Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lipotes_20vexillifer_20[refseq_20GCF_5F000442215.1_202013-07-31] 30,713 sequences; 2,429,212,129 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq2102 134 2e-26 seq17670 100 3e-16 seq1238 89.7 6e-13 seq14167 86.0 7e-12 seq9452 86.0 7e-12 >seq2102 Length=3392 Score = 134 bits (148), Expect = 2e-26 Identities = 193/268 (72%), Gaps = 8/268 (3%) Strand=Plus/Minus Query 6970 CATAGCGAGAACCGAATCACCCGGCTTCAGGAGTGCTTGGTAAACTGCCTGGTTTGCTTG 7029 |||| | | ||| | ||| ||||| ||||| | || ||||||| || |||||| || Sbjct 2280 CATACCTAAAACGGTATCGCCCGGATTCAGCAAAGCCAGGTAAACAGCAGAGTTTGCCTG 2221 Query 7030 TGAACCGGAATGAGGTTGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTC 7089 |||||| | ||| || ||||||||||| | | || ||| |||||||||||||| || Sbjct 2220 TGAACCTGCATGGGGCTGAACGTTTGCATAGTCAGCACCAAAAAGTTCTTTAGCACGATC 2161 Query 7090 AATTGCCAGGTTCTCGATTTCATCGGCTTTTACGCAGCCGCCATAATACCGTTTGCCCGG 7149 |||||||| | || || |||| | | | || || || || || |||||||| || Sbjct 2160 AATTGCCAATTGTTCAATAACATCAACATGCTCACAACCACCGTAGTAGCGTTTGCCTGG 2101 Query 7150 ATATCCCTCAGCATACTTGTTGGTAAAAATAGAACCCTGTGCTTTCATAACATCGTCTG- 7208 ||| || || ||||| ||||| || | | ||||| || |||| |||||| || ||| Sbjct 2100 ATAGCCTTCTGCATATTTGTTAGTGAGTTTTGAACCTTGCGCTTCCATAAC--CG-CTGG 2044 Query 7209 ---ACACATAGTTTTCGGACGCAATCAA 7233 ||| ||||||||| || ||||| || Sbjct 2043 AGAACA-ATAGTTTTCAGAAGCAATTAA 2017 >seq17670 Length=18040 Score = 100 bits (110), Expect = 3e-16 Identities = 180/263 (68%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 6938 CCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGCGAGAACCGAATCACCCGGCTTC 6997 ||||| || || || || || | ||| | ||| | |||| | ||||| | | | Sbjct 13275 CCGTGGGTCAGGTGACCACCATGGGCCAGGCTCATGCCCAGAATGGTGTCACCGGCCGAC 13334 Query 6998 AGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCG 7057 || || || |||| || || ||| || || || |||| || || || ||||| ||| Sbjct 13335 AGCAGGGCCAGGTAGACAGCGGCGTTGGCCTGGGAGCCGGCGTGCGGCTGGACGTTGGCG 13394 Query 7058 AAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGCT 7117 | | | || ||||||| || || || || || ||||| | ||||| | ||| | Sbjct 13395 TAGTCGGCACCGAACAGTTGCTTGGCGCGGTCGATGGCCAGCTGCTCGACGACGTCGACG 13454 Query 7118 TTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTAAAA 7177 | | ||||||| ||||| || || ||||| ||||| || || || ||||||||||| | Sbjct 13455 TATTCGCAGCCACCATAGTAGCGCTTGCCTGGATAGCCTTCGGCGTACTTGTTGGTCAGT 13514 Query 7178 ATAGAACCCTGTGCTTTCATAAC 7200 | |||||||| |||| ||| || Sbjct 13515 ACCGAACCCTGGGCTTCCATGAC 13537 >seq1238 Length=1499 Score = 89.7 bits (98), Expect = 6e-13 Identities = 162/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 6937 CCCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGCGAGAACCGAATCACCCGGCTT 6996 |||||| | || || ||||| | | || | || |||| | | ||| |||||| Sbjct 981 CCCGTGGGACAGGTGCCCGCCCGACTTCAGGTCCAGGCCGAGGATCTTATCCTCCGGCTC 922 Query 6997 CAGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGC 7056 ||| || || || | || |||||||| || || ||||| || ||||| ||||| || Sbjct 921 CAGCAGCGCCAGGAACACCGCCTGGTTGGCCTGGTTGCCGGAGTGGGGTTGCACGTTGGC 862 Query 7057 GAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGC 7116 | |||||| ||||| || ||||| || ||||||| ||||| |||| | Sbjct 861 ATAGCTGCAACCGAACAGCAGCCGGGCCCGCTCGATGGCCAGGTCCTCGACCACATCCAC 802 Query 7117 TTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGT 7173 || | |||| | | ||||| ||| ||||| || |||||||| ||||||||||| Sbjct 801 ATTGCCACAGCTGGCGTAATAGCGTCGCCCCGGGTACCCCTCAGCGTACTTGTTGGT 745 >seq14167 Length=1194 Score = 86.0 bits (94), Expect = 7e-12 Identities = 147/212 (69%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 6990 CCGGCTT-CAGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGA 7048 ||| ||| ||| || || |||| || || ||| ||||| ||||||| || || || Sbjct 128 CCGCCTTGCAGCAGGGCCAGGTACACGGCGCTGTTGGCTTGGGAACCGGCGTGTGGCTGG 187 Query 7049 ACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATT 7108 ||||| ||| ||| | | ||||| ||||| ||||| || || |||| | ||| | Sbjct 188 ACGTTGGCGTAATCGGCGCCGAACAGCTCTTTGGCACGGTCGATGGCCAACTGCTCAACC 247 Query 7109 TCATCGGCTTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTG 7168 | ||| | | |||| || || || || || ||||| || || || || || |||||| Sbjct 248 ACGTCGACGTACTCGCAACCACCGTAGTAGCGCTTGCCTGGGTAGCCTTCGGCGTACTTG 307 Query 7169 TTGGTAAAAATAGAACCCTGTGCTTTCATAAC 7200 ||||| | || ||||| || || | ||| || Sbjct 308 TTGGTCAGAACCGAACCTTGAGCCTCCATCAC 339 >seq9452 Length=5522 Score = 86.0 bits (94), Expect = 7e-12 Identities = 164/239 (69%), Gaps = 6/239 (3%) Strand=Plus/Plus Query 6491 AAACAAACTGCTTTCGCTGCGATAACATGAAGAAGCGGGCCGCCTTGAATACCCGGGAAG 6550 || || || || || | ||||| || || | |||||||||||||| ||||||||| Sbjct 893 AAGCACACCGCCTTGCCGGCGATCACGTGCATCAGCGGGCCGCCTTGGGCGCCCGGGAAG 952 Query 6551 ATAGCAGAATTTACTTTCTTGGCGATATCAGC-ATCG--TTAGTAAGAATGAGGCCACCA 6607 | |||| || | |||||| |||| || | ||| || | || || ||||| ||| Sbjct 953 ACGGCAGCGTTGAGTTTCTTCTCGATCTCTTCGTTCGACTTGGCCAGGATCAGGCCGCCA 1012 Query 6608 CGAGGGCCGCGCAAAGTTTTATGAGTTGTAGTAGTAACAACGTCGGCACCCCATTTGAGT 6667 || |||||||||| || || || || || || || || ||||| | | | || | Sbjct 1013 CGCGGGCCGCGCAGGGTCTTGTGGGTGGTGGTGGTCACCACGTCCG---CGAACGGGATT 1069 Query 6668 GGATTAGCGTGAAGACGAGCAGCAACAAAGCCAGCAAAATGGGCCATATCGACCATCAA 6726 || || | || ||| | ||||| || ||||| || | |||||||| || || | ||| Sbjct 1070 GGGTTCGGGTAAAGGCCCGCAGCGACCAAGCCGGCCACGTGGGCCATGTCCACGAACAA 1128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555149989125480