGTGGGCCATGTCCACGAACAA 1128
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 555149989125480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |